Chengyu Liu

Biochemistry, Genetics and Molecular BiologyMedicineImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 60 papers. Top paper: “Regulation of T helper cell differentiation by the interplay between histone modification and chromatin interaction”.

Regulation of T helper cell differentiation by the interplay between histone modification and chromatin interaction

Immunity(2024)10.1016/j.immuni.2024.03.018

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0.815DataRank · unranked

31 citations

Yaqiang Cao, Kairong Cui, Gang Ren, Tingting Zhao, Xuezheng Wang +8 more

Disease-Associated Mutations of the STAT5B SH2 Domain Regulate Cytokine-Driven Enhancer Function and Mammary Development

Journal of Mammary Gland Biology and Neoplasia(2025)10.1007/s10911-025-09582-8

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0.241DataRank · unranked

4 citations

Jakub Jankowski, Chengyu Liu, Lothar Hennighausen, Hye‐Kyung Lee

RTP4 inhibits IFN-I response and enhances experimental cerebral malaria and neuropathology

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.2006492117

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0DataRank · unranked

57 citations

Alison W. Ashbrook, Yang Du, Jian Wu, Hans-Heinrich Hoffmann, Cui Zhang +12 more

Cytosine base editor 4 but not adenine base editor generates off-target mutations in mouse embryos

Communications Biology(2020)10.1038/s42003-019-0745-3

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0DataRank · unranked

53 citations

Harold E. Smith, Chengyu Liu, Michaela Willi, Lothar Hennighausen, Hye‐Kyung Lee

Cysteine 202 of cyclophilin D is a site of multiple post-translational modifications and plays a role in cardioprotection

Cardiovascular Research(2020)10.1093/cvr/cvaa053

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0DataRank · unranked

42 citations

Junhui Sun, Marı́a M. Fergusson, Shane J. McGinty, Chengyu Liu, Jeffery D. Molkentin +2 more

MICU3 Plays an Important Role in Cardiovascular Function

Circulation Research(2020)10.1161/circresaha.120.317177

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28 citations

Junhui Sun, Randi J. Parks, Marı́a M. Fergusson, Chengyu Liu, Danielle Springer +4 more

An induced pluripotent stem cell line (TRNDi001-D) from a Niemann-Pick disease type C1 (NPC1) patient carrying a homozygous p. I1061T (c. 3182T>C) mutation in the NPC1 gene

Stem Cell Research(2020)10.1016/j.scr.2020.101737

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0DataRank · unranked

4 citations

Manisha Pradhan, Miao Xu, Amanda Roeder, Jeanette Beers, Jizhong Zou +4 more

The interdependence of mammary-specific super-enhancers and their native promoters facilitates gene activation during pregnancy

Experimental & Molecular Medicine(2020)10.1038/s12276-020-0425-x

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2 citations

Hye‐Kyung Lee, Chaochen Wang, Precious Achikeh, Chengyu Liu, Lothar Hennighausen +1 more

MLL3/MLL4 methyltransferase activities control early embryonic development and embryonic stem cell differentiation in a lineage-selective manner

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.14.296558

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10 citations

Ji‐Eun Lee, Anna D. Senft, Young-Kwon Park, Shreeta Chakraborty, Joyce J. Thompson +6 more

Regulatory plasticity within a complex cytokine-sensing mammary enhancer during lactation

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.04.134429

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0DataRank · unranked

0 citations

Chengyu Liu, Lothar Hennighausen, Hye‐Kyung Lee

Monitoring mitochondrial calcium and metabolism in the beating MCU-KO heart

Cell Reports(2021)10.1016/j.celrep.2021.109846

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0DataRank · unranked

42 citations

Bárbara Román, Junhui Sun, Armel N. Femnou, Fan Zhang, Chengyu Liu +4 more

CBFB cooperates with p53 to maintain TAp73 expression and suppress breast cancer

PLoS Genetics(2021)10.1371/journal.pgen.1009553

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20 citations

Hualong Yan, Howard H. Yang, Gamze Ayaz, Wendy Dubois, Yu‐Chou Tseng +6 more

Alterations in the spatiotemporal expression of the chemokine receptor CXCR4 in endothelial cells cause failure of hierarchical vascular branching

