🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Ronan C. O’Malley

Lawrence Berkeley National Laboratory

ORCID: 0000-0002-4907-0339

Also affiliated with Joint Genome Institute, University of Chicago

Agricultural and Biological SciencesBiochemistry, Genetics and Molecular BiologyEnvironmental Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 11 papers. Top paper: “DNA affinity purification sequencing and transcriptional profiling reveal new aspects of nitrogen regulation in a filamentous fungus”.

DNA affinity purification sequencing and transcriptional profiling reveal new aspects of nitrogen regulation in a filamentous fungus

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2009501118

N/A

0DataRank · unranked

35 citations

Vincent W. Wu, David Kowbel, Juna Lee, Chris Daum, Igor V. Grigoriev +3 more

Aspects of the Neurospora crassa Sulfur Starvation Response Are Revealed by Transcriptional Profiling and DNA Affinity Purification Sequencing

mSphere(2021)10.1128/msphere.00564-21

N/A

0DataRank · unranked

12 citations

Vincent W. Wu, Juna Lee, Chris Daum, Ronan C. O’Malley, N. Louise Glass +1 more

Genome wide profiling of histone H3 lysine 4 methylation during the Chlamydomonas cell cycle reveals stable and dynamic properties of lysine 4 trimethylation at gene promoters and near ubiquitous lysine 4 monomethylation

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.19.460975

N/A

0DataRank · unranked

2 citations

Asli Yildirim, Juying Yan, Yuko Yoshinaga, Matteo Pellegrini, Ronan C. O’Malley +3 more

Aspects of the Neurospora crassa sulfur starvation response are revealed by transcriptional profiling and DNA affinity purification sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.01.450814

N/A

0DataRank · unranked

0 citations

Vincent W. Wu, Juna Lee, Chris Daum, Ronan C. O’Malley, N. Louise Glass +1 more

The role of ATXR6 expression in modulating genome stability and transposable element repression in Arabidopsis

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2115570119

N/A

0DataRank · unranked

28 citations

Zhenhui Zhong, Colette L. Picard, Qikun Liu, J. Truman, Cassidy E. Jacobsen +14 more

The landscape of Chlamydomonas histone H3 lysine 4 methylation reveals both constant features and dynamic changes during the diurnal cycle

The Plant Journal(2022)10.1111/tpj.15948

N/A

0DataRank · unranked

19 citations

Asli Yildirim, Juying Yan, Yuko Yoshinaga, Matteo Pellegrini, Ronan C. O’Malley +3 more

High‐throughput identification of novel heat tolerance genes via genome‐wide pooled mutant screens in the model green alga Chlamydomonas reinhardtii

Plant Cell & Environment(2022)10.1111/pce.14507

N/A

0DataRank · unranked

8 citations

William McHargue, Catherine E. Bailey, Ningning Zhang, Chen Chen, James Eckhardt +8 more

High-throughput Identification of Novel Heat Tolerance Genes via Genome-wide Pooled Mutant Screens in the Model Green Alga Chlamydomonas reinhardtii

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.13.499508

N/A

0DataRank · unranked

1 citations

William McHargue, Catherine E. Bailey, Ningning Zhang, Chen Chen, James Eckhardt +8 more

Integrating chromatin conformation information in a self-supervised learning model improves metagenome binning

PeerJ(2023)10.7717/peerj.16129

N/A

0DataRank · unranked

3 citations

Mansi Chovatia, Rob Egan, Guifen He, Yuko Yoshinaga, Ivan Liachko +3 more

A novel regulator of the fungal phosphate starvation response revealed by transcriptional profiling and DNA affinity purification sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.07.647663

N/A

0DataRank · unranked

0 citations

Vincent W. Wu, David Kowbel, Juna Lee, Chris Daum, Vasanth Singan +4 more

A novel regulator of the fungal phosphate starvation response revealed by transcriptional profiling and DNA affinity purification sequencing

mBio(2025)10.1128/mbio.02023-25

N/A

0DataRank · unranked

0 citations

Vincent W. Wu, David Kowbel, Juna Lee, Chris Daum, Vasanth Singan +4 more