Paul C. Blainey

Also affiliated with Allen Institute, Koch Institute for Integrative Cancer Research At MIT, Massachusetts Institute of Technology

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 32 papers. Top paper: “An immune-cell signature of bacterial sepsis”.

An immune-cell signature of bacterial sepsis

Nature Medicine(2020)10.1038/s41591-020-0752-4

N/A

10.2DataRank · unranked

519 citations

Michael R. Filbin, Roby P. Bhattacharyya, Kianna Billman, Thomas Eisenhaure, Deborah T. Hung +6 more

Massively multiplexed nucleic acid detection with Cas13

Nature(2020)10.1038/s41586-020-2279-8

N/A

0.999DataRank · unranked

780 citations

Cameron Myhrvold, Sri Gowtham Thakku, Catherine A. Freije, Hayden C. Metsky, David Yang +13 more

CloneSifter: enrichment of rare clones from heterogeneous cell populations

BMC Biology(2020)10.1186/s12915-020-00911-3

N/A

0.944DataRank · unranked

26 citations

FuNien Tsai, Anthony J. Garrity, Ryan O’Rourke, Lisa Brenan, Patricia Ho +7 more

Induction of a regulatory myeloid program in bacterial sepsis and severe COVID-19

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.02.280180

N/A

0.938DataRank · unranked

16 citations

Michael R. Filbin, Roby P. Bhattacharyya, Abraham Sonny, Arnav Mehta, Kianna Billman +14 more

Catalase activity deficiency sensitizes multidrug-resistant Mycobacterium tuberculosis to the ATP synthase inhibitor bedaquiline

Nature Communications(2024)10.1038/s41467-024-53933-8

N/A

0.534DataRank · unranked

19 citations

Meagan Hamblin, Miranda L Coldren, Barry Li, Gautam Mereddy, Mustafa Shaikh +9 more

Classification and functional characterization of regulators of intracellular STING trafficking identified by genome-wide optical pooled screening

Cell Systems(2024)10.1016/j.cels.2024.11.004

N/A

0.426DataRank · unranked

7 citations

Rebecca J. Carlson, Bingxu Liu, Quentin Hellier, Jocelyn Andrews, Yue Qin +3 more

Plasma from patients with bacterial sepsis or severe COVID-19 induces suppressive myeloid cell production from hematopoietic progenitors in vitro

Science Translational Medicine(2021)10.1126/scitranslmed.abe9599

N/A

0DataRank · unranked

105 citations

Michael R. Filbin, Roby P. Bhattacharyya, Abraham Sonny, Arnav Mehta, Kianna Billman +13 more

The future of antibiotics begins with discovering new combinations

Annals of the New York Academy of Sciences(2021)10.1111/nyas.14649

N/A

0DataRank · unranked

81 citations

Megan W. Tse, Juliane Weller, Julie Chen, Paul C. Blainey, Meilin Zhu

High-throughput RNA isoform sequencing using programmable cDNA concatenation

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.01.462818

N/A

0DataRank · unranked

26 citations

Jonathan T. Smith, Kiran Garimella, Mehrtash Babadi, Moshe Sade-Feldman, Michael Gatzen +14 more

Multiplexed CRISPR-based microfluidic platform for clinical testing of respiratory viruses and identification of SARS-CoV-2 variants

Nature Medicine(2022)10.1038/s41591-022-01734-1

N/A

0DataRank · unranked

306 citations

Meilin Zhu, Catherine Hua, Juliane Weller, Marzieh Ezzaty Mirhashemi, Tien G. Nguyen +45 more

The phenotypic landscape of essential human genes

Cell(2022)10.1016/j.cell.2022.10.017

N/A

0DataRank · unranked

177 citations

Kuan-Chung Su, Jimmy Ly, David Feldman, Avtar Singh, Brittania Moodie +3 more

Designing sensitive viral diagnostics with machine learning

Nature Biotechnology(2022)10.1038/s41587-022-01213-5

N/A

0DataRank · unranked

113 citations

Nicole L. Welch, Priya P. Pillai, Nicholas J. Haradhvala, Laurie Rumker, Sreekar Mantena +9 more

Multiplexed detection of bacterial nucleic acids using Cas13 in droplet microarrays

PNAS Nexus(2022)10.1093/pnasnexus/pgac021

N/A

0DataRank · unranked

33 citations

Cheri M. Ackerman, Cameron Myhrvold, Roby P. Bhattacharyya, Jonathan Livny, Peijun Ma +5 more

Human STING is a proton channel

Science(2023)10.1126/science.adf8974

N/A

0DataRank · unranked

205 citations

Rebecca J. Carlson, Ivan S. Pires, Matteo Gentili, Ellie Feng, Quentin Hellier +5 more

High-throughput RNA isoform sequencing using programmed cDNA concatenation

Nature Biotechnology(2023)10.1038/s41587-023-01815-7

N/A

0DataRank · unranked

180 citations

Jonathan T. Smith, Kiran Garimella, Mehrtash Babadi, Victoria Popic, Moshe Sade-Feldman +14 more

Microscale combinatorial stimulation of human myeloid cells reveals inflammatory priming by viral ligands

