Li Shen

Also affiliated with Beijing Academy of Agricultural and Forestry Sciences, Icahn School of Medicine at Mount Sinai

Biochemistry, Genetics and Molecular BiologyNeuroscience

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 4%percentile

0.584Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Long read, isoform aware sequencing of mouse nucleus accumbens after chronic cocaine treatment

Scientific Reports(2021)10.1038/s41598-021-86068-7

Top 34%

0.584DataRank

Top 34%3 citations

Efrain Ribeiro, Nancy Francoeur, Melissa Smith, Robert Sebra, Szu-Ying Yeh +4 more

Papers

Driven by 62 papers — median percentile 66. Top paper: “Circulating myeloid-derived MMP8 in stress susceptibility and depression”.

Circulating myeloid-derived MMP8 in stress susceptibility and depression

Nature(2024)10.1038/s41586-023-07015-2

N/A

4.0DataRank · unranked

163 citations

Hsiao‐Yun Lin, Kenny L. Chan, Long Li, Lyonna F. Parise, Johana Alvarez +25 more

Diversified transcriptional responses of myeloid and glial cells in spinal cord injury shaped by HDAC3 activity

Science Advances(2021)10.1126/sciadv.abd8811

N/A

2.0DataRank · unranked

69 citations

Xianxiao Zhou, Xiang Zhou, Lei Guo, Marie-Sophie Friedl, Michael Kluge +7 more

Dissociation of tau pathology and neuronal hypometabolism within the ATN framework of Alzheimer’s disease

Nature Communications(2022)10.1038/s41467-022-28941-1

N/A

0.937DataRank · unranked

46 citations

Sandhitsu R. Das, Xueying Lyu, Long Xie, Hayley Richardson, Sharon X. Xie +95 more

Correlation between Alzheimer’s disease and type 2 diabetes using non-negative matrix factorization

Scientific Reports(2021)10.1038/s41598-021-94048-0

N/A

0.920DataRank · unranked

32 citations

Hyunju Lee, the Alzheimer’s Disease Neuroimaging Initiative, Michael W. Weiner, Paul Aisen, Ronald Petersen +95 more

TGM2-mediated histone transglutamination is dictated by steric accessibility

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2208672119

N/A

0.865DataRank · unranked

40 citations

Michelle M. Mitchener, Lingchun Kong, Barbara E. Dul, Cole D. Lazarus, Aarthi Ramakrishnan +5 more

Chronic Intermittent Hypoxia Enhances Pathological Tau Seeding, Propagation, and Accumulation and Exacerbates Alzheimer-like Memory and Synaptic Plasticity Deficits and Molecular Signatures

Biological Psychiatry(2021)10.1016/j.biopsych.2021.02.973

N/A

0.631DataRank · unranked

66 citations

Abhijeet Sharma, Sivaprakasam R. Saroja, Joon Ho Seo, Chloe S. Larson, Aarthi Ramakrishnan +10 more

Prenatal Δ9-Tetrahydrocannabinol Exposure in Males Leads to Motivational Disturbances Related to Striatal Epigenetic Dysregulation

Biological Psychiatry(2021)10.1016/j.biopsych.2021.09.017

N/A

0.606DataRank · unranked

56 citations

Anissa Bara, Claudia A. Vargas, Amy L. Frick, Eddie Loh, Joseph A. Landry +10 more

Plexin-B2 orchestrates collective stem cell dynamics via actomyosin contractility, cytoskeletal tension and adhesion

Nature Communications(2021)10.1038/s41467-021-26296-7

N/A

0.596DataRank · unranked

52 citations

Rafael Dariolli, Jonathan C. Haydak, Sangjo Kang, Theodore Hannah, Robert J. Wiener +14 more

Long read, isoform aware sequencing of mouse nucleus accumbens after chronic cocaine treatment

Scientific Reports(2021)10.1038/s41598-021-86068-7

Top 34%

0.584DataRank

Top 34%3 citations

Efrain Ribeiro, Nancy Francoeur, Melissa Smith, Robert Sebra, Szu-Ying Yeh +4 more

Hypoxia drives shared and distinct transcriptomic changes in two invasive glioma stem cell lines

Scientific Reports(2024)10.1038/s41598-024-56102-5

N/A

0.505DataRank · unranked

28 citations

Mary Ughetta, Rut Tejero, Sidhanta Nanda, Rohana Ramalingam, Lauren Stalbow +10 more

Molecular and long-term behavioral consequences of neonatal opioid exposure and withdrawal in mice