Developmental Biology(2021)10.1016/j.ydbio.2021.05.008

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15 citations

Chengyu Liu, Nathan G. Burns, Jeffery Hayashi, Atsufumi Yoshida, Aparna Sajja +8 more

Redundant and non-redundant cytokine-activated enhancers control Csn1s2b expression in the lactating mouse mammary gland

Nature Communications(2021)10.1038/s41467-021-22500-w

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0DataRank · unranked

16 citations

Michaela Willi, Tyler Kuhns, Chengyu Liu, Lothar Hennighausen, Hye‐Kyung Lee

Short stature and combined immunodeficiency associated with mutations in RGS10

Science Signaling(2021)10.1126/scisignal.abc1940

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7 citations

Zhihui Xie, Eunice C. Chan, Bianca M. Nagata, Alexey Koval, Wei‐Sheng Chen +13 more

Generation of an induced pluripotent stem cell line (TRNDi031-A) from a patient with Alagille syndrome type 1 carrying a heterozygous p. C312X (c. 936 T > A) mutation in JAGGED-1

Stem Cell Research(2021)10.1016/j.scr.2021.102447

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0DataRank · unranked

4 citations

Manisha Pradhan, Yu‐Shan Cheng, Kirill Gorshkov, Atena Farkhondeh, Catherine Z. Chen +6 more

Generation of Alagille syndrome derived induced pluripotent stem cell line carrying heterozygous mutation in the JAGGED-1 gene at splicing site (Chr20: 10,629,709C>A) before exon 11

Stem Cell Research(2021)10.1016/j.scr.2021.102366

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3 citations

Yu‐Shan Cheng, Miao Xu, Atena Farkhondeh, Jeanette Beers, Jizhong Zou +5 more

Generation of two gene corrected human isogenic iPSC lines (NCATS-CL6104 and NCATS-CL6105) from a patient line (NCATS-CL6103) carrying a homozygous p.R401X mutation in the NGLY1 gene using CRISPR/Cas9

Stem Cell Research(2021)10.1016/j.scr.2021.102554

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0DataRank · unranked

3 citations

Atena Farkhondeh, Shu Yang, Miao Xu, Yu‐Shan Cheng, Jeanette Beers +7 more

An induced pluripotent stem cell line (NCATS-CL9075) from a patient carrying compound heterozygote mutations, p.R390P and p.L318P, in the NGLY1 gene

Stem Cell Research(2021)10.1016/j.scr.2021.102400

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0DataRank · unranked

1 citations

Atena Farkhondeh, Yu‐Shan Cheng, Miao Xu, Jeanette Beers, Jizhong Zou +6 more

Generation of an induced pluripotent stem cell line (TRNDi030-A) from a patient with Farber disease carrying a homozygous p. Y36C (c. 107 A>G) mutation in ASAH1

Stem Cell Research(2021)10.1016/j.scr.2021.102387

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0DataRank · unranked

2 citations

Charles D. Yeh, Jeanette Beers, Chengyu Liu, Yu‐Shan Cheng, Kirill Gorshkov +4 more

Generation of an induced pluripotent stem cell line (TRNDi012-B) from Fibrodysplasia Ossificans Progressiva (FOP) patient carrying a heterozygous mutation c. 617G > A in the ACVR1 gene

Stem Cell Research(2021)10.1016/j.scr.2021.102424

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0DataRank · unranked

0 citations

Amanda Roeder, Rong Li, Jeanette Beers, Chengyu Liu, Jizhong Zou +3 more

Corrigendum to “Generation of two gene corrected human isogenic iPSC lines (NCATS-CL6104 and NCATS-CL6105) from a patient line (NCATS-CL6103) carrying a homozygous p.R401X mutation in the NGLY1 gene using CRISPR/Cas9” [Stem Cell Res. 56 (2021) 102554]

