Rachel Karchin

Memorial Sloan Kettering Cancer Center

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

2in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Data from The Genetic Evolution of Treatment-Resistant Cutaneous, Acral, and Uveal Melanomas

(2023)10.1158/1078-0432.c.6530294

Top 100%

0DataRank

Top 100%0 citations

Evan J. Lipson, Jody E. Hooper, Amanda Zucker, Jungeui Hong, Craig M. Bielski +17 more

Papers

Driven by 32 papers — median percentile 0. Top paper: “Durvalumab with platinum-pemetrexed for unresectable pleural mesothelioma: survival, genomic and immunologic analyses from the phase 2 PrE0505 trial”.

Durvalumab with platinum-pemetrexed for unresectable pleural mesothelioma: survival, genomic and immunologic analyses from the phase 2 PrE0505 trial

Nature Medicine(2021)10.1038/s41591-021-01541-0

N/A

3.9DataRank · unranked

137 citations

Valsamo Anagnostou, Zhuoxin Sun, Suzanne E. Dahlberg, Hedy L. Kindler, Noushin Niknafs +22 more

Integrative Tumor and Immune Cell Multi-omic Analyses Predict Response to Immune Checkpoint Blockade in Melanoma

Cell Reports Medicine(2020)10.1016/j.xcrm.2020.100139

N/A

2.3DataRank · unranked

79 citations

Daniel C. Bruhm, Noushin Niknafs, James R. White, Xiaoshan M. Shao, John-William Sidhom +19 more

Integrated genomic analyses of ovarian carcinoma

Nature(2011)10.1038/nature10166

N/A

1.3DataRank · unranked

8094 citations

Debra Bell, Andrew Berchuck, Michael J. Birrer, Jeremy Chien, D. W. Cramer +268 more

Cancer-Specific High-Throughput Annotation of Somatic Mutations: Computational Prediction of Driver Missense Mutations

Cancer Research(2009)10.1158/0008-5472.can-09-1133

N/A

0.927DataRank · unranked

481 citations

Sining Chen, Leyla Isik, Svitlana Tyekucheva, Victor E. Velculescu, Kenneth W. Kinzler +4 more

Persistent mutation burden drives sustained anti-tumor immune responses

Nature Medicine(2023)10.1038/s41591-022-02163-w

N/A

0.747DataRank · unranked

144 citations

Archana Balan, Christopher Cherry, Karlijn Hummelink, Kim Monkhorst, Xiaoshan M. Shao +16 more

Genomic characterization of malignant progression in neoplastic pancreatic cysts

Nature Communications(2020)10.1038/s41467-020-17917-8

N/A

0.744DataRank · unranked

142 citations

Noushin Niknafs, Catherine G. Fischer, Wenzel M. Hackeng, Violeta Beleva Guthrie, Waki Hosoda +33 more

Assessing aneuploidy with repetitive element sequencing

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.1910041117

N/A

0.663DataRank · unranked

82 citations

Joshua D. Cohen, Janine Ptak, Maria Popoli, Joy Schaefer, Natalie Silliman +17 more

Voices in methods development

Nature Methods(2019)10.1038/s41592-019-0585-6

N/A

0.269DataRank · unranked

5 citations

Rosalind Mott Firenze, Clifford Brangwynne, Ibrahim I. Cissé, Oliver Fiehn, Petra Fromme +44 more

Islands of genomic stability in the face of genetically unstable metastatic cancer

PLoS ONE(2024)10.1371/journal.pone.0298490

N/A

0.185DataRank · unranked

2 citations

Jiaying Lai, Alyza Skaist, Yan Zhang, Selina Shiqing K. Teh, Nicholas J. Roberts +8 more

Calibration of computational tools for missense variant pathogenicity classification and ClinGen recommendations for PP3/BP4 criteria

