Jamshed Khan

Also affiliated with Government of Khyber Pakhtunkhwa

Biochemistry, Genetics and Molecular BiologyComputer SciencePhysics and Astronomy

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 10 papers. Top paper: “Cuttlefish: Fast, parallel, and low-memory compaction of de Bruijn graphs from large-scale genome collections”.

Cuttlefish: Fast, parallel, and low-memory compaction of de Bruijn graphs from large-scale genome collections

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.21.349605

N/A

0DataRank · unranked

6 citations

Rob Patro, Jamshed Khan

Cuttlefish: fast, parallel and low-memory compaction of de Bruijn graphs from large-scale genome collections

Bioinformatics(2021)10.1093/bioinformatics/btab309

N/A

0DataRank · unranked

40 citations

Rob Patro, Jamshed Khan

Scalable, ultra-fast, and low-memory construction of compacted de Bruijn graphs with Cuttlefish 2

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.14.472718

N/A

0DataRank · unranked

7 citations

Marek Kokot, Sebastian Deorowicz, Rob Patro, Jamshed Khan

Scalable, ultra-fast, and low-memory construction of compacted de Bruijn graphs with Cuttlefish 2

Genome biology(2022)10.1186/s13059-022-02743-6

N/A

0DataRank · unranked

54 citations

Marek Kokot, Sebastian Deorowicz, Rob Patro, Jamshed Khan

An incrementally updatable and scalable system for large-scale sequence search using the Bentley–Saxe transformation

Bioinformatics(2022)10.1093/bioinformatics/btac142

N/A

0DataRank · unranked

11 citations

Jamshed Khan, Sergey Madaminov, Michael Ferdman, Rob Johnson, Prashant Pandey +2 more

Spectrum Preserving Tilings Enable Sparse and Modular Reference Indexing

Lecture notes in computer science(2023)10.1007/978-3-031-29119-7_2

N/A

0DataRank · unranked

16 citations

Jamshed Khan, Giulio Ermanno Pibiri, Rob Patro, Jason Fan

Fulgor: A fast and compact k -mer index for large-scale matching and color queries

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.09.539895

N/A

0DataRank · unranked

9 citations

Noor Singh, Jamshed Khan, Giulio Ermanno Pibiri, Rob Patro, Jason Fan

Fulgor: a fast and compact k-mer index for large-scale matching and color queries

Algorithms for Molecular Biology(2024)10.1186/s13015-024-00251-9

N/A

0DataRank · unranked

39 citations

Jamshed Khan, Noor Singh, Giulio Ermanno Pibiri, Rob Patro, Jason Fan

Fast, parallel, and cache-friendly suffix array construction

Algorithms for Molecular Biology(2024)10.1186/s13015-024-00263-5

N/A

0DataRank · unranked

1 citations

Tobias Rubel, Erin K. Molloy, Laxman Dhulipala, Rob Patro, Jamshed Khan

Faster and Scalable Parallel External-Memory Construction of Colored Compacted de Bruijn Graphs with Cuttlefish 3

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.02.02.636161

N/A

0DataRank · unranked

2 citations

Laxman Dhulipala, Prashant Pandey, Rob Patro, Jamshed Khan