Stem Cell Research(2021)10.1016/j.scr.2021.102602

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0DataRank · unranked

0 citations

Atena Farkhondeh, Shu Yang, Miao Xu, Yu‐Shan Cheng, Jeanette Beers +7 more

Mucus sialylation determines intestinal host-commensal homeostasis

Cell(2022)10.1016/j.cell.2022.02.013

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0DataRank · unranked

237 citations

Girak Kim, Samantha Shafer, Zuojia Chen, Satoshi Kubo, Yanlong Ji +45 more

Gata3ZsG and Gata3ZsG-fl: Novel murine Gata3 reporter alleles for identifying and studying Th2 cells and ILC2s in vivo

Frontiers in Immunology(2022)10.3389/fimmu.2022.975958

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10 citations

Danping Wei, Qiao Yu, Olena Kamenyeva, Hyunwoo Chung, Mingzhu Zheng +6 more

Investigation of the causal etiology in a patient with T-B+NK+ immunodeficiency

Frontiers in Immunology(2022)10.3389/fimmu.2022.928252

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0DataRank · unranked

4 citations

Jian‐Xin Lin, Esteban Martı́nez, Sadhna Rana, Andrew G. Sharo, Majid Kazemian +13 more

Distinct super-enhancer elements differentially control Il2ra gene expression in a cell-type specific fashion

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.18.516445

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0DataRank · unranked

1 citations

Peng Li, Vivek Chandra, Boyoung Shin, Chengyu Liu, Jangsuk Oh +11 more

WASF3 disrupts mitochondrial respiration and may mediate exercise intolerance in myalgic encephalomyelitis/chronic fatigue syndrome

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2302738120

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0DataRank · unranked

35 citations

Jin Ma, Young‐Chae Kim, Annie Y. Son, Abu Mohammad Syed, Chengyu Liu +9 more

Restraint of IFN-γ expression through a distal silencer CNS–28 for tissue homeostasis

Immunity(2023)10.1016/j.immuni.2023.03.006

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0DataRank · unranked

29 citations

Zuojia Chen, Yaqiang Cao, Shuai Liu, Gang Ren, Gangqing Hu +7 more

Loss of mitochondrial Ca2+ uptake protein 3 impairs skeletal muscle calcium handling and exercise capacity

The Journal of Physiology(2023)10.1113/jp284894

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0DataRank · unranked

21 citations

Yusuf Mastoor, Yingfan Zhang, D. Gross, Danielle Springer, Chengyu Liu +3 more

Cell-specific and shared regulatory elements control a multigene locus active in mammary and salivary glands

Nature Communications(2023)10.1038/s41467-023-40712-0

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0DataRank · unranked

19 citations

Michaela Willi, Chengyu Liu, Lothar Hennighausen, Hye‐Kyung Lee

A Protocol for Culture and Characterization of Human Induced Pluripotent Stem Cells After Induction

Current Protocols(2023)10.1002/cpz1.866

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0DataRank · unranked

15 citations

Miao Xu, Guibin Chen, Jeanette Beers, Catherine Z. Chen, Chengyu Liu +3 more

Distinct use of super-enhancer elements controls cell type–specific CD25 transcription and function

Science Immunology(2023)10.1126/sciimmunol.adi8217

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0DataRank · unranked

12 citations

Peng Li, Vivek Chandra, Boyoung Shin, Shubham Goel, Keiko Sakamoto +17 more

Reprogramming of Tumor-reactive Tumor-infiltrating Lymphocytes to Human-induced Pluripotent Stem Cells

Cancer Research Communications(2023)10.1158/2767-9764.crc-22-0265

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0DataRank · unranked

9 citations

Takuya Maeda, Naritaka Tamaoki, Meghan L. Good, Rigel J. Kishton, Biman C. Paria +8 more

Loss of cyclophilin D prolyl isomerase activity desensitizes mitochondrial permeability transition pore opening in isolated cardiac mitochondria, but does not protect in myocardial ischemia-reperfusion injury

Journal of Molecular and Cellular Cardiology(2023)10.1016/j.yjmcc.2023.09.003

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0DataRank · unranked

4 citations

Moises Bustamante, Georgios Amanakis, Junhui Sun, Chengyu Liu, Richard N. Kitsis +2 more

Cell-specific and shared enhancers control a high-density multi-gene locus active in mammary and salivary glands

