Serdar Bozdag

Also affiliated with Sunny BioDiscovery (United States)

Biochemistry, Genetics and Molecular BiologyMedicineComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 36 papers. Top paper: “Current and future directions in network biology”.

Current and future directions in network biology

Bioinformatics Advances(2024)10.1093/bioadv/vbae099

N/A

1.6DataRank · unranked

100 citations

Michelle M. Li, Aydin Wells, Kimberly Glass, Deisy Morselli Gysi, Krishnan, Arjun +32 more

Current and future directions in network biology

arXiv (Cornell University)(2023)10.48550/arxiv.2309.08478

N/A

0.208DataRank · unranked

3 citations

Michelle M. Li, Aydin Wells, Kimberly Glass, Deisy Morselli Gysi, Krishnan, Arjun +32 more

NRPreTo: A Machine Learning-Based Nuclear Receptor and Subfamily Prediction Tool

ACS Omega(2023)10.1021/acsomega.3c00286

N/A

0.124DataRank · unranked

1 citations

S. K. Singh Pandey, Shreya Amalapurapu, Serdar Bozdag, Sita Sirisha Madugula

The Impact of Pre-Operative Healthcare Utilization on Complications, Readmissions, and Post-Operative Healthcare Utilization Following Total Joint Arthroplasty

The Journal of Arthroplasty(2021)10.1016/j.arth.2021.11.018

N/A

0DataRank · unranked

7 citations

Andrew Kleven, Ziynet Nesibe Kesimoglu, Austin H. Middleton, Meaghan Holub, Serdar Bozdag +2 more

Do In-Hospital Rothman Index Scores Predict Postdischarge Adverse Events and Discharge Location After Total Knee Arthroplasty?

The Journal of Arthroplasty(2021)10.1016/j.arth.2021.12.022

N/A

0DataRank · unranked

2 citations

Austin H. Middleton, Ziynet Nesibe Kesimoglu, Isaac Slagel, Ashley E Creager, Ryan Hanson +3 more

Computing MicroRNA-Gene Interaction Networks in Pan-cancer Using MiRDriver

Research Square(2021)10.21203/rs.3.rs-1101651/v1

N/A

0DataRank · unranked

0 citations

Matthew Moravec, Serdar Bozdag, Banabithi Bose

Computing microRNA-gene interaction networks in pan-cancer using miRDriver

Scientific Reports(2022)10.1038/s41598-022-07628-z

N/A

0DataRank · unranked

8 citations

Matthew Moravec, Serdar Bozdag, Banabithi Bose

SUPREME: A cancer subtype prediction methodology integrating multiomics data using Graph Convolutional Neural Network

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.03.502682

N/A

0DataRank · unranked

4 citations

Serdar Bozdag, Ziynet Nesibe Kesimoglu

Finding the best cell lines across pan-cancer to use in pre-clinical research as a proxy for patient tumor samples considering immune cells, multi-omics, and cancer pathways

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.18.520831

N/A

0DataRank · unranked

1 citations

Serdar Bozdag, Banabithi Bose

NRPreTo: A Machine Learning Based Nuclear Receptor and Subfamily Prediction Tool

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.12.516270

N/A

0DataRank · unranked

0 citations

S. K. Singh Pandey, Shreya Amalapurapu, Serdar Bozdag, Sita Sirisha Madugula

SUPREME: multiomics data integration using graph convolutional networks

NAR Genomics and Bioinformatics(2023)10.1093/nargab/lqad063

N/A

0DataRank · unranked

30 citations

Serdar Bozdag, Ziynet Nesibe Kesimoglu

PPAD: a deep learning architecture to predict progression of Alzheimer’s disease

Bioinformatics(2023)10.1093/bioinformatics/btad249

N/A

0DataRank · unranked

25 citations

Jared Martinez, Fahad Saeed, Serdar Bozdag, Alzheimer’s Disease Neuroimaging Initiative, Mohammad Al Olaimat

PVTAD: ALZHEIMER’S DISEASE DIAGNOSIS USING PYRAMID VISION TRANSFORMER APPLIED TO WHITE MATTER OF T1-WEIGHTED STRUCTURAL MRI DATA

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.17.567617

N/A

0DataRank · unranked

4 citations

Serdar Bozdag, Fahad Saeed, Alzheimer’s Disease Neuroimaging Initiative, Maryam Akhavan Aghdam

PPAD: A deep learning architecture to predict progression of Alzheimer’s disease

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.28.526045

N/A

0DataRank · unranked

5 citations

Jared Martinez, Fahad Saeed, Serdar Bozdag, Alzheimer's Disease Neuroimaging Initiative, Mohammad Al Olaimat

GRAF: Graph Attention-aware Fusion Networks

arXiv (Cornell University)(2023)10.48550/arxiv.2303.16781

N/A

0DataRank · unranked

3 citations

Serdar Bozdag, Ziynet Nesibe Kesimoglu

TA-RNN: an attention-based time-aware recurrent neural network architecture for electronic health records

Bioinformatics(2024)10.1093/bioinformatics/btae264

N/A

0DataRank · unranked

22 citations

Serdar Bozdag, for the Alzheimer’s Disease Neuroimaging Initiative, Mohammad Al Olaimat

Fusing multiplex heterogeneous networks using graph attention-aware fusion networks

Scientific Reports(2024)10.1038/s41598-024-78555-4

N/A

0DataRank · unranked

9 citations

Serdar Bozdag, Ziynet Nesibe Kesimoglu

Identifying cell lines across pan-cancer to be used in preclinical research as a proxy for patient tumor samples

