Pemra Doruker

Biochemistry, Genetics and Molecular BiologyMaterials Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 9 papers. Top paper: “Modulation of Toroidal Proteins Dynamics in Favor of Functional Mechanisms upon Ligand Binding”.

Modulation of Toroidal Proteins Dynamics in Favor of Functional Mechanisms upon Ligand Binding

Biophysical Journal(2020)10.1016/j.bpj.2020.01.046

N/A

0DataRank · unranked

15 citations

Pemra Doruker, Guang Hu, İvet Bahar, Hongchun Li

Towards gaining sight of multiscale events: utilizing network models and normal modes in hybrid methods

Current Opinion in Structural Biology(2020)10.1016/j.sbi.2020.05.013

N/A

0DataRank · unranked

42 citations

Pemra Doruker, Ana Lígia Scott, David Pérahia, İvet Bahar, James Krieger

ProDy 2.0: increased scale and scope after 10 years of protein dynamics modelling with Python

Bioinformatics(2021)10.1093/bioinformatics/btab187

N/A

0DataRank · unranked

229 citations

James Krieger, Yan Zhang, Cihan Kaya, Burak Kaynak, Karolina Mikulska‐Ruminska +4 more

ClustENMD: efficient sampling of biomolecular conformational space at atomic resolution

Bioinformatics(2021)10.1093/bioinformatics/btab496

N/A

0DataRank · unranked

29 citations

She Zhang, İvet Bahar, Pemra Doruker, Burak Kaynak

Sampling of Protein Conformational Space Using Hybrid Simulations: A Critical Assessment of Recent Methods

Frontiers in Molecular Biosciences(2022)10.3389/fmolb.2022.832847

N/A

0DataRank · unranked

32 citations

James Krieger, Bálint Dudás, Zakaria Larbi Dahmani, Maurício G. S. Costa, Erika Balog +5 more

Activation and Speciation Mechanisms in Class A GPCRs

Journal of Molecular Biology(2022)10.1016/j.jmb.2022.167690

N/A

0DataRank · unranked

11 citations

Pemra Doruker, İvet Bahar, Bentley M. Wingert

Predicting allosteric pockets in protein biological assemblages

Bioinformatics(2023)10.1093/bioinformatics/btad275

N/A

0DataRank · unranked

28 citations

Burak Kaynak, Karin S. Dorman, Pemra Doruker, Robert L. Jernigan, Ambuj Kumar

Cooperative mechanics of PR65 scaffold underlies the allosteric regulation of the phosphatase PP2A

Structure(2023)10.1016/j.str.2023.02.012

N/A

0DataRank · unranked

17 citations

Zakaria Larbi Dahmani, Pemra Doruker, Anupam Banerjee, Shang-Hua Yang, Reuven Gordon +3 more

Influence of Point Mutations on PR65 Conformational Adaptability: Insights from Nanoaperture Optical Tweezer Experiments and Molecular Simulations

Research Square(2023)10.21203/rs.3.rs-3599809/v1

N/A

0DataRank · unranked

1 citations

Anupam Banerjee, Samuel Mathew, Mohsin M. Naqvi, Sema Zeynep Yilmaz, Maria Zachoropoulou +7 more