Frontiers in Behavioral Neuroscience(2023)10.3389/fnbeh.2023.1202099

N/A

0.500DataRank · unranked

27 citations

Shivon A. Robinson, Chiso Nwokafor, Molly Estill, Julia Ferrante, Li Shen +10 more

The role of the Toll like receptor 4 signaling in sex-specific persistency of depression-like behavior in response to chronic stress

Brain Behavior and Immunity(2023)10.1016/j.bbi.2023.10.006

N/A

0.489DataRank · unranked

25 citations

Tal Frolinger, Umar Iqbal, Molly Estill, Li Shen, Kyle J. Trageser +2 more

Rescue of deficits by Brwd1 copy number restoration in the Ts65Dn mouse model of Down syndrome

Nature Communications(2022)10.1038/s41467-022-34200-0

N/A

0.489DataRank · unranked

25 citations

Wendy Wenderski, Ashley E. Lepack, Andrew L. Eagle, Tomas Fanutza, Ryan M. Bastle +22 more

The transcriptional coactivator Eya1 exerts transcriptional repressive activity by interacting with REST corepressors and REST-binding sequences to maintain nephron progenitor identity

Nucleic Acids Research(2022)10.1093/nar/gkac760

N/A

0.406DataRank · unranked

14 citations

Chunming Cheng, Jin Xu, Ting Zhang, Bengü Tokat, Georgia Dolios +5 more

Histopathologic brain age estimation via multiple instance learning

Acta Neuropathologica(2023)10.1007/s00401-023-02636-3

N/A

0.396DataRank · unranked

13 citations

Justin Kauffman, Andrew McKenzie, Daniel Koenigsberg, Cory T. McMillan, Susan Morgello +13 more

Sex-biased effects on hippocampal circuit development by perinatal SERT expression in CA3 pyramidal neurons

Development(2022)10.1242/dev.200549

N/A

0.345DataRank · unranked

9 citations

Galadu Subah, Jennifer C Chan, Luisa Speranza, Xiaolei Zhang, Aarthi Ramakrishnan +5 more

Evolutionary Khovanov homology

AIMS Mathematics(2024)10.3934/math.20241277

N/A

0.345DataRank · unranked

9 citations

Jian Liu, Guo‐Wei Wei, Li Shen

ChatGPT for computational topology

Foundations of Data Science(2024)10.3934/fods.2024009

N/A

0.312DataRank · unranked

7 citations

Li Shen, Guo‐Wei Wei, Jian Liu

Molecular and cellular similarities in the brain of SARS-CoV-2 and Alzheimer’s disease individuals

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.23.517706

N/A

0.269DataRank · unranked

5 citations

Kyle J. Trageser, Sean X. Naughton, Eun‐Jeong Yang, Brian Mathew, Grace Van Hyfte +7 more

AhR restricts axon regeneration by balancing neuronal stress and growth response after injury

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.04.565649

N/A

0.269DataRank · unranked

5 citations

Yiqun Wang, Jiaxi Li, Daniel Halpérin, Haofei Ni, Molly Estill +7 more

Nucleus accumbens myocyte enhancer factor 2C mediates the maintenance of peripheral nerve injury–induced physiological and behavioral maladaptations

Pain(2024)10.1097/j.pain.0000000000003316

N/A

0.241DataRank · unranked

4 citations

Zahra Farzinpour, Vishwendra Patel, Abigail M. Kelley, Molly Estill, Kerri D. Pryce +10 more

Desipramine induces anti-inflammatory dorsal root ganglion transcriptional signatures in the murine spared nerve injury model

Neurobiology of Pain(2024)10.1016/j.ynpai.2024.100153

N/A

0.104DataRank · unranked

1 citations

Aarthi Ramakrishnan, Li Shen, Venetia Zachariou, Randal A. Serafini

Estimation of reference curves for brain atrophy and analysis of robustness to machine effects

Scientific Reports(2025)10.1038/s41598-025-18073-z

N/A

0.104DataRank · unranked

1 citations

Félix Renard, Arnaud Attyé, Alexandre Krainik, for the Alzheimer’s Disease Neuroimaging Initiative, MICHAEL W. WEINER +95 more

ZBTB7A regulates MDD-specific chromatin signatures and astrocyte-mediated stress vulnerability in orbitofrontal cortex

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.04.539425

N/A

0DataRank · unranked

6 citations

Jaroslav Bendl, Isabel Gameiro‐Ros, John F. Fullard, Amni Al-Kachak, Ashley E. Lepack +21 more

