🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Jakob McBroome

University of California, Santa Cruz

ORCID: 0000-0002-5002-5156
Biochemistry, Genetics and Molecular BiologyMedicineAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
4.7Author DataRank

Indexed papers

2in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A Daily-Updated Database and Tools for Comprehensive SARS-CoV-2 Mutation-Annotated Trees

Molecular Biology and Evolution(2021)10.1093/molbev/msab264
Top 6%
3.8DataRank
Top 6%121 citations

Bryan Thornlow, Angie S. Hinrichs, Alexander Krämer, Nicola De Maio, Nick Goldman +4 more

Papers

Driven by 11 papers — median percentile 87. Top paper: “A Daily-Updated Database and Tools for Comprehensive SARS-CoV-2 Mutation-Annotated Trees”.

A Daily-Updated Database and Tools for Comprehensive SARS-CoV-2 Mutation-Annotated Trees

Molecular Biology and Evolution(2021)10.1093/molbev/msab264
Top 6%
3.8DataRank
Top 6%121 citations

Bryan Thornlow, Angie S. Hinrichs, Alexander Krämer, Nicola De Maio, Nick Goldman +4 more

A daily-updated database and tools for comprehensive SARS-CoV-2 mutation-annotated trees

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.03.438321
Top 21%
0.990DataRank
Top 21%18 citations

Bryan Thornlow, Angie S. Hinrichs, Nicola De Maio, Nick Goldman, David Haussler +3 more

Pandemic-Scale Phylogenomics Reveals Elevated Recombination Rates in the SARS-CoV-2 Spike Region

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.04.455157
N/A
0DataRank · unranked
49 citations

Bryan Thornlow, Angie S. Hinrichs, Jakob McBroome, Nicolás Ayala, Cheng Ye +5 more

Online Phylogenetics using Parsimony Produces Slightly Better Trees and is Dramatically More Efficient for Large SARS-CoV-2 Phylogenies than de novo and Maximum-Likelihood Approaches

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.02.471004
N/A
0DataRank · unranked
11 citations

Alexander Krämer, Cheng Ye, Nicola De Maio, Jakob McBroome, Angie S. Hinrichs +4 more

A new SARS-CoV-2 lineage that shares mutations with known Variants of Concern is rejected by automated sequence repository quality control

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.05.438352
N/A
0DataRank · unranked
7 citations

Angie S. Hinrichs, Miten Jain, Namrita Dhillon, Scott La, Joshua D. Kapp +17 more

Pandemic-scale phylogenetics

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.03.470766
N/A
0DataRank · unranked
6 citations

Bryan Thornlow, Alexander Krämer, Jakob McBroome, Angie S. Hinrichs, Russell Corbett‐Detig +2 more

Pandemic-scale phylogenomics reveals the SARS-CoV-2 recombination landscape

Nature(2022)10.1038/s41586-022-05189-9
N/A
0DataRank · unranked
163 citations

Bryan Thornlow, Angie S. Hinrichs, Jakob McBroome, Nicolás Ayala, Cheng Ye +6 more

Identifying SARS-CoV-2 regional introductions and transmission clusters in real time

Virus Evolution(2022)10.1093/ve/veac048
N/A
0DataRank · unranked
25 citations

Jennifer Martin, Adriano de Bernardi Schneider, Yatish Turakhia, Russell Corbett-Detig, Jakob McBroome

Fine-Scale Position Effects Shape the Distribution of Inversion Breakpoints in Drosophila melanogaster

Genome Biology and Evolution(2020)10.1093/gbe/evaa103
N/A
0DataRank · unranked
17 citations

David Liang, Russell Corbett‐Detig, Jakob McBroome

Online Phylogenetics with matOptimize Produces Equivalent Trees and is Dramatically More Efficient for Large SARS-CoV-2 Phylogenies than de novo and Maximum-Likelihood Implementations

Systematic Biology(2023)10.1093/sysbio/syad031
N/A
0DataRank · unranked
21 citations

Bryan Thornlow, Cheng Ye, Nicola De Maio, Jakob McBroome, Angie S. Hinrichs +4 more

One fly–one genome: chromosome-scale genome assembly of a single outbred Drosophila melanogaster

Nucleic Acids Research(2020)10.1093/nar/gkaa450
N/A
0DataRank · unranked
35 citations

Jakob McBroome, Nicholas Maurer, Evan Pepper-Tunick, Nedda F. Saremi, Richard E. Green +3 more