Doyle V. Ward

University of Massachusetts Chan Medical School

Also affiliated with UMass Memorial Medical Center

Biochemistry, Genetics and Molecular BiologyMedicineNursing

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

28.2Author DataRank

Indexed papers

5in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 5 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A framework for human microbiome research

Nature(2012)10.1038/nature11209

Top 2%

8.4DataRank

Top 2%2766 citations

Barbara A. Methé, William Nelson, Mihai Pop, Heather H. Creasy, Michelle Giglio +236 more

Papers

Driven by 34 papers — median percentile 97. Top paper: “A framework for human microbiome research”.

A framework for human microbiome research

Nature(2012)10.1038/nature11209

Top 2%

8.4DataRank

Top 2%2766 citations

Barbara A. Methé, William Nelson, Mihai Pop, Heather H. Creasy, Michelle Giglio +236 more

A high-resolution map of human evolutionary constraint using 29 mammals

Nature(2011)10.1038/nature10530

Top 2%

7.6DataRank

Top 2%1227 citations

Genome Institute at Washington University, Manuel Garber, Or Zuk, Alireza Heravi-Moussavi, Wouter Meuleman +49 more

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

Nature Biotechnology(2011)10.1038/nbt.1823

Top 3%

6.9DataRank

Top 3%815 citations

Renzo Kottmann, Dawn Field, Rob Knight, James R. Cole, Linda Amaral-Zettler +112 more

Comparative validation of the D. melanogaster modENCODE transcriptome annotation

Genome Research(2014)10.1101/gr.159384.113

Top 5%

4.6DataRank

Top 5%192 citations

David Sturgill, Jiaxin Qu, Huaiyang Jiang, Soo Park, Nathan Boley +67 more

Structure, function and diversity of the healthy human microbiome

Nature(2012)10.1038/nature11234

N/A

1.4DataRank · unranked

10088 citations

Curtis Huttenhower, Dirk Gevers, Rob Knight, Sahar Abubucker, Jonathan H. Badger +235 more

The “Minimum Information about an ENvironmental Sequence” (MIENS) specification

Nature Precedings(2010)10.1038/npre.2010.5252.2

Top 30%

0.654DataRank

Top 30%9 citations

Pelin Yilmaz, Renzo Kottmann, Dawn Field, Rob Knight, James Cole +100 more

Differential effects of Akkermansia-enriched fecal microbiota transplant on energy balance in female mice on high-fat diet

Frontiers in Endocrinology(2022)10.3389/fendo.2022.1010806

N/A

0.434DataRank · unranked

17 citations

Randall H. Friedline, Doyle V. Ward, Madeline Graham, LAUREN A. TAUER, Doris Zheng +6 more

The “Minimum Information about an ENvironmental Sequence” (MIENS) specification

Nature Precedings(2010)10.1038/npre.2010.5252

N/A

0.276DataRank · unranked

2 citations

Pelin Yilmaz, Renzo Kottmann, Dawn Field, Rob Knight, James Cole +100 more

The Urinary Microbiome of Older Adults Residing in a Nursing Home Varies With Duration of Residence and Shows Increases in Potential Pathogens

The Journals of Gerontology Series A(2021)10.1093/gerona/glab345

N/A

0DataRank · unranked

8 citations

Brent R. Schell, Doyle V. Ward, Vanni Bucci, Abigail L. Zeamer, John P. Haran +1 more

The epithelial-specific ER stress sensor IRE1β enables host-microbiota crosstalk to affect colon goblet cell development

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.28.453864

N/A

0DataRank · unranked

1 citations

Heidi De Luca, Doyle V. Ward, Irini A. M. Kreulen, Sage E. Foley, Jay R. Thiagarajah +4 more

The epithelial-specific ER stress sensor ERN2/IRE1β enables host-microbiota crosstalk to affect colon goblet cell development

Journal of Clinical Investigation(2022)10.1172/jci153519

N/A

0DataRank · unranked

63 citations

Heidi De Luca, Doyle V. Ward, Irini A. M. Kreulen, Katlynn Bugda Gwilt, Sage E. Foley +5 more

Epithelial HNF4A shapes the intraepithelial lymphocyte compartment via direct regulation of immune signaling molecules

