Andrew Carroll

Also affiliated with Western NSW Local Health District

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

18.4Author DataRank

Indexed papers

11in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 11 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A draft human pangenome reference

Nature(2023)10.1038/s41586-023-05896-x

Top 4%

5.1DataRank

Top 4%1169 citations

Mobin Asri, Jana Ebler, Daniel Doerr, Marina Haukness, Hickey, Glenn +95 more

Papers

Driven by 36 papers — median percentile 68. Top paper: “A robust benchmark for detection of germline large deletions and insertions”.

A robust benchmark for detection of germline large deletions and insertions

Nature Biotechnology(2020)10.1038/s41587-020-0538-8

N/A

10.3DataRank · unranked

486 citations

Nancy F. Hansen, Nathan D. Olson, Lesley M. Chapman, James C. Mullikin, Chunlin Xiao +45 more

A draft human pangenome reference

Nature(2023)10.1038/s41586-023-05896-x

Top 4%

5.1DataRank

Top 4%1169 citations

Mobin Asri, Jana Ebler, Daniel Doerr, Marina Haukness, Hickey, Glenn +95 more

Pangenome graph construction from genome alignments with Minigraph-Cactus

Nature Biotechnology(2023)10.1038/s41587-023-01793-w

N/A

5.0DataRank · unranked

318 citations

Jean Monlong, Jana Ebler, Adam M. Novak, Jordan M. Eizenga, Yan Gao +94 more

Benchmarking challenging small variants with linked and long reads

Cell Genomics(2022)10.1016/j.xgen.2022.100128

Top 4%

4.9DataRank

Top 4%212 citations

Nathan D. Olson, Lindsay Harris, Ziad Khan, Jesse Farek, Medhat Mahmoud +36 more

Benchmarking challenging small variants with linked and long reads

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.24.212712

Top 11%

2.0DataRank

Top 11%60 citations

Nathan D. Olson, Lindsay Harris, Jennifer McDaniel, Ziad Khan, Jesse Farek +37 more

A diploid assembly-based benchmark for variants in the major histocompatibility complex

Nature Communications(2020)10.1038/s41467-020-18564-9

Top 11%

2.0DataRank

Top 11%102 citations

Justin Wagner, Qiandong Zeng, Erik Garrison, Shilpa Garg, Arkarachai Fungtammasan +21 more

precisionFDA Truth Challenge V2: Calling variants from short- and long-reads in difficult-to-map regions

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.13.380741

Top 11%

2.0DataRank

Top 11%67 citations

Justin Wagner, Jennifer McDaniel, Sarah H. Stephens, Samuel T. Westreich, Anish G. Prasanna +68 more

A complete diploid human genome benchmark for personalized genomics

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.21.677443

Top 32%

0.611DataRank

Top 32%23 citations

Nathan Dwarshuis, Hyun Joo Ji, Arang Rhie, Hailey Loucks, Glennis A. Logsdon +60 more

A crowdsourced set of curated structural variants for the human genome

PLoS Computational Biology(2020)10.1371/journal.pcbi.1007933

Top 40%

0.482DataRank

Top 40%14 citations

Noah Spies, Patrick Pai, Chun Shen Lim, Andrew Carroll, Giuseppe Narzisi +19 more

Pan-conserved segment tags identify ultra-conserved sequences across assemblies in the human pangenome

Cell Reports Methods(2023)10.1016/j.crmeth.2023.100543

Top 50%

0.352DataRank

Top 50%6 citations

Stephanie Greer, Dmitri S. Pavlichin, Bo Zhou, Alexander E. Urban, Tsachy Weissman +94 more

The Platinum Pedigree: A long-read benchmark for genetic variants

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.02.616333

Top 53%

0.321DataRank

Top 53%6 citations

C. Nolan, Tom Mokveld, William J. Rowell, S. Y. Lee, Egor Dolzhenko +26 more

Small variant benchmark from a complete assembly of X and Y chromosomes

Nature Communications(2025)10.1038/s41467-024-55710-z

Top 54%

0.312DataRank

Top 54%7 citations

Nathan D. Olson, Jennifer McDaniel, Lindsay Harris, Brendan J. Pinto, David Jáspez +22 more