The American Journal of Human Genetics(2022)10.1016/j.ajhg.2022.10.013

N/A

0DataRank · unranked

548 citations

Alicia B. Byrne, Bing Feng, Kymberleigh A. Pagel, Sean D. Mooney, Rachel Karchin +20 more

Pan-Cancer HLA Gene-Mediated Tumor Immunogenicity and Immune Evasion

Molecular Cancer Research(2022)10.1158/1541-7786.mcr-21-0886

N/A

0DataRank · unranked

46 citations

Rachel Karchin, Xutong Gong

HLA class II immunogenic mutation burden predicts response to immune checkpoint blockade

Annals of Oncology(2022)10.1016/j.annonc.2022.03.013

N/A

0DataRank · unranked

19 citations

Justin Huang, Noushin Niknafs, Archana Balan, Christopher Cherry, James R. White +4 more

Sex-specific differences in immunogenomic features of response to immune checkpoint blockade

Frontiers in Oncology(2022)10.3389/fonc.2022.945798

N/A

0DataRank · unranked

13 citations

Xiaoshan M. Shao, Noushin Niknafs, Archana Balan, Gavin Pereira, Kristen A. Marrone +12 more

Evidence-based calibration of computational tools for missense variant pathogenicity classification and ClinGen recommendations for clinical use of PP3/BP4 criteria

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.17.484479

N/A

0DataRank · unranked

34 citations

Alicia B. Byrne, Bing Feng, Kymberleigh A. Pagel, Sean D. Mooney, Rachel Karchin +9 more

Using the ACMG/AMP framework to capture evidence related to predicted and observed impact on splicing: Recommendations from the ClinGen SVI Splicing Subgroup

The American Journal of Human Genetics(2023)10.1016/j.ajhg.2023.06.002

N/A

0DataRank · unranked

315 citations

Miguel de la Hoya, George A. R. Wiggins, Amanda Lindy, Lisa M. Vincent, Michael T. Parsons +28 more

Deep neural networks predict class I major histocompatibility complex epitope presentation and transfer learn neoepitope immunogenicity

Nature Machine Intelligence(2023)10.1038/s42256-023-00694-6

N/A

0DataRank · unranked

91 citations

Yunxiao Yang, Xiaoshan M. Shao, Dipika Singh, Kellie N. Smith, Valsamo Anagnostou +2 more

Three-dimensional genomic mapping of human pancreatic tissue reveals striking multifocality and genetic heterogeneity in precancerous lesions

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.27.525553

N/A

0DataRank · unranked

8 citations

Ashley Kiemen, Mia P. Grahn, André Forjaz, Jaanvi Mahesh Babu, Lily Zheng +36 more

Data from The Genetic Evolution of Treatment-Resistant Cutaneous, Acral, and Uveal Melanomas

(2023)10.1158/1078-0432.c.6530294

Top 100%

0DataRank

Top 100%0 citations

Evan J. Lipson, Jody E. Hooper, Amanda Zucker, Jungeui Hong, Craig M. Bielski +17 more

Data from High-Throughput Prediction of MHC Class I and II Neoantigens with MHCnuggets

(2023)10.1158/2326-6066.c.6550177.v1

N/A

0DataRank · unranked

0 citations

Rohit Bhattacharya, Justin K. Huang, I.K. Ashok Sivakumar, Collin Tokheim, Lily Zheng +10 more

Assessment of the evidence yield for the calibrated PP3/BP4 computational recommendations

Genetics in Medicine(2024)10.1016/j.gim.2024.101213

N/A

0DataRank · unranked

16 citations

Vikas Pejaver, Timothy Bergquist, Leslie G. Biesecker, Alicia B. Byrne, Emily A.W. Nadeau +21 more

Improving transparency of computational tools for variant effect prediction

Nature Genetics(2024)10.1038/s41588-024-01821-8

N/A

0DataRank · unranked

11 citations

PREDRAG RADIVOJAC, Anne H. O’Donnell-Luria, Marc S. Greenblatt, Michael Tolstorukov, Dmitriy Sonkin +1 more