The Journal of Experimental Medicine(2022)10.1084/jem.20212563

N/A

0DataRank · unranked

35 citations

Natália Ketelut-Carneiro, Liraz Shmuel‐Galia, Weili Xu, Ruth Wilson, Tim Vierbuchen +7 more

COVID-19 Variant Surveillance and Social Determinants in Central Massachusetts: Development Study

JMIR Formative Research(2022)10.2196/37858

N/A

0DataRank · unranked

8 citations

Carly Herbert, Doyle V. Ward, Karl Simin, Beth A. McCormick, Richard T. Ellison +2 more

The Gut Resistome during Hematopoietic Stem Cell Transplantation in Children

medRxiv(2022)10.1101/2022.07.07.22277185

N/A

0DataRank · unranked

2 citations

Rebecca R. Young, Kirsten Jenkins, Paul Martin, Andre Stokhuyzen, Doyle V. Ward +7 more

Evolved bacterial resistance to the chemotherapy gemcitabine modulates its efficacy

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.07.506952

N/A

0DataRank · unranked

1 citations

Brittany Rosener, Carmen G Li, Bao Ho, Olga Ponomarova, Doyle V. Ward +3 more

The lncRNA HOXA11os regulates mitochondrial function in myeloid cells to maintain intestinal homeostasis

Cell Metabolism(2023)10.1016/j.cmet.2023.06.019

N/A

0DataRank · unranked

22 citations

Fiachra Humphries, Tim Vierbuchen, Zhaozhao Jiang, N. R. dos Santos, John L. Johnson +12 more

Evolved bacterial resistance to the chemotherapy gemcitabine modulates its efficacy in co-cultured cancer cells

eLife(2023)10.7554/elife.83140

N/A

0DataRank · unranked

26 citations

Brittany Rosener, Carmen G Li, Bao Ho, Olga Ponomarova, Doyle V. Ward +3 more

The intestinal microbiota predicts COVID-19 severity and fatality regardless of hospital feeding method

mSystems(2023)10.1128/msystems.00310-23

N/A

0DataRank · unranked

11 citations

Doyle V. Ward, Shakti K. Bhattarai, Mayra Rojas-Correa, Ayan Purkayastha, Devon J. Holler +13 more

Design, Creation, and Use of The Test Us Bank (TUB) COVID-19 Sample Biorepository

Research Square(2023)10.21203/rs.3.rs-3587006/v1

N/A

0DataRank · unranked

0 citations

Chad J. Achenbach, S. Behar, Laurel O’Connor, Seanan Tarrant, Julia Ferranto +46 more

The effects of antibiotic exposures on the gut resistome during hematopoietic cell transplantation in children

Gut Microbes(2024)10.1080/19490976.2024.2333748

N/A

0DataRank · unranked

18 citations

Rebecca R. Young, Kirsten Jenkins, Paul L. Martin, Andre Stokhuyzen, Doyle V. Ward +7 more

Succinate-producing microbiota drives tuft cell hyperplasia to protect against Clostridioides difficile

The Journal of Experimental Medicine(2024)10.1084/jem.20232055

N/A

0DataRank · unranked

14 citations

Simona Ceglia, Benedikt M. Mortzfeld, Tanvi M. Tanna, Abigail L. Zeamer, Matthew R. Mancini +7 more

Design, creation, and use of the Test Us Bank (TUB) COVID-19 sample biorepository

BMC Infectious Diseases(2024)10.1186/s12879-024-10154-0

N/A

0DataRank · unranked

1 citations

Chad J. Achenbach, S. Behar, Laurel O’Connor, Seanan Tarrant, Julia Ferranto +46 more

Microbiota encoded fatty-acid metabolism expands tuft cells to protect tissues homeostasis during Clostridioides difficile infection in the large intestine

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.29.574039

N/A

0DataRank · unranked

2 citations

Simona Ceglia, Benedikt M. Mortzfeld, Abigail L. Zeamer, Sage E. Foley, Doyle V. Ward +5 more

ADAM-1: An AI Reasoning and Bioinformatics Model for Alzheimer’s Disease Detection and Microbiome-Clinical Data Integration