Serotonin transporter-dependent histone serotonylation in placenta contributes to the neurodevelopmental transcriptome

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.14.567020

N/A

0DataRank · unranked

3 citations

Natália Alenina, Ashley M. Cunningham, Aarthi Ramakrishnan, Li Shen, Michael Bäder +2 more

Peripheral immune-derived matrix metalloproteinase promotes stress susceptibility

Research Square(2023)10.21203/rs.3.rs-1647827/v1

N/A

0DataRank · unranked

2 citations

Flurin Cathomas, Hsiao‐Yun Lin, Kenny L. Chan, Long Li, Romain Durand-de Cuttoli +21 more

Histone serotonylation in dorsal raphe nucleus contributes to stress- and antidepressant-mediated gene expression and behavior

Nature Communications(2024)10.1038/s41467-024-49336-4

N/A

0DataRank · unranked

46 citations

G. Salvo, Sasha L. Fulton, Jennifer C Chan, Lorna A. Farrelly, Ashley E. Lepack +15 more

Serotonin Transporter-dependent Histone Serotonylation in Placenta Contributes to the Neurodevelopmental Transcriptome

Journal of Molecular Biology(2024)10.1016/j.jmb.2024.168454

N/A

0DataRank · unranked

30 citations

Natália Alenina, Ashley M. Cunningham, Aarthi Ramakrishnan, Li Shen, Michael Bäder +2 more

Cell type–specific epigenetic priming of gene expression in nucleus accumbens by cocaine

Science Advances(2024)10.1126/sciadv.ado3514

N/A

0DataRank · unranked

20 citations

Yentl Y. van der Zee, Ashik Gurung, Molly Estill, Rita Futamura, Hope Kronman +9 more

Persistent Mayer homology and persistent Mayer Laplacian

Foundations of Data Science(2024)10.3934/fods.2024032

N/A

0DataRank · unranked

15 citations

Jian Liu, Guo‐Wei Wei, Li Shen

DeepRegFinder: deep learning-based regulatory elements finder

Bioinformatics Advances(2024)10.1093/bioadv/vbae007

N/A

0DataRank · unranked

5 citations

George Wangensteen, Sarah Kim, Eric J. Nestler, Li Shen, Aarthi Ramakrishnan

Collaborative Survival Analysis on Predicting Alzheimer’s Disease Progression

Statistics in Biosciences(2024)10.1007/s12561-024-09459-0

N/A

0DataRank · unranked

1 citations

Selena Wang, Li Shen, Yize Zhao, Wanwan Xu

RGS4 Actions in Mouse Prefrontal Cortex Modulate Behavioral and Transcriptomic Responses to Chronic Stress and Ketamine

Molecular Pharmacology(2024)10.1124/molpharm.123.000753

N/A

0DataRank · unranked

3 citations

Anne Ruiz, Claire Polizu, Zahra Farzinpour, Aarthi Ramakrishnan, Randal A. Serafini +10 more

Transcriptional characterization of cocaine withdrawal versus extinction within nucleus accumbens

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.12.584637

N/A

0DataRank · unranked

0 citations

Leanne M. Holt, Angélica Minier-Toribio, Molly Estill, Szu-Ying Yeh, Solange Tofani +6 more

Chromatin accessibility and H3K9me3 landscapes reveal long-term epigenetic effects of fetal-neonatal iron deficiency in rat hippocampus

BMC Genomics(2024)10.1186/s12864-024-10230-4

N/A

0DataRank · unranked

0 citations

Aarthi Ramakrishnan, Li Shen, Jonathan C. Gewirtz, Michael Georgieff, Phu V. Tran +1 more

Persistent Khovanov homology of tangles

arXiv (Cornell University)(2024)10.48550/arxiv.2409.18312

N/A

0DataRank · unranked

0 citations

Li Shen, Guo‐Wei Wei, Jian Liu

Bidirectional histone monoaminylation dynamics regulate neural rhythmicity

Nature(2025)10.1038/s41586-024-08371-3

N/A

0DataRank · unranked

50 citations

Benjamin H. Weekley, David A. Vinson, Shuai Zhao, Ryan M. Bastle, Robert E. Thompson +24 more

Molecular signatures of regional vulnerability to tauopathy in excitatory cortical neurons