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.06.527373

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2 citations

Michaela Willi, Chengyu Liu, Lothar Hennighausen, Hye‐Kyung Lee

ADP-ribose-acceptor hydrolase 2 ( Arh2 ) deficiency results in cardiac dysfunction, tumorigenesis, inflammation, and decreased survival

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.07.527494

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0DataRank · unranked

1 citations

Sachiko Yamashita, Hiroko Ishiwata-Endo, Shunya Oka, Zu‐Xi Yu, Chengyu Liu +9 more

A PARP inhibitor, rucaparib, improves cardiac dysfunction in ADP-ribose-acceptor hydrolase 3 ( Arh3 ) deficiency

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.07.527369

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0DataRank · unranked

1 citations

Xiangning Bu, Hiroko Ishiwata-Endo, Jiro Kato, Danielle Springer, Audrey Noguchi +10 more

Mono-ADP-ribosyltransferase 1 ( Artc1 )-deficiency decreases tumorigenesis, increases inflammation, decreases cardiac contractility, and reduces survival

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.06.527366

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0DataRank · unranked

0 citations

Jiro Kato, Hirotake Oda, Junhui Sun, Zu‐Xi Yu, Chengyu Liu +6 more

A cytokine-responsive promoter is required for distal enhancer function mediating the hundreds-fold increase in milk protein gene expression during lactation

Research Square(2023)10.21203/rs.3.rs-2533546/v1

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0 citations

Hye‐Kyung Lee, Chengyu Liu, Lothar Hennighausen

A cytokine-responsive promoter is required for distal enhancer function mediating the hundreds-fold increase in milk protein gene expression during lactation

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.06.527375

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0DataRank · unranked

0 citations

Chengyu Liu, Lothar Hennighausen, Hye‐Kyung Lee

Mouse Homolog of Human IRF8 G388S Mutation Provides Novel Insight into Osteoclastogenesis and Tooth Root Resorption

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.23.537931

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0DataRank · unranked

0 citations

Sathish Kumar Yesupatham, Devon L. Allison, Himanshi Tanwar, JebaMercy Gnanasekaran, Bernice D. Kear +10 more

Acute depletion of BRG1 reveals its primary function as an activator of transcription

Nature Communications(2024)10.1038/s41467-024-48911-z

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0DataRank · unranked

27 citations

Wai Lim Ku, Guangzhe Ge, Jackson A. Hoffman, Jee Youn Kang, Qingsong Tang +8 more

Tyrosine phosphorylation of both STAT5A and STAT5B is necessary for maximal IL-2 signaling and T cell proliferation

Nature Communications(2024)10.1038/s41467-024-50925-6

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0DataRank · unranked

20 citations

Meili Ge, Chengyu Liu, Ronald J. Holewinski, Þorkell Andrésson, Zu‐Xi Yu +5 more

NAD activates olfactory receptor 1386 to regulate type I interferon responses in Plasmodium yoelii YM infection

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2403796121

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0DataRank · unranked

6 citations

Jian Wu, Xiao He, Jin Dai, Lu Xia, Paola Carolina Valenzuela Leon +11 more

Sexually dimorphic renal expression of mouse Klotho is directed by a kidney-specific distal enhancer responsive to HNF1b

Communications Biology(2024)10.1038/s42003-024-06855-6

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2 citations

Hye‐Kyung Lee, Chengyu Liu, Julia Wilflingseder, Lothar Hennighausen, Jakub Jankowski

Monitoring mitochondrial calcium in cardiomyocytes during coverslip hypoxia using a fluorescent lifetime indicator

Journal of Molecular and Cellular Cardiology Plus(2024)10.1016/j.jmccpl.2024.100074

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2 citations

Mikako Harata, Kavisha Silva, Chengyu Liu, Christian A. Combs, Bárbara Román +2 more

Overexpression of enhanced yellow fluorescent protein fused with Channelrhodopsin‐2 causes contractile dysfunction in skeletal muscle

The FASEB Journal(2024)10.1096/fj.202401664rr

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0DataRank · unranked

1 citations

Carol Davis, Peter Macpherson, T. Brad Willingham, Yingfan Zhang, Chengyu Liu +9 more