Science Advances(2023)10.1126/sciadv.ade5090

N/A

0DataRank · unranked

5 citations

Samantha M. Leff, Matteo Gentili, Nir Hacohen, Paul C. Blainey, Miguel Reyes

Programmable multi-kilobase RNA editing using CRISPR-mediated trans-splicing

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.18.553620

N/A

0DataRank · unranked

19 citations

Kamyab Javanmardi, James S. Griffin, Susan S. Martin, David Yao, Kaisle A. Hill +3 more

Compressed phenotypic screens for complex multicellular models and high-content assays

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.23.525189

N/A

0DataRank · unranked

3 citations

Conner Kummerlowe, Nuo Liu, Walaa E. Kattan, Thomas W. Cheng, Jaime H. Cheah +11 more

Vaginal Lactobacillus fatty acid response mechanisms reveal a metabolite-targeted strategy for bacterial vaginosis treatment

Cell(2024)10.1016/j.cell.2024.07.029

N/A

0DataRank · unranked

57 citations

Matthew W. Frank, Christopher D. Radka, Sarah Jeanfavre, Jiawu Xu, Megan W. Tse +19 more

CROPseq-multi: a universal solution for multiplexed perturbation in high-content pooled CRISPR screens

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.17.585235

N/A

0DataRank · unranked

23 citations

Yue Qin, Bryce P. Kirby, J Owen Andrews, Mikko Taipale, Byunguk Kang +2 more

Systematic deconstruction of myeloid cell signaling in tuberculosis granulomas reveals IFN-γ, TGF-β, and time are associated with conserved myeloid diversity

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.24.595747

N/A

0DataRank · unranked

5 citations

Hannah P. Gideon, Travis K. Hughes, Cal Gunnarson, Pauline Maiello, Douaa Mugahid +13 more

De novo mutations mediate phenotypic switching in an opportunistic human lung pathogen

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.06.579193

N/A

0DataRank · unranked

3 citations

Matthew M. Schaefers, Christina Merakou, K. Mansour, Georgia Lagoudas, Ashley R. Cross +9 more

Massively parallel combination screen reveals small molecule sensitization of antibiotic-resistant Gram-negative ESKAPE pathogens

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.26.586803

N/A

0DataRank · unranked

1 citations

Meilin Zhu, Benjamin Peters, Efrat Hamami, Julie Chen, Kathleen P. Davis +18 more

High-content image-based pooled screens reveal regulators of synaptogenesis

Cell Reports(2025)10.1016/j.celrep.2025.115889

N/A

0DataRank · unranked

2 citations

Thomas Biederer, Paul C. Blainey, Anna Le

De novo mutations mediate phenotypic switching in an opportunistic human lung pathogen

Nature Communications(2025)10.1038/s41467-025-61168-4

N/A

0DataRank · unranked

1 citations

Matthew M. Schaefers, Christina Merakou, Kathryn E. Mansour, Connor D. Ahern, Georgia Lagoudas +11 more

A multimodal atlas of COVID-19 severity identifies hallmarks of dysregulated immunity

medRxiv(2025)10.1101/2025.09.19.25334095

N/A

0DataRank · unranked

0 citations

Pritha Sen, Christopher V. Cosgriff, Jessica Tantivit, Thomas Eisenhaure, Thomas J. LaSalle +61 more

Heterochromatin fidelity is a therapeutic vulnerability in lymphoma and other human cancers

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.31.635709

N/A

0DataRank · unranked

1 citations

Deepak Kumar Jha, Cheng Zhang, Benoît Laurent, Caroline Kubaczka, Arianna Markel +22 more

Single-Cell Transcriptional Profiling of Cells Derived From Regenerating Alveolar Ducts

Frontiers in Medicine(2020)10.3389/fmed.2020.00112

N/A

0DataRank · unranked

5 citations

Robert D. Bennett, Willi L. Wagner, Cristian D. Valenzuela, Andrew B. Servais, Akira Tsuda +9 more

DENT-seq for genome-wide strand-specific identification of DNA single-strand break sites with single-nucleotide resolution

Genome Research(2020)10.1101/gr.265223.120

N/A

0DataRank · unranked

16 citations

Navpreet Ranu, Sarah E. DiIorio, Paul C. Blainey, Joshua J. Elacqua

Random access DNA memory in a scalable, archival file storage system

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.05.936369

N/A

0DataRank · unranked

5 citations

Tyson R. Shepherd, Joseph Berleant, Hellen Huang, Miguel Reyes, Cheri M. Ackerman +3 more

Designing viral diagnostics with model-based optimization

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.28.401877

N/A

0DataRank · unranked

1 citations

Nicole L. Welch, Priya P. Pillai, Nicholas J. Haradhvala, Laurie Rumker, Sreekar Mantena +9 more

Random access DNA memory using Boolean search in an archival file storage system

Nature Materials(2021)10.1038/s41563-021-01021-3

N/A

0DataRank · unranked

143 citations

Tyson R. Shepherd, Joseph Berleant, Hellen Huang, Miguel Reyes, Cheri M. Ackerman +3 more