🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Alberto Perez

University of Florida

ORCID: 0000-0002-5054-5338
Biochemistry, Genetics and Molecular BiologyMaterials ScienceChemistry

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 3%percentile
1.2Author DataRank

Indexed papers

2in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Outcomes of the EMDataResource cryo-EM Ligand Modeling Challenge

Nature Methods(2024)10.1038/s41592-024-02321-7
Top 23%
0.871DataRank
Top 23%18 citations

Andriy Kryshtafovych, Grigore Pintilie, S.K. Burley, Jiri Cerny, Vincent B. Chen +76 more

Papers

Driven by 23 papers — median percentile 64. Top paper: “Outcomes of the EMDataResource cryo-EM Ligand Modeling Challenge”.

Outcomes of the EMDataResource cryo-EM Ligand Modeling Challenge

Nature Methods(2024)10.1038/s41592-024-02321-7
Top 23%
0.871DataRank
Top 23%18 citations

Andriy Kryshtafovych, Grigore Pintilie, S.K. Burley, Jiri Cerny, Vincent B. Chen +76 more

Ranking Peptide Binders by Affinity with AlphaFold**

Angewandte Chemie(2023)10.1002/ange.202213362
N/A
0.870DataRank · unranked
18 citations

Alberto Perez, Liwei Chang

Outcomes of the 2019 EMDataResource model challenge: validation of cryo-EM models at near-atomic resolution

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.12.147033
Top 48%
0.375DataRank
Top 48%7 citations

Andriy Kryshtafovych, Paul D. Adams, Pavel V. Afonine, Matthew L. Baker, Benjamin A. Barad +49 more

Predicting the potential for zoonotic transmission and host associations for novel viruses

Communications Biology(2022)10.1038/s42003-022-03797-9
N/A
0DataRank · unranked
28 citations

Simon J. Anthony, Tracey Goldstein, Kevin J. Olival, Megan Doyle, Nicole R. Gardner +70 more

Structure determination of protein-peptide complexes from NMR chemical shift data using MELD

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2021.12.31.474671
N/A
0DataRank · unranked
16 citations

G.V.T. Swapna, Jingzhou Hao, Li-Chung Ma, Monica J. Roth, G.T. Montelione +2 more

Engineering Highly Thermostable Cas12b via De Novo Structural Analyses for One-Pot Detection of Nucleic Acids

medRxiv(2022)10.1101/2022.10.02.22280626
N/A
0DataRank · unranked
5 citations

Santosh R. Rananaware, Lilia G. Yang, Nicolas C. Macaluso, Julio E. Ocana-Ortiz, Katelyn S. Meister +14 more

Predicting the potential for zoonotic transmission and host associations for novel viruses

Research Square(2022)10.21203/rs.3.rs-846253/v1
N/A
0DataRank · unranked
3 citations

Simon J. Anthony, Tracey Goldstein, Kevin J. Olival, Megan Doyle, Nicole R. Gardner +69 more

Engineering highly thermostable Cas12b via de novo structural analyses for one-pot detection of nucleic acids

Cell Reports Medicine(2023)10.1016/j.xcrm.2023.101037
N/A
0DataRank · unranked
65 citations

Santosh R. Rananaware, Lilia G. Yang, Nicolas C. Macaluso, Julio E. Ocana-Ortiz, Katelyn S. Meister +14 more

Revolutionizing peptide‐based drug discovery: Advances in the post‐AlphaFold era

Wiley Interdisciplinary Reviews Computational Molecular Science(2023)10.1002/wcms.1693
N/A
0DataRank · unranked
47 citations

Arup Mondal, Bhumika Singh, Yisel Martínez‐Noa, Alberto Perez, Liwei Chang

Structure Determination of Challenging Protein–Peptide Complexes Combining NMR Chemical Shift Data and Molecular Dynamics Simulations

Journal of Chemical Information and Modeling(2023)10.1021/acs.jcim.2c01595
N/A
0DataRank · unranked
29 citations

G.V.T. Swapna, María M. López, Laura Klang, Jingzhou Hao, Li-Chung Ma +4 more

GENERALIST: A latent space based generative model for protein sequence families

PLoS Computational Biology(2023)10.1371/journal.pcbi.1011655
N/A
0DataRank · unranked
5 citations