IEEE Access(2025)10.1109/access.2025.3599857

N/A

0DataRank · unranked

6 citations

Vishaldeep Kaur Sekhon, Roozbeh Sadeghian, Maria Vaida, Cheorun Jo, Beth A. McCormick +4 more

ADAM: An AI Reasoning and Bioinformatics Model for Alzheimer's Disease Detection and Microbiome-Clinical Data Integration

arXiv (Cornell University)(2025)10.48550/arxiv.2501.08324

N/A

0DataRank · unranked

0 citations

Vishaldeep Kaur Sekhon, Roozbeh Sadeghian, Maria L. Vaida, Cheorun Jo, Doyle V. Ward +3 more

Disseminated gonococcal infection secondary to a rare homozygous mutation resulting in complement factor I deficiency

Journal of Human Immunity(2025)10.70962/jhi.20250088

N/A

0DataRank · unranked

0 citations

Gary W. Welch, Emma Vanderleeden, Jutamas Shaughnessy, Qadija Qadri, Doyle V. Ward +4 more

Effects of a single oral dose of azithromycin in laboring women on antimicrobial resistance (AMR) and the microbiome: a protocol for the Antimicrobial Resistance Sub-Study of the A-PLUS trial

Gates Open Research(2025)10.12688/gatesopenres.15992.2

N/A

0DataRank · unranked

0 citations

Denise C. Babineau, Janet Moore, Akila Subramaniam, Alan Tita, Elwyn Chomba +33 more

Anaerobic Antibiotics and the Risk of Graft-versus-Host Disease after Allogeneic Hematopoietic Stem Cell Transplantation

Biology of Blood and Marrow Transplantation(2020)10.1016/j.bbmt.2020.07.011

N/A

0DataRank · unranked

59 citations

Rebecca R. Young, Sarah M. Heston, Kirsten Jenkins, Lisa P. Spees, Anthony D. Sung +13 more

174. Shotgun Metagenomics and Colonization by Antibiotic-resistant Bacteria in Pediatric Hematopoietic Stem Cell Transplant Recipients

Open Forum Infectious Diseases(2020)10.1093/ofid/ofaa439.484

N/A

0DataRank · unranked

2 citations

Rebecca R Young, Mehreen Arshad, Kirsten Jenkins, Paul Martin, Doyle V. Ward +5 more

Inflammation-type dysbiosis of the oral microbiome associates with the duration of COVID-19 symptoms and long COVID

JCI Insight(2021)10.1172/jci.insight.152346

N/A

0DataRank · unranked

171 citations

Evan S. Bradley, Abigail L. Zeamer, Lindsey Cincotta, Marie-Claire Salive, Protiva Dutta +8 more

Dysbiosis exacerbates colitis by promoting ubiquitination and accumulation of the innate immune adaptor STING in myeloid cells

Immunity(2021)10.1016/j.immuni.2021.05.008

N/A

0DataRank · unranked

142 citations

Fiachra Humphries, Xuqiu Lei, Simona Ceglia, Ruth Wilson, Zhaozhao Jiang +12 more

Gut microbiota regulation of P-glycoprotein in the intestinal epithelium in maintenance of homeostasis

Microbiome(2021)10.1186/s40168-021-01137-3

N/A

0DataRank · unranked

118 citations

Christine Tuohy, Merran Dunford, Michael J. Grey, Heidi De Luca, Caitlin Cawley +7 more

The Nursing Home Older Adult Gut Microbiome Composition Shows Time-dependent Dysbiosis and Is Influenced by Medication Exposures, Age, Environment, and Frailty

The Journals of Gerontology Series A(2021)10.1093/gerona/glab167

N/A

0DataRank · unranked

30 citations

Abigail L. Zeamer, Doyle V. Ward, Protiva Dutta, Vanni Bucci, Beth A. McCormick +1 more

Effect of Levodopa Initiation on the Gut Microbiota in Parkinson's Disease

Frontiers in Neurology(2021)10.3389/fneur.2021.574529

N/A

0DataRank · unranked

30 citations

Anas Hannoun, Julie Flahive, Doyle V. Ward, Kelsey Goostrey, Anindita Deb +2 more

Doyle V. Ward

Indexed papers

Top data-sharing exemplar

Papers