Acta Neuropathologica(2025)10.1007/s00401-025-02879-2

N/A

0DataRank · unranked

5 citations

Abhijeet Sharma, Aarthi Ramakrishnan, Anjalika Chongtham, Dorothee M. Günther, Saraswathi Subramaniyan +10 more

Dynamic changes in cis-regulatory occupancy by Six1 and its cooperative interactions with distinct cofactors drive lineage-specific gene expression programs during progressive differentiation of the auditory sensory epithelium

Nucleic Acids Research(2020)10.1093/nar/gkaa012

N/A

0DataRank · unranked

53 citations

Ting Zhang, Aarthi Ramakrishnan, Bernd Fritzsch, Jin Xu, Elaine Y.M. Wong +5 more

Cortical tension as a mechanical barrier to safeguard against premature differentiation during neurogenesis

Research Square(2025)10.21203/rs.3.rs-7725502/v1

N/A

0DataRank · unranked

0 citations

Daniel Halpérin, Chrystian Junqueira Alves, Marcelle Rodrigues Lemos, Soumyadeb Dey, Haochen Tao +14 more

Optimization of probiotic therapeutics using machine learning in an artificial human gastrointestinal tract

Scientific Reports(2021)10.1038/s41598-020-79947-y

N/A

0DataRank · unranked

65 citations

Francesca Carracci, Molly Estill, Danyue Zhao, Qing-Li Wu, Li Shen +3 more

Gene-Targeted, CREB-Mediated Induction of ΔFosB Controls Distinct Downstream Transcriptional Patterns Within D1 and D2 Medium Spiny Neurons

Biological Psychiatry(2021)10.1016/j.biopsych.2021.06.017

N/A

0DataRank · unranked

28 citations

Yentl Y. van der Zee, Molly Estill, Hope Kronman, Marine Salery, Ashley M. Cunningham +8 more

Sex-Specific Role for SLIT1 in Regulating Stress Susceptibility

Biological Psychiatry(2021)10.1016/j.biopsych.2021.01.019

N/A

0DataRank · unranked

26 citations

Casey K. Lardner, Eric M. Parise, Philipp Mews, Aarthi Ramakrishnan, Vishwendra Patel +17 more

Chromatin Remodelers Interact with Eya1 and Six2 to Target Enhancers to Control Nephron Progenitor Cell Maintenance

Journal of the American Society of Nephrology(2021)10.1681/asn.2021040525

N/A

0DataRank · unranked

19 citations

Jin Xu, Huihui Jiang, Ting Zhang, Aarthi Ramakrishnan, Li Shen +2 more

Chromatin profiling in human neurons reveals aberrant roles for histone acetylation and BET family proteins in schizophrenia

Nature Communications(2022)10.1038/s41467-022-29922-0

N/A

0DataRank · unranked

37 citations

Shuangping Zheng, Nadine Schrode, Aaron Topol, Natarajan V. Bhanu, Ryan M. Bastle +12 more

Crystallin Mu in Medial Amygdala Mediates the Effect of Social Experience on Cocaine Seeking in Males but Not in Females

Biological Psychiatry(2022)10.1016/j.biopsych.2022.06.026

N/A

0DataRank · unranked

21 citations

Xianxiao Zhou, Ashley M. Cunningham, Aarthi Ramakrishnan, Hannah M. Cates, Casey K. Lardner +15 more

Machine Learning Analysis of Cocaine Addiction Informed by DAT, SERT, and NET-Based Interactome Networks

Journal of Chemical Theory and Computation(2022)10.1021/acs.jctc.2c00002

N/A

0DataRank · unranked

15 citations

Kaifu Gao, Dong Chen, Li Shen, Alfred J. Robison, Edmund L. Ellsworth +2 more

Transcriptome profiles associated with resilience and susceptibility to single prolonged stress in the locus coeruleus and nucleus accumbens in male sprague-dawley rats

Behavioural Brain Research(2022)10.1016/j.bbr.2022.114162

N/A

0DataRank · unranked

13 citations

Arax Tanelian, Chiso Nwokafor, Arthur Godino, Eric M. Parise, Molly Estill +4 more

Histone monoaminylation dynamics are regulated by a single enzyme and promote neural rhythmicity

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.06.519310

N/A

0DataRank · unranked

18 citations

Ryan M. Bastle, Shuai Zhao, Lingchun Kong, Lauren E. Vostal, Aarthi Ramakrishnan +15 more

Spatial patterning and immunosuppression of glioblastoma immune contexture in hypoxic niches

