Adam P. Arkin

Lawrence Berkeley National Laboratory

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 7%percentile

0.165Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

KBase: Open-source platform for collaborative biological data analysis and publication

Journal of Molecular Biology(2026)10.1016/j.jmb.2026.169676

Top 70%

0.165DataRank

Top 70%2 citations

Christopher Henry, Paramvir Dehal, Gazi Mahmud, Ben Allen, Kathleen Bielsmith +39 more

Papers

Driven by 24 papers — median percentile 30. Top paper: “Redefining fundamental concepts of transcription initiation in bacteria”.

Redefining fundamental concepts of transcription initiation in bacteria

Nature Reviews Genetics(2020)10.1038/s41576-020-0254-8

N/A

3.5DataRank · unranked

157 citations

Stephen Busby, Joseph T. Wade, Jacques van Helden, Adam P. Arkin, Gary D. Stormo +5 more

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

PLoS ONE(2010)10.1371/journal.pone.0009490

N/A

1.4DataRank · unranked

15715 citations

Adam P. Arkin, Paramvir Dehal, Morgan N. Price

Large-scale genetic characterization of the model sulfate-reducing bacterium, Desulfovibrio vulgaris Hildenborough

Frontiers in Microbiology(2023)10.3389/fmicb.2023.1095191

N/A

0.674DataRank · unranked

16 citations

Maxim Shatsky, Morgan N. Price, Thomas R. Juba, Grant M. Zane, Kara B. De León +11 more

Multicopy suppressor screens reveal convergent evolution of single-gene lysis proteins

Nature Chemical Biology(2023)10.1038/s41589-023-01269-7

N/A

0.580DataRank · unranked

19 citations

Karthik R. Chamakura, Héloïse Carion, Jonathan Krog, Adam M. Deutschbauer, Ry Young +3 more

Systematic Discovery of Pseudomonad Genetic Factors Involved in Sensitivity to Tailocins

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.27.113977

N/A

0.537DataRank · unranked

10 citations

Ashley L Azadeh, Alexey E. Kazakov, Morgan N. Price, Peter J. Walian, Romy Chakraborty +4 more

Ecogenomics of Groundwater Phages Suggests Niche Differentiation Linked to Specific Environmental Tolerance

mSystems(2021)10.1128/msystems.00537-21

N/A

0.442DataRank · unranked

18 citations

Simon Roux, Hanqiao Zhang, Anatori Prieto, Drishti Soneja, John‐Marc Chandonia +10 more

Global Analysis of Biomineralization Genes in Magnetospirillum magneticum AMB-1

mSystems(2022)10.1128/msystems.01037-21

N/A

0.292DataRank · unranked

6 citations

Kelly M. Wetmore, Adam P. Arkin, Arash Komeili, Hayley C. McCausland

Acetaminophen production in the edible, filamentous cyanobacterium Arthrospira platensis

Biotechnology and Bioengineering(2024)10.1002/bit.28858

N/A

0.241DataRank · unranked

4 citations

Skyler Friedline, Divya Sivanandan, Ya‐Fang Cheng, Shunsuke Yamazaki, Douglas S. Clark +3 more

KBase: Open-source platform for collaborative biological data analysis and publication

Journal of Molecular Biology(2026)10.1016/j.jmb.2026.169676

Top 70%

0.165DataRank

Top 70%2 citations

Christopher Henry, Paramvir Dehal, Gazi Mahmud, Ben Allen, Kathleen Bielsmith +39 more

Mapping the genetic landscape of biomineralization in Magnetospirillum magneticum AMB-1 with RB-Tnseq

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.13.456315

N/A

0.127DataRank · unranked

1 citations

Kelly M. Wetmore, Adam P. Arkin, Arash Komeili, Hayley C. McCausland

The genetic basis of phage susceptibility, cross-resistance and host-range in Salmonella

Microbiology(2021)10.1099/mic.0.001126

N/A

0DataRank · unranked

61 citations

Alexey E. Kazakov, Crystal Zhong, Hualan Liu, Elizabeth Kutter, Lauren Michelle Lui +6 more

Production of PHB From CO2-Derived Acetate With Minimal Processing Assessed for Space Biomanufacturing