Brooke Emison, Xiaochuan Zhao, Arup Mondal, Alberto Perez, Purushottam D. Dixit +1 more

RNA-Puzzles Round V: blind predictions of 23 RNA structures

Nature Methods(2024)10.1038/s41592-024-02543-9
N/A
0DataRank · unranked
65 citations

Yagoub Adam, Ryszard W. Adamiak, Maciej Antczak, Belisa R. H. de Aquino, Nagendar Goud Badepally +94 more

Protein Retrieval via Integrative Molecular Ensembles (PRIME) through Extended Similarity Indices

Journal of Chemical Theory and Computation(2024)10.1021/acs.jctc.4c00362
N/A
0DataRank · unranked
13 citations

Arup Mondal, Alberto Perez, Ramón Alain Miranda‐Quintana, Lexin Chen

A Computational Pipeline for Accurate Prioritization of Protein‐Protein Binding Candidates in High‐Throughput Protein Libraries

Angewandte Chemie International Edition(2024)10.1002/anie.202405767
N/A
0DataRank · unranked
9 citations

Bhumika Singh, Roland H. Felkner, Anna De Falco, GVT Swapna, G.T. Montelione +3 more

Structural Elucidation of Ubiquitin via Gas-Phase Ion/Ion Cross-Linking Reactions Using Sodium-Cationized Reagents Coupled with Infrared Multiphoton Dissociation

Analytical Chemistry(2024)10.1021/acs.analchem.4c00442
N/A
0DataRank · unranked
6 citations

Arup Mondal, Julia R. Bonney, Alberto Perez, Boone M. Prentice, Woo-Young Kang

A Computational Pipeline for Accurate Prioritization of Protein‐Protein Binding Candidates in High‐Throughput Protein Libraries

Angewandte Chemie(2024)10.1002/ange.202405767
N/A
0DataRank · unranked
2 citations

Bhumika Singh, Roland H. Felkner, Anna De Falco, GVT Swapna, G.T. Montelione +3 more

Sifting Through the Noise: A Computational Pipeline for Accurate Prioritization of Protein-Protein Binding Candidates in High-Throughput Protein Libraries

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.20.576374
N/A
0DataRank · unranked
2 citations

Bhumika Singh, Roland H. Felkner, Anna De Falco, GVT Swapna, G.T. Montelione +3 more

Outcomes of the EMDataResource Cryo-EM Ligand Modeling Challenge

Research Square(2024)10.21203/rs.3.rs-3864137/v1
N/A
0DataRank · unranked
2 citations

Andriy Kryshtafovych, Grigore Pintilie, S.K. Burley, Jiri Cerny, Vincent Chen +76 more

Protein Retrieval via Integrative Molecular Ensembles (PRIME) through extended similarity indices

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.19.585783
N/A
0DataRank · unranked
2 citations

Arup Mondal, Alberto Perez, Ramón Alain Miranda‐Quintana, Lexin Chen

Structural elucidation of ubiquitin via gas-phase ion/ion cross-linking reactions using sodium-cationized reagents coupled with infrared multiphoton dissociation

ChemRxiv(2024)10.26434/chemrxiv-2024-tzspq
N/A
0DataRank · unranked
1 citations

Arup Mondal, Julia R. Bonney, Alberto Perez, Boone M. Prentice, Woo-Young Kang

ATP allosterically regulates an acyl-CoA oxidase

Nature Communications(2025)10.1038/s41467-025-61905-9
N/A
0DataRank · unranked
3 citations

Arup Mondal, Weijie Xu, Valentina Baredes, Hannah E. Connell, Alberto Perez +2 more

Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge

Nature Methods(2021)10.1038/s41592-020-01051-w
N/A
0DataRank · unranked
119 citations

Andriy Kryshtafovych, Paul D. Adams, Pavel V. Afonine, Matthew L. Baker, Benjamin A. Barad +49 more

CryoFold: Determining protein structures and data-guided ensembles from cryo-EM density maps

Matter(2021)10.1016/j.matt.2021.09.004
N/A
0DataRank · unranked
51 citations

Genki Terashi, Chitrak Gupta, Daipayan Sarkar, Gaspard Debussche, Nicholas J. Sisco +11 more