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.01.482530

N/A

0DataRank · unranked

2 citations

Sangjo Kang, Zhihong Chen, Valerie Marallano, Concetta Brusco, Aarthi Ramakrishnan +5 more

Hypoxic niches attract and sequester tumor-associated macrophages and cytotoxic T cells and reprogram them for immunosuppression

Immunity(2023)10.1016/j.immuni.2023.06.017

N/A

0DataRank · unranked

248 citations

Sangjo Kang, Bruno Giotti, Zhihong Chen, Valerie Marallano, Concetta Brusco +7 more

Comparison of Mammography AI Algorithms with a Clinical Risk Model for 5-year Breast Cancer Risk Prediction: An Observational Study

Radiology(2023)10.1148/radiol.222733

N/A

0DataRank · unranked

91 citations

Laurel A. Habel, Ninah Achacoso, Diana S.M. Buist, Jason B. Cord, Laura J. Esserman +15 more

Convergent abnormalities in striatal gene networks in human cocaine use disorder and mouse cocaine administration models

Science Advances(2023)10.1126/sciadv.add8946

N/A

0DataRank · unranked

62 citations

Ashley M. Cunningham, Joseph R. Scarpa, Aarthi Ramakrishnan, Emily M. Hicks, Sarah Bolnick +5 more

Transcriptional signatures of heroin intake and relapse throughout the brain reward circuitry in male mice

Science Advances(2023)10.1126/sciadv.adg8558

N/A

0DataRank · unranked

46 citations

Rita Futamura, Angélica Minier-Toribio, Emily M. Hicks, Aarthi Ramakrishnan, Freddyson J. Martínez-Rivera +12 more

SVSBI: sequence-based virtual screening of biomolecular interactions

Communications Biology(2023)10.1038/s42003-023-04866-3

N/A

0DataRank · unranked

31 citations

Hongsong Feng, Yuchi Qiu, Guo‐Wei Wei, Li Shen

Circadian clock regulator Bmal1 gates axon regeneration via Tet3 epigenetics in mouse sensory neurons

Nature Communications(2023)10.1038/s41467-023-40816-7

N/A

0DataRank · unranked

17 citations

Yiqun Wang, Aarthi Ramakrishnan, Molly Estill, Xijing He, Li Shen +3 more

Transcriptional control of nucleus accumbens neuronal excitability by retinoid X receptor alpha tunes sensitivity to drug rewards

Neuron(2023)10.1016/j.neuron.2023.02.013

N/A

0DataRank · unranked

32 citations

Marine Salery, Romain Durand-de Cuttoli, Molly Estill, Leanne M. Holt, Rita Futamura +8 more

Oxycodone withdrawal induces HDAC1/HDAC2-dependent transcriptional maladaptations in the reward pathway in a mouse model of peripheral nerve injury

Nature Neuroscience(2023)10.1038/s41593-023-01350-3

N/A

0DataRank · unranked

21 citations

Randal A. Serafini, Aarthi Ramakrishnan, Andrew Nicolais, Ilinca M. Giosan, Claire Polizu +15 more

Recapitulation of pathophysiological features of AD in SARS-CoV-2-infected subjects

eLife(2023)10.7554/elife.86333

N/A

0DataRank · unranked

18 citations

Kyle J. Trageser, Sean X. Naughton, Eun‐Jeong Yang, Brian Mathew, Grace Van Hyfte +7 more

Examination of fully automated mammographic density measures using LIBRA and breast cancer risk in a cohort of 21,000 non-Hispanic white women

Breast Cancer Research(2023)10.1186/s13058-023-01685-6

N/A

0DataRank · unranked

10 citations

Stacey Alexeeff, Ninah Achacoso, Vignesh A. Arasu, Aimilia Gastounioti, Lawrence Gerstley +18 more

Tianeptine promotes lasting antiallodynic effects in a mouse model of neuropathic pain

Neuropsychopharmacology(2023)10.1038/s41386-023-01645-w

N/A

0DataRank · unranked

6 citations

Molly Estill, Elizabeth A. Pekarskaya, Farhana Sakloth, Li Shen, Jonathan A. Javitch +2 more

Monomethylation of Lysine 27 at Histone 3 Confers Lifelong Susceptibility to Stress

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.08.539829

N/A

0DataRank · unranked

11 citations

Molly Estill, Aarthi Ramakrishnan, Hope Kronman, Vishwendra Patel, Angélica Minier-Toribio +13 more

Li Shen

Indexed papers

Top data-sharing exemplar

Papers