Poly (ADP-ribose) Polymerase Inhibitor Resistance Driven by Emergence of Polyclonal Mutations With Convergent Evolution: A Molecular Tumor Board Discussion

JCO Precision Oncology(2024)10.1200/po.24.00254

N/A

0DataRank · unranked

5 citations

Jaime Wehr, Katerina Karaindrou, Rena R. Xian, Christopher D. Gocke, Ming‐Tseh Lin +35 more

Proteome-Wide Assessment of Clustering of Missense Variants in Neurodevelopmental Disorders Versus Cancer

medRxiv(2024)10.1101/2024.02.02.24302238

N/A

0DataRank · unranked

4 citations

Yilin Chen, Titilope M. Akinwe, Hillary B. Heins, Elvisa Mehinovic, Yoonhoo Chang +5 more

Calibration of additional computational tools expands ClinGen recommendation options for variant classification with PP3/BP4 criteria

Genetics in Medicine(2025)10.1016/j.gim.2025.101402

N/A

0DataRank · unranked

45 citations

Sarah L. Stenton, Emily A.W. Nadeau, Alicia B. Byrne, Marc S. Greenblatt, Steven M. Harrison +20 more

Spatial proteomics and transcriptomics reveal early immune cell organization in pancreatic intraepithelial neoplasia

JCI Insight(2025)10.1172/jci.insight.191595

N/A

0DataRank · unranked

10 citations

Jacob T. Mitchell, Sidharth Raghavan, Luciane T. Kagohara, Amanda L. Huff, Saurav D. Haldar +29 more

Proteome-wide assessment of differential missense variant clustering in neurodevelopmental disorders and cancer

Cell Genomics(2025)10.1016/j.xgen.2025.100807

N/A

0DataRank · unranked

4 citations

Yilin Chen, Titilope M. Akinwe, Hillary B. Heins, Elvisa Mehinovic, Yoonhoo Chang +7 more

Interpreting the functional impact of genetic variants: The need for context qualifiers

The American Journal of Human Genetics(2025)10.1016/j.ajhg.2025.11.007

N/A

0DataRank · unranked

3 citations

Hélène Cavé, Alessandro De Luca, Marina T. DiStefano, Rachel Karchin, Ana Clara Lugones +8 more

Informatics at the Frontier of Cancer Research

Cancer Research(2025)10.1158/0008-5472.can-24-2829

N/A

0DataRank · unranked

0 citations

Taxiarchis Botsis, Pablo G. Cámara, Lauren Ciotti, Lee Cooper, Jeremy Goecks +19 more

Proteins linked to autosomal dominant and autosomal recessive disorders harbor characteristic rare missense mutation distribution patterns

10.1101/018648

N/A

0DataRank · unranked

0 citations

Christopher Douville, Dewey Kim, Peter D. Stenson, David N. Cooper, Aravinda Chakravarti +2 more

Multiregion whole-exome sequencing of intraductal papillary mucinous neoplasms reveals frequent somatic KLF4 mutations predominantly in low-grade regions

Gut(2020)10.1136/gutjnl-2020-321217

N/A

0DataRank · unranked

85 citations

Waki Hosoda, Matthäus Felsenstein, Qianqian Song, Johannes G. Reiter, Lily Zheng +23 more

Pan-cancer HLA Gene-mediated Tumor Immunogenicity and Immune Evasion

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.17.444511

N/A

0DataRank · unranked

0 citations

Rachel Karchin, Xutong Gong

Estimation of cancer cell fractions and clone trees from multi-region sequencing of tumors

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.12.448194

N/A

0DataRank · unranked

0 citations

Laura D. Wood, Rachel Karchin, Robert B. Scharpf, Lily Zheng

Rachel Karchin

Indexed papers

Top data-sharing exemplar

Papers