Alexandra Naba

Also affiliated with University of Illinois Chicago, University of Chicago

ChemistryMedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

5.9Author DataRank

Indexed papers

5in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 5 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

MatrisomeDB 2.0: 2023 updates to the ECM-protein knowledge database

Nucleic Acids Research(2022)10.1093/nar/gkac1009

Top 7%

3.3DataRank

Top 7%210 citations

Clarissa Gomez, Nandini Kapoor, James M. Considine, Christopher Grams, Yu Gao +2 more

Papers

Driven by 32 papers — median percentile 73. Top paper: “MatrisomeDB 2.0: 2023 updates to the ECM-protein knowledge database”.

MatrisomeDB 2.0: 2023 updates to the ECM-protein knowledge database

Nucleic Acids Research(2022)10.1093/nar/gkac1009

Top 7%

3.3DataRank

Top 7%210 citations

Clarissa Gomez, Nandini Kapoor, James M. Considine, Christopher Grams, Yu Gao +2 more

Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP)

Nature Cell Biology(2023)10.1038/s41556-023-01194-w

N/A

2.3DataRank · unranked

175 citations

Liming Pei, Jeffrey M. Spraggins, Michael Angelo, James P. Carson, Nils Gehlenborg +95 more

Matrisome AnalyzeR – a suite of tools to annotate and quantify ECM molecules in big datasets across organisms

Journal of Cell Science(2023)10.1242/jcs.261255

Top 18%

1.1DataRank

Top 18%60 citations

James M. Considine, Valerio Izzi, Alexandra Naba, Petar Petrov

The Gene Ontology knowledgebase in 2026

Nucleic Acids Research(2025)10.1093/nar/gkaf1292

Top 27%

0.743DataRank

Top 27%95 citations

James P. Balhoff, Seth Carbon, J. Michael Cherry, Dustin Ebert, Marc Feuermann +95 more

Matrisome AnalyzeR: A suite of tools to annotate and quantify ECM molecules in big datasets across organisms

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.18.537378

Top 46%

0.393DataRank

Top 46%7 citations

James M. Considine, Valerio Izzi, Alexandra Naba, Petar Petrov

MatrixDB 2024: an increased coverage of extracellular matrix interactions, a new Network Explorer and a new web interface

Nucleic Acids Research(2024)10.1093/nar/gkae1088

Top 55%

0.303DataRank

Top 55%6 citations

Max Kotlyar, Sylvain D. Vallet, Catherine Hayes, Alexandra Naba, Igor Jurišica +3 more

A Proliferative to Invasive Switch is Mediated by srGAP1 Downregulation Through the Activation of TGFβ2 Signaling

SSRN Electronic Journal(2021)10.2139/ssrn.3891792

N/A

0DataRank · unranked

0 citations

María José Gacha Garay, Kathryn Larkin, Rebecca C. Adikes, Julie S. Di Martino, C. H. Chien +13 more

Multi-modal profiling of the extracellular matrix of human fallopian tubes and serous tubal Intraepithelial carcinomas

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.21.461246

N/A

0DataRank · unranked

0 citations

Clarissa Gomez, Mike R. Visetsouk, Isra Taha, Aisha Khan, Stephanie M. McGregor +5 more

New Views of Old Proteins: Clarifying the Enigmatic Proteome

Molecular & Cellular Proteomics(2022)10.1016/j.mcpro.2022.100254

N/A

0DataRank · unranked

36 citations

Thomas P. Conrads, Richard R. Drake, Amy E. Herr, Ravi Iyengar, Ryan T. Kelly +15 more

A proliferative to invasive switch is mediated by srGAP1 downregulation through the activation of TGF-β2 signaling

Cell Reports(2022)10.1016/j.celrep.2022.111358

N/A

0DataRank · unranked

24 citations

Majo J. Gacha-Garay, Kathryn A. Larkin, Rebecca C. Adikes, Julie S. Di Martino, C. H. Chien +14 more

Reduced SPAG17 Expression in Systemic Sclerosis Triggers Myofibroblast Transition and Drives Fibrosis

Journal of Investigative Dermatology(2022)10.1016/j.jid.2022.08.052

N/A

0DataRank · unranked

14 citations

Elisha Roberson, Bo Shi, Shervin Assassi, Brian Skaug, Fred Lee +18 more

Ten Years of Extracellular Matrix Proteomics: Accomplishments, Challenges, and Future Perspectives

Molecular & Cellular Proteomics(2023)10.1016/j.mcpro.2023.100528

N/A

0DataRank · unranked

110 citations

Alexandra Naba

Hepatocellular carcinomas, exhibiting intratumor fibrosis, express cancer-specific extracellular matrix remodeling and WNT/TGFB signatures, associated with poor outcome

Hepatology(2023)10.1097/hep.0000000000000362

N/A

0DataRank · unranked

46 citations

Wei Chen, Xiaodong Ge, Roselyne Viel, Hui Han, Dipti Athavale +8 more

Mechanisms of assembly and remodelling of the extracellular matrix

Nature Reviews Molecular Cell Biology(2024)10.1038/s41580-024-00767-3

N/A

0DataRank · unranked

267 citations

Alexandra Naba

Extracellular matrix dynamics: A key regulator of cell migration across length-scales and systems

Current Opinion in Cell Biology(2024)10.1016/j.ceb.2023.102309

N/A

0DataRank · unranked

64 citations

Alexandra Naba, Dharma Pally

The novel ECM protein SNED1 mediates cell adhesion via the RGD-binding integrins α5β1 and αvβ3