Characterization of subclonal variants in HG002 Genome in a Bottle reference material as a resource for benchmarking variant callers

Cell Genomics(2025)10.1016/j.xgen.2025.101104

Top 65%

0.208DataRank

Top 65%3 citations

Adetola A. Abdulkadir, Megan H. Cleveland, Jennifer McDaniel, David Jáspez, Luis Alberto Rubio-Rodríguez +33 more

Unsupervised representation learning improves genomic discovery and risk prediction for respiratory and circulatory functions and diseases

medRxiv(2023)10.1101/2023.04.28.23289285

N/A

0DataRank · unranked

4 citations

Justin Cosentino, Babak Behsaz, Zachary R. McCaw, Davin Hill, Robert Luben +12 more

Local read haplotagging enables accurate long-read small variant calling

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.07.556731

N/A

0DataRank · unranked

4 citations

Daniel E. Cook, Maria Nattestad, Brandy McNulty, John E. Gorzynski, Sneha D. Goenka +8 more

Personalized Pangenome References

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.13.571553

N/A

0DataRank · unranked

4 citations

Parsa Eskandar, Matteo Tommaso Ungaro, Hickey, Glenn, Jordan M. Eizenga, Adam M. Novak +7 more

Unsupervised representation learning on high-dimensional clinical data improves genomic discovery and prediction

Nature Genetics(2024)10.1038/s41588-024-01831-6

N/A

0DataRank · unranked

38 citations

Justin Cosentino, Babak Behsaz, Zachary R. McCaw, Davin Hill, Robert Luben +12 more

Personalized pangenome references

Nature Methods(2024)10.1038/s41592-024-02407-2

N/A

0DataRank · unranked

30 citations

Parsa Eskandar, Matteo Tommaso Ungaro, Hickey, Glenn, Jordan M. Eizenga, Adam M. Novak +7 more

Local read haplotagging enables accurate long-read small variant calling

Nature Communications(2024)10.1038/s41467-024-50079-5

N/A

0DataRank · unranked

20 citations

Daniel E. Cook, Maria Nattestad, Lucas Brambrink, Brandy McNulty, John E. Gorzynski +9 more

Severus: accurate detection and characterization of somatic structural variation in tumor genomes using long reads

medRxiv(2024)10.1101/2024.03.22.24304756

N/A

0DataRank · unranked

21 citations

Asher Bryant, Tanveer Ahmad, Byunggil Yoo, Sergey Aganezov, Anton Goretsky +33 more

DeepSomatic: Accurate somatic small variant discovery for multiple sequencing technologies

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.08.16.608331

N/A

0DataRank · unranked

19 citations

Daniel E. Cook, Pi-Chuan Chang, Alexey Kolesnikov, Lucas Brambrink, Juan Carlos Mier +26 more

Utilizing multimodal AI to improve genetic analyses of cardiovascular traits

medRxiv(2024)10.1101/2024.03.19.24304547

N/A

0DataRank · unranked

3 citations

Justin Cosentino, Taedong Yun, Mahantesh I. Biradar, Jacqueline Baras Shreibati, Dongbing Lai +14 more

Severus detects somatic structural variation and complex rearrangements in cancer genomes using long-read sequencing

Nature Biotechnology(2025)10.1038/s41587-025-02618-8

N/A

0DataRank · unranked

28 citations

Asher Bryant, Tanveer Ahmad, Byunggil Yoo, Sergey Aganezov, Anton Goretsky +36 more

Highly accurate assembly polishing with DeepPolisher

Genome Research(2025)10.1101/gr.280149.124

N/A

0DataRank · unranked

8 citations

Mobin Asri, Lucas Brambrink, Prajna Hebbar, Alexey Kolesnikov, Daniel E. Cook +8 more

