🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

S. Cenk Şahinalp

National Cancer Institute

ORCID: 0000-0002-5050-0682
Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile
2.7Author DataRank

Indexed papers

2in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Pathway and network analysis of more than 2500 whole cancer genomes

Nature Communications(2020)10.1038/s41467-020-14367-0
Top 9%
2.3DataRank
Top 9%117 citations

David Haan, Marta Paczkowska, Lieven P. C. Verbeke, Miguél Vázquez, Abdullah Kahraman +95 more

Papers

Driven by 18 papers — median percentile 72. Top paper: “Pathway and network analysis of more than 2500 whole cancer genomes”.

Pathway and network analysis of more than 2500 whole cancer genomes

Nature Communications(2020)10.1038/s41467-020-14367-0
Top 9%
2.3DataRank
Top 9%117 citations

David Haan, Marta Paczkowska, Lieven P. C. Verbeke, Miguél Vázquez, Abdullah Kahraman +95 more

The evolutionary history of 2,658 cancers

Nature(2020)10.1038/s41586-019-1907-7
N/A
1.1DataRank · unranked
1106 citations

Clemency Jolly, Ignaty Leshchiner, Stefan C. Dentro, Santiago Gonzalez, Daniel Rosebrock +59 more

Crowd-sourced benchmarking of single-sample tumor subclonal reconstruction

Nature Biotechnology(2024)10.1038/s41587-024-02250-y
Top 46%
0.396DataRank
Top 46%13 citations

Maxime Tarabichi, Alex Buchanan, Shadrielle M. G. Espiritu, Hongjiu Zhang, Kaiyi Zhu +83 more

Tumor Phylogeny Topology Inference via Deep Learning

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.07.938852
N/A
0DataRank · unranked
3 citations

Mohammad Haghir Ebrahimabadi, Salem Malikić, Roni Khardon, S. Cenk Şahinalp, Erfan Sadeqi Azer

PhISCS-BnB: A Fast Branch and Bound Algorithm for the Perfect Tumor Phylogeny Reconstruction Problem

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.06.938043
N/A
0DataRank · unranked
2 citations

Farid Rashidi Mehrabadi, Xuan Cindy Li, Salem Malikić, Alejandro A. Schäffer, E. Michael Gertz +8 more

Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes

Cell(2021)10.1016/j.cell.2021.03.009
N/A
0DataRank · unranked
560 citations

Ignaty Leshchiner, Kerstin Haase, Maxime Tarabichi, Jeff Wintersinger, Amit G. Deshwar +64 more

Privacy-preserving genotype imputation in a trusted execution environment

Cell Systems(2021)10.1016/j.cels.2021.08.001
N/A
0DataRank · unranked
37 citations

Can Koçkan, Kaiyuan Zhu, Xiaofeng Wang, S. Cenk Şahinalp, Hyunghoon Cho +1 more

Profiles of expressed mutations in single cells reveal subclonal expansion patterns and therapeutic impact of intratumor heterogeneity

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.26.437185
N/A
0DataRank · unranked
10 citations

Kerrie L. Marie, Eva Pérez‐Guijarro, Salem Malikić, Erfan Sadeqi Azer, Howard H. Yang +14 more

Single-cell methylation sequencing data reveal succinct metastatic migration histories and tumor progression models

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.22.436475
N/A
0DataRank · unranked
2 citations

Xuan Cindy Li, Farid Rashidi Mehrabadi, Alejandro A. Schäffer, Drew Pratt, David R. Crawford +8 more

Single-cell methylation sequencing data reveal succinct metastatic migration histories and tumor progression models

Genome Research(2023)10.1101/gr.277608.122
N/A
0DataRank · unranked
11 citations

Xuan Cindy Li, Farid Rashidi Mehrabadi, Alejandro A. Schäffer, Drew Pratt, David R. Crawford +8 more

Stochastic modeling of single-cell gene expression adaptation reveals non-genomic contribution to evolution of tumor subclones

Cell Systems(2024)10.1016/j.cels.2024.11.013
N/A
0DataRank · unranked
14 citations

Soumitra Pal, Farid Rashidi Mehrabadi, Salem Malikić, Charli Gruen, Antonella Sassano +7 more

Biologically-informed killer cell immunoglobulin-like receptor gene annotation tool

Bioinformatics(2024)10.1093/bioinformatics/btae622
N/A
0DataRank · unranked
2 citations

Ananth Hari, Qing-Hui Zhou, Ibrahim Numanagić, S. Cenk Şahinalp, Michael Ford

Biologically-informed Killer cell immunoglobulin-like receptor (KIR) gene annotation tool

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.08.13.607835
N/A
0DataRank · unranked
1 citations

Ananth Hari, Qing-Hui Zhou, Ibrahim Numanagić, S. Cenk Şahinalp, Michael K.B. Ford

Determining Optimal Placement of Copy Number Aberration Impacted Single Nucleotide Variants in a Tumor Progression History

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.10.584318
N/A
0DataRank · unranked
0 citations

Suraj Joshi, Welles Robinson, Paul F. Robbins, Russell Schwartz, S. Cenk Şahinalp +2 more

Learning-augmented sketching offers improved performance for privacy preserving and secure GWAS

iScience(2025)10.1016/j.isci.2025.112011
N/A
0DataRank · unranked
1 citations

Kaiyuan Zhu, Jieling Cai, Can Koçkan, Natnatee Dokmai, Hyunghoon Cho +3 more

Genotyping of selected germline adaptive immune system loci using short-read sequencing data

Genome Research(2025)10.1101/gr.280314.124
N/A
0DataRank · unranked
2 citations

Ananth Hari, Meredith Yeager, Lisa Mirabello, Stephen Chanock, Ibrahim Numanagić +2 more

Identification of conserved evolutionary trajectories in tumors

Bioinformatics(2020)10.1093/bioinformatics/btaa453
N/A
0DataRank · unranked
22 citations

Raunak Shrestha, Salem Malikić, Colin C. Collins, Kevin Litchfield, Samra Turajlic +2 more

PhISCS-BnB: a fast branch and bound algorithm for the perfect tumor phylogeny reconstruction problem

Bioinformatics(2020)10.1093/bioinformatics/btaa464
N/A
0DataRank · unranked
23 citations

Farid Rashidi Mehrabadi, Salem Malikić, Xuan Cindy Li, Osnat Bartok, Kevin Litchfield +12 more