Sam Kovaka

Also affiliated with Johns Hopkins Medicine

Biochemistry, Genetics and Molecular BiologyComputer ScienceEngineering

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 11 papers. Top paper: “Targeted nanopore sequencing by real-time mapping of raw electrical signal with UNCALLED”.

Targeted nanopore sequencing by real-time mapping of raw electrical signal with UNCALLED

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.03.931923

N/A

0DataRank · unranked

51 citations

Yunfan Fan, Bohan Ni, Winston Timp, Michael C. Schatz, Sam Kovaka

High resolution copy number inference in cancer using short-molecule nanopore sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.28.424602

N/A

0DataRank · unranked

8 citations

Sam Kovaka, Fritz J. Sedlazeck, Yanming Zhang, Robert Wappel, Scott W. Lowe +3 more

Pan-genomic matching statistics for targeted nanopore sequencing

iScience(2021)10.1016/j.isci.2021.102696

N/A

0DataRank · unranked

53 citations

Massimiliano Rossi, Sam Kovaka, Michael C. Schatz, Travis Gagie, Christina Boucher +2 more

High resolution copy number inference in cancer using short-molecule nanopore sequencing

Nucleic Acids Research(2021)10.1093/nar/gkab812

N/A

0DataRank · unranked

24 citations

Sam Kovaka, Fritz J. Sedlazeck, Yanming Zhang, Robert Wappel, Sha Tian +4 more

Approaching complete genomes, transcriptomes and epi-omes with accurate long-read sequencing

Nature Methods(2023)10.1038/s41592-022-01716-8

N/A

0DataRank · unranked

78 citations

Shujun Ou, Katharine M. Jenike, Michael C. Schatz, Sam Kovaka

A common flanking variant is associated with enhanced stability of the FGF14-SCA27B repeat locus

Nature Genetics(2024)10.1038/s41588-024-01808-5

N/A

0DataRank · unranked

34 citations

Giulia Gobbo, Madeline Couse, Egor Dolzhenko, Sathiji Nageshwaran, Warren Cheung +95 more

Sigmoni: classification of nanopore signal with a compressed pangenome index

Bioinformatics(2024)10.1093/bioinformatics/btae213

N/A

0DataRank · unranked

27 citations

Omar Ahmed, Sam Kovaka, Mohsen Zakeri, Ben Langmead, Vikram S Shivakumar

Uncalled4 improves nanopore DNA and RNA modification detection via fast and accurate signal alignment

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.05.583511

N/A

0DataRank · unranked

17 citations

Paul W. Hook, Katharine M. Jenike, Vikram S. Shivakumar, Luke B Morina, Roham Razaghi +3 more

MEM-based pangenome indexing for k -mer queries

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.20.595044

N/A

0DataRank · unranked

0 citations

Nathaniel K. Brown, Omar Ahmed, Katharine M. Jenike, Sam Kovaka, Michael C. Schatz +2 more

Uncalled4 improves nanopore DNA and RNA modification detection via fast and accurate signal alignment

Nature Methods(2025)10.1038/s41592-025-02631-4

N/A

0DataRank · unranked

49 citations

Paul W. Hook, Katharine M. Jenike, Vikram S. Shivakumar, Luke B Morina, Roham Razaghi +3 more

Mem-based pangenome indexing for k-mer queries

Algorithms for Molecular Biology(2025)10.1186/s13015-025-00272-y

N/A

0DataRank · unranked

1 citations

Nathaniel K. Brown, Omar Ahmed, Katharine M. Jenike, Sam Kovaka, Michael C. Schatz +2 more