Frontiers in Microbiology(2021)10.3389/fmicb.2021.700010

N/A

0DataRank · unranked

44 citations

Skyler Friedline, Kyle B. Sander, Anthony J. Abel, Ji Min Kim, Douglas S. Clark +3 more

High-throughput mapping of the phage resistance landscape in E. coli

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.15.951020

N/A

0DataRank · unranked

12 citations

Benjamin A. Adler, Harneet S. Rishi, Denish Piya, Crystal Zhong, Britt Koskella +6 more

Parallel multicopy-suppressor screens reveal convergent evolution of phage-encoded single gene lysis proteins

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.20.477139

N/A

0DataRank · unranked

2 citations

Karthik R. Chamakura, Héloïse Carion, Jonathan Krog, Adam M. Deutschbauer, Ry Young +3 more

Acetaminophen production in the edible, filamentous cyanobacterium Arthrospira platensis

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.30.498297

N/A

0DataRank · unranked

1 citations

Skyler Friedline, Divya Sivanandan, Ya-Fang Cheng, Shunsuke Yamazaki, Douglas S. Clark +3 more

Quantifying the local adaptive landscape of a nascent bacterial community

Nature Communications(2023)10.1038/s41467-022-35677-5

N/A

0DataRank · unranked

445 citations

Kelly M. Wetmore, Benjamin H. Good, Adam P. Arkin, Oskar Hallatschek, Joao A Ascensao

Systematic genome-wide querying of coding and non-coding functional elements in E. coli using CRISPRi

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.04.975888

N/A

0DataRank · unranked

25 citations

Esteban Toro, Honglei Liu, Xiaowo Wang, Lei S. Qi, Adam P. Arkin +1 more

High-throughput protein characterization by complementation using DNA barcoded fragment libraries

Molecular Systems Biology(2024)10.1038/s44320-024-00068-z

N/A

0DataRank · unranked

5 citations

Morgan N. Price, Dexter Lai, Jasmine Escobedo, Yuridia Fortanel, Yolanda Y. Huang +8 more

Barcoded overexpression screens in gut Bacteroidales identify genes with roles in carbon utilization and stress resistance

Nature Communications(2024)10.1038/s41467-024-50124-3

N/A

0DataRank · unranked

11 citations

Morgan N. Price, Allison Hung, Omree Gal-Oz, Surya Tripathi, Christopher W. Smith +5 more

The Genetic Basis of phage susceptibility, cross-resistance and host-range in Salmonella

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.27.058388

N/A

0DataRank · unranked

9 citations

Alexey E. Kazakov, Crystal Zhong, Hualan Liu, Elizabeth Kutter, Lauren Michelle Lui +6 more

Construction of a randomly barcoded insertional mutant library in the filamentous fungus Trichoderma atroviride

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.30.691285

N/A

0DataRank · unranked

1 citations

José Manuel Villalobos‐Escobedo, Jeffrey M. Skerker, Ran Shi, Adriana M. Rico-Ramírez, Catharine A. Adams +4 more

Ecogenomics of groundwater viruses suggests niche differentiation linked to specific environmental tolerance

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.14.203604

N/A

0DataRank · unranked

0 citations

Simon Roux, Hanqiao Zhang, Anatori Prieto, Drishti Soneja, John‐Marc Chandonia +10 more

Functional genetics of human gut commensal Bacteroides thetaiotaomicron reveals metabolic requirements for growth across environments

Cell Reports(2021)10.1016/j.celrep.2021.108789

N/A

0DataRank · unranked

168 citations

Anthony L. Shiver, Morgan N. Price, Hans K. Carlson, Valentine V. Trotter, Yan Chen +9 more

Systematic discovery of pseudomonad genetic factors involved in sensitivity to tailocins

The ISME Journal(2021)10.1038/s41396-021-00921-1

N/A

0DataRank · unranked

74 citations

Ashley L Azadeh, Alexey E. Kazakov, Morgan N. Price, Peter J. Walian, Lauren Michelle Lui +6 more

Adam P. Arkin

Indexed papers

Top data-sharing exemplar

Papers