RGS4 controls airway hyperresponsiveness through GAP-independent mechanisms

Journal of Biological Chemistry(2024)10.1016/j.jbc.2024.107127

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0DataRank · unranked

1 citations

Eunice C. Chan, Justin Lack, Chengyu Liu, Kirk M. Druey, Ilin Joshi

Sexually dimorphic renal expression of Klotho is directed by a kidney-specific distal enhancer responsive to HNF1b

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.29.582831

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2 citations

Hye‐Kyung Lee, Chengyu Liu, Julia Wilflingseder, Lothar Hennighausen, Jakub Jankowski

STAT5B SH2 variants disrupt mammary enhancers and the stability of genetic programs during pregnancy

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.06.592736

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2 citations

Chengyu Liu, Lothar Hennighausen, Hye‐Kyung Lee

Sexually dimorphic renal expression of Klotho is directed by a kidney-specific distal enhancer responsive to HNF1b

Research Square(2024)10.21203/rs.3.rs-4188774/v1

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0DataRank · unranked

1 citations

Hye‐Kyung Lee, Chengyu Liu, Julia Wilflingseder, Lothar Hennighausen, Jakub Jankowski

Corrigendum to “Loss of methionine sulfoxide reductases increases resistance to oxidative stress” [Free Radic. Biol. Med. 145 (2019) 374–384]

Free Radical Biology and Medicine(2024)10.1016/j.freeradbiomed.2024.05.002

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0 citations

Junhui Sun, Sreya Tarafdar, Chengyu Liu, Elizabeth Murphy, Geumsoo Kim +2 more

Generation of induced pluripotent stem cell lines TRNDi037-A and TRNDi038-A from two patients with Alagille syndrome carrying heterozygous JAG1 mutations

Stem Cell Research(2024)10.1016/j.scr.2024.103634

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0DataRank · unranked

0 citations

Guibin Chen, Ivan Pavlinov, Xiuli Huang, Kaari L. Linask, Chengyu Liu +9 more

A CD4+ T cell-intrinsic complement C5aR2-prostacyclin-IL-1R2 axis orchestrates Th1 cell contraction

Immunity(2025)10.1016/j.immuni.2025.05.003

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0DataRank · unranked

10 citations

Jack Bibby, Parul Singh, Nicolas S. Merle, Erin E. West, Andrea C. Bohrer +16 more

In vivo transplantation of mammalian vascular organoids onto the chick chorioallantoic membrane reveals the formation of a hierarchical vascular network

Scientific Reports(2025)10.1038/s41598-025-91826-y

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6 citations

Shravani Vatti, Tyler Sakamoto, Wenling Li, Sarah Rose Odutola, Chengyu Liu +4 more

Serotonergic and Chemosensory Brain Areas and Sensory Ganglia Expressing Type 3 Deiodinase Mapped With Dio3Cre drivers

Endocrinology(2025)10.1210/endocr/bqaf085

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4 citations

Lily Ng, Chengyu Liu, Douglas Forrest, Ye Liu

Optimal CXCR5 expression during Tfh maturation involves the Bhlhe40-Pou2af1 axis

Cell Reports(2025)10.1016/j.celrep.2025.116470

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4 citations

Xi Chen, Yaqiang Cao, Chengyu Liu, Zoey J Kline, Gangqing Hu +13 more

4D physiologically adaptable cardiac patch: A 4-month in vivo study for the treatment of myocardial infarction

Science Advances(2020)10.1126/sciadv.abb5067

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223 citations

Chengyu Liu, Timothy Esworthy, Yimin Huang, Zu‐Xi Yu, Xuan Zhou +8 more

Foxp3 M370I mutation allows the activation of T effector programs in regulatory T cells 3759

The Journal of Immunology(2025)10.1093/jimmun/vkaf283.1524

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0DataRank · unranked

0 citations

Angela M. Thornton, Kole Tison, Sung-Hwan Yoon, Joseph G. Gillen, Hyunwoo Chung +10 more

Remote health diagnosis and monitoring in the time of COVID-19

Physiological Measurement(2020)10.1088/1361-6579/abba0a

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0DataRank · unranked

79 citations

Chengyu Liu, Kevin Kotzen, Kenta Tsutsui, Valentina D A Corino, Janmajay Singh +11 more