Communications Biology(2024)10.1038/s42003-024-06812-3

N/A

0DataRank · unranked

7 citations

Serdar Bozdag, Banabithi Bose

ProtFun: a protein function prediction model using graph attention networks with a protein large language model

Bioinformatics Advances(2024)10.1093/bioadv/vbaf245

N/A

0DataRank · unranked

1 citations

Serdar Bozdag, Muhammed Talo

Pvtad: Alzheimer’s Disease Diagnosis Using Pyramid Vision Transformer Applied to White Matter of T1-Weighted Structural Mri Data

PubMed(2024)10.1109/isbi56570.2024.10635541

N/A

0DataRank · unranked

9 citations

Serdar Bozdag, Fahad Saeed, Maryam Akhavan Aghdam

IGCN: Integrative Graph Convolution Networks for patient level insights and biomarker discovery in multi-omics integration

arXiv (Cornell University)(2024)10.48550/arxiv.2401.17612

N/A

0DataRank · unranked

0 citations

Mohammad Al Olaimat, Yashu Vashishath, Serdar Bozdag, Alzheimer’s Disease Neuroimaging Initiative, Cagri Ozdemir

Early changes in microRNA expression in Arabidopsis plants infected with the fungal pathogen Fusarium graminearum

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.29.596347

N/A

0DataRank · unranked

0 citations

S. C. Pandey, Jesseca Hemminger, Serdar Bozdag, Mauricio S. Antunes, Sávio Siqueira Ferreira

Longitudinal Ensemble Integration for sequential classification with multimodal data

arXiv (Cornell University)(2024)10.48550/arxiv.2411.05983

N/A

0DataRank · unranked

0 citations

Rupak Krishnamurthy, Yan Chak Li, Mohammad Olaimat, Serdar Bozdag, Bino Varghese +3 more

Identifying Alzheimer’s disease-associated genes using PhenoGeneRanker

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.12.623269

N/A

0DataRank · unranked

0 citations

Fahad Saeed, Serdar Bozdag, Alzheimer’s Disease Neuroimaging Initiative, Most Tahmina Rahman

Machine-learning models for Alzheimer’s disease diagnosis using neuroimaging data: survey, reproducibility, and generalizability evaluation

Brain Informatics(2025)10.1186/s40708-025-00252-3

N/A

0DataRank · unranked

32 citations

Serdar Bozdag, Fahad Saeed, Alzheimer’s Disease Neuroimaging Initiative, Maryam Akhavan Aghdam

IGCN: integrative graph convolution networks for patient level insights and biomarker discovery in multi-omics integration

Bioinformatics(2025)10.1093/bioinformatics/btaf313

N/A

0DataRank · unranked

8 citations

Yashu Vashishath, Serdar Bozdag, Alzheimer’s Disease Neuroimaging Initiative, Cagri Ozdemir

Top-DTI: integrating topological deep learning and large language models for drug–target interaction prediction

Bioinformatics(2025)10.1093/bioinformatics/btaf183

N/A

0DataRank · unranked

7 citations

Serdar Bozdag, Muhammed Talo

Computational inference of co-regulatory modules from transcription factors, MicroRNAs, and their targets using CanMod2

Scientific Reports(2025)10.1038/s41598-025-97476-4

N/A

0DataRank · unranked

1 citations

Jubair Ibn Malik Rifat, Serdar Bozdag, Ziynet Nesibe Kesimoglu

Early changes in microRNA expression in Arabidopsis plants infected with the fungal pathogen Fusarium graminearum

PLoS ONE(2025)10.1371/journal.pone.0318532

N/A

0DataRank · unranked

1 citations

S. C. Pandey, Jesseca Hemminger, Serdar Bozdag, Mauricio S. Antunes, Sávio Siqueira Ferreira

ProtFun: A Protein Function Prediction Model Using Graph Attention Networks with a Protein Large Language Model

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.13.653854

N/A

0DataRank · unranked

1 citations

Serdar Bozdag, Muhammed Talo

HINN: Hierarchical Input Neural Network identifies multi-omics biomarker for cognitive decline

Research Square(2025)10.21203/rs.3.rs-7576397/v1

N/A

0DataRank · unranked

1 citations

Shirley Beaver, Fahad Saeed, Serdar Bozdag, Yashu Vashishath

Evaluating Fairness and Generalizability of Alzheimer’s Disease Diagnosis Models Trained on Racially Imbalanced Datasets

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.30.678854

N/A

0DataRank · unranked

1 citations

Bizhan Alipour Pijani, Serdar Bozdag, Neha Goud Baddam

CTDPathSim: Cell line-tumor deconvoluted pathway-based similarity in the context of precision medicine in cancer *

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.13.149666

N/A

0DataRank · unranked

0 citations

Serdar Bozdag, Banabithi Bose

A network model for patient-derived drug response in breast cancer integrating multi-omics datasets

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.09.658757

N/A

0DataRank · unranked

0 citations

Barbara E. Stranger, Serdar Bozdag, Banabithi Bose

Crinet: A computational tool to infer genome-wide competing endogenous RNA (ceRNA) interactions

PLoS ONE(2021)10.1371/journal.pone.0251399

N/A

0DataRank · unranked

12 citations

Serdar Bozdag, Ziynet Nesibe Kesimoglu

PhenoGeneRanker: Gene and Phenotype Prioritization Using Multiplex Heterogeneous Networks

IEEE/ACM Transactions on Computational Biology and Bioinformatics(2021)10.1109/tcbb.2021.3098278

N/A

0DataRank · unranked

9 citations

Anne E. Kwitek, Serdar Bozdag, Cagatay Dursun