Genotyping common, large structural variations in 5,202 genomes using pangenomes, the Giraffe mapper, and the vg toolkit

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.04.412486

N/A

0DataRank · unranked

30 citations

Jean Monlong, Xian Chang, Adam M. Novak, Jordan M. Eizenga, Charles Markello +15 more

Pangenomics enables genotyping of known structural variants in 5202 diverse genomes

Science(2021)10.1126/science.abg8871

N/A

0DataRank · unranked

419 citations

Jean Monlong, Xian Chang, Adam M. Novak, Jordan M. Eizenga, Charles Markello +15 more

Haplotype-aware variant calling with PEPPER-Margin-DeepVariant enables high accuracy in nanopore long-reads

Nature Methods(2021)10.1038/s41592-021-01299-w

N/A

0DataRank · unranked

332 citations

Trevor Pesout, Pi-Chuan Chang, Maria Nattestad, Alexey Kolesnikov, Sidharth Goel +9 more

Hidden biases in germline structural variant detection

Genome biology(2021)10.1186/s13059-021-02558-x

N/A

0DataRank · unranked

42 citations

Sayed Mohammad Ebrahim Sahraeian, Samantha Zarate, Andrew Carroll, Huixiao Hong, Bohu Pan +6 more

Neptune: an environment for the delivery of genomic medicine

Genetics in Medicine(2021)10.1038/s41436-021-01230-w

N/A

0DataRank · unranked

8 citations

Victoria Yi, David R. Murdock, Sara E. Kalla, Tsung-Jung Wu, Aniko Sabo +93 more

A Complete Pedigree-Based Graph Workflow for Rare Candidate Variant Analysis

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.24.469912

N/A

0DataRank · unranked

2 citations

Charles Huang, Álex Rodríguez, Andrew Carroll, Pi-Chuan Chang, Jordan M. Eizenga +4 more

Accelerated identification of disease-causing variants with ultra-rapid nanopore genome sequencing

Nature Biotechnology(2022)10.1038/s41587-022-01221-5

N/A

0DataRank · unranked

121 citations

John E. Gorzynski, Kishwar Shafin, Dianna G. Fisk, Trevor Pesout, Tanner Jensen +24 more

Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies

Genome biology(2022)10.1186/s13059-022-02816-6

N/A

0DataRank · unranked

46 citations

Tsai-Wei Shen, Xiongfong Chen, Erich Jaeger, Zhipan Li, Zhong Chen +34 more

A complete pedigree-based graph workflow for rare candidate variant analysis

Genome Research(2022)10.1101/gr.276387.121

N/A

0DataRank · unranked

6 citations

Charles Huang, Álex Rodríguez, Andrew Carroll, Pi-Chuan Chang, Jordan M. Eizenga +4 more

Leveraging deep-learning on raw spirograms to improve genetic understanding and risk scoring of COPD despite noisy labels

medRxiv(2022)10.1101/2022.09.12.22279863

N/A

0DataRank · unranked

1 citations

Babak Behsaz, Babak Alipanahi, Zachary R. McCaw, Davin Hill, Tae‐Hwi Schwantes‐An +7 more

A deep-learning-based RNA-seq germline variant caller

Bioinformatics Advances(2023)10.1093/bioadv/vbad062

N/A

0DataRank · unranked

13 citations

Aarti Venkat, Dennis Yelizarov, Yannick Pouliot, Pi-Chuan Chang, Andrew Carroll +2 more

The Complete Sequence and Comparative Analysis of Ape Sex Chromosomes

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.30.569198

N/A

0DataRank · unranked

24 citations

Brandon D. Pickett, Robert S. Harris, Gabrielle A. Hartley, Monika Čechová, Karol Pal +78 more

Andrew Carroll

Indexed papers

Top data-sharing exemplar

Papers