Journal of Cell Science(2024)10.1242/jcs.263479

N/A

0DataRank · unranked

8 citations

N. N. Kapoor, Alexandra Naba, Dharma Pally

Proteomic insights into the extracellular matrix: a focus on proteoforms and their implications in health and disease

Expert Review of Proteomics(2024)10.1080/14789450.2024.2427136

N/A

0DataRank · unranked

6 citations

Alexandra Naba, Amanpreet Kaur Bains

MatriCom: a scRNA-Seq data mining tool to infer ECM-ECM and cell-ECM communication systems

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.10.627834

N/A

0DataRank · unranked

2 citations

Asia M. Paguntalan, Petar Petrov, Alexandra Naba, Valerio Izzi, Rijuta Lamba

The novel ECM protein SNED1 mediates cell adhesion via the RGD-binding integrins α5β1 and αvβ3

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.08.07.606706

N/A

0DataRank · unranked

0 citations

N. N. Kapoor, Alexandra Naba, Dharma Pally

Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP)

UNC Libraries(2024)10.17615/57gg-2n56

N/A

0DataRank · unranked

0 citations

Louise C. Laurent, Neil L. Kelleher, Huiping Liu, Weijun Qian, Mowei Zhou +21 more

MatriCom, a single-cell RNA-sequencing data mining tool to infer cell–extracellular matrix interactions

Journal of Cell Science(2025)10.1242/jcs.263927

N/A

0DataRank · unranked

7 citations

Asia M. Paguntalan, Petar Petrov, Alexandra Naba, Valerio Izzi, Rijuta Lamba

A guide to building the matrisome interactome: from computational predictions to experimental validation

FEBS Journal(2025)10.1111/febs.70344

N/A

0DataRank · unranked

4 citations

Amanpreet Kaur Bains, Ikram Isa, Sylvie Ricard‐Blum, Alexandra Naba, Leanna Leverton

Fibronectin composition and transglutaminase 2 cross-linking cooperatively regulate ovarian cancer cell adhesion in ECM-mimetic constructs

Acta Biomaterialia(2025)10.1016/j.actbio.2025.09.025

N/A

0DataRank · unranked

1 citations

Ali Abbaspour, James M. Considine, Stephanie M. McGregor, Erin G. Brooks, Alexandra Naba +3 more

In-depth proteomic profiling of the extracellular matrix of pancreatic ductal adenocarcinomas identifies signatures correlating with lymphocyte infiltration

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.22.669728

N/A

0DataRank · unranked

2 citations

Dharma Pally, Sarah A. O’Brien, Jessica Potts, Di Feng, Jeanine Pignatelli +4 more

Comparative proteomic analysis of the ECM composition of the human omentum and mesentery, the main sites of ovarian cancer metastasis

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.28.667199

N/A

0DataRank · unranked

1 citations

Clarissa Gomez, Dharma Pally, Ning Yang, Isra Taha, J. D. Sorenson +4 more

Proteomic Profiling of the ECM of Xenograft Breast Cancer Metastases in Different Organs Reveals Distinct Metastatic Niches

Cancer Research(2020)10.1158/0008-5472.can-19-2961

N/A

0DataRank · unranked

119 citations

Samuel A. Myers, Alexandra Naba, Genevieve Abbruzzese, John M. Lamar, Steven A. Carr +2 more

Comparative proteomic analysis of the ECM composition of the human omentum and mesentery, the main sites of ovarian cancer metastasis

iScience(2025)10.1016/j.isci.2025.114461

N/A

0DataRank · unranked

0 citations

Clarissa Gomez, Dharma Pally, Ning Yang, Isra Taha, J. D. Sorenson +4 more

The liver matrisome – looking beyond collagens

JHEP Reports(2020)10.1016/j.jhepr.2020.100115

N/A

0DataRank · unranked

106 citations

Alexandra Naba, Gavin E. Arteel

Knockout of the gene encoding the extracellular matrix protein SNED1 results in early neonatal lethality and craniofacial malformations

Developmental Dynamics(2020)10.1002/dvdy.258

N/A

0DataRank · unranked

26 citations

Kyleen Jan, Emanuel De La Fuente, Christina L. Nicholas, Richard O. Hynes, Alexandra Naba +1 more

A tumor-derived type III collagen-rich ECM niche regulates tumor cell dormancy

Nature Cancer(2021)10.1038/s43018-021-00291-9

N/A

0DataRank · unranked

303 citations

Ana Rita Nobre, Chandrani Mondal, Isra Taha, Eduardo Farias, Elana J. Fertig +4 more

Multi-modal Profiling of the Extracellular Matrix of Human Fallopian Tubes and Serous Tubal Intraepithelial Carcinomas

Journal of Histochemistry & Cytochemistry(2021)10.1369/00221554211061359

N/A

0DataRank · unranked

12 citations

Clarissa Gomez, Mike R. Visetsouk, Isra Taha, Aisha Khan, Stephanie M. McGregor +5 more

A tumor-derived type III collagen-rich ECM niche regulates tumor cell dormancy

Research Square(2021)10.21203/rs.3.rs-580847/v1

N/A

0DataRank · unranked

42 citations

Ana Rita Nobre, Chandrani Mondal, Isrha Taha, Eduardo Farias, Elana J. Fertig +4 more

Alexandra Naba

Indexed papers

Top data-sharing exemplar

Papers