Adam Waalkes

MedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 17 papers. Top paper: “Mechanisms of Staphylococcus aureus survival of trimethoprim-sulfamethoxazole-induced thymineless death”.

Mechanisms of Staphylococcus aureus survival of trimethoprim-sulfamethoxazole-induced thymineless death

mBio(2024)10.1128/mbio.01634-24

N/A

0.312DataRank · unranked

5 citations

Allyson Tran, T. B. Gardiner, Tiia Freeman, Angshita Dutta, Carson J. Miller +7 more

Repeated isolation of an antibiotic-dependent and temperature-sensitive mutant ofPseudomonas aeruginosafrom a cystic fibrosis patient

Journal of Antimicrobial Chemotherapy(2020)10.1093/jac/dkaa482

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0DataRank · unranked

6 citations

Alison Scott, Catherine R. Armbruster, Dale Whittington, J. Scott Edgar, Xuan Qin +8 more

Synergy Between Beta-Lactams and Lipo-, Glyco-, and Lipoglycopeptides, Is Independent of the Seesaw Effect in Methicillin-Resistant Staphylococcus aureus

Frontiers in Molecular Biosciences(2021)10.3389/fmolb.2021.688357

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0DataRank · unranked

16 citations

Ismael A Barreras Beltran, Nathaniel K. Ashford, Kelsi Penewit, Adam Waalkes, Elizabeth A. Holmes +5 more

Emergence of Dalbavancin, Vancomycin, and Daptomycin Nonsusceptible Staphylococcus aureus in a Patient Treated With Dalbavancin: Case Report and Isolate Characterization

Clinical Infectious Diseases(2022)10.1093/cid/ciac341

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0DataRank · unranked

35 citations

Hari Polenakovik, Ismael A Barreras Beltran, Adam Waalkes, Stephen J. Salipante, Libin Xu +2 more

Genome Capture Sequencing Selectively Enriches Bacterial DNA and Enables Genome-Wide Measurement of Intrastrain Genetic Diversity in Human Infections

mBio(2022)10.1128/mbio.01424-22

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0DataRank · unranked

15 citations

Snehal Joshi, Matthew C. Radey, Anh T. Vo, Cara M Forsberg, Sarah J. Morgan +7 more

Genomic reconstruction and directed interventions in a multidrug-resistant Shigellosis outbreak in Seattle, WA, USA: a genomic surveillance study

The Lancet Infectious Diseases(2023)10.1016/s1473-3099(22)00879-9

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0DataRank · unranked

36 citations

Dustin R. Long, Adam Waalkes, Lori Bourassa, Stephen J. Libby, Kelsi Penewit +9 more

In Vitro Selection Identifies Staphylococcus aureus Genes Influencing Biofilm Formation

Infection and Immunity(2023)10.1128/iai.00538-22

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0DataRank · unranked

15 citations

Kelsi Penewit, Hsin‐Yu Lo, Jared Almazan, Elizabeth A. Holmes, Andrew Bryan +5 more

Transposon sequencing identifies genes impacting Staphylococcus aureus invasion in a human macrophage model

Infection and Immunity(2023)10.1128/iai.00228-23

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0DataRank · unranked

8 citations

Dustin R. Long, Elizbeth A. Holmes, Kelsi Penewit, Taylor Hodgson, Janessa D. Lewis +3 more

543 Detailed profiling of the intestinal microbiome of children with cystic fibrosis treated with elexacaftor-tezacaftor-ivacaftor

Journal of Cystic Fibrosis(2023)10.1016/s1569-1993(23)01466-2

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0DataRank · unranked

0 citations

Seth A. Reasoner, Adam Waalkes, Kelsi Penewit, J. Stovall, Andrew G. Sokolow +6 more

Contribution of the patient microbiome to surgical site infection and antibiotic prophylaxis failure in spine surgery

Science Translational Medicine(2024)10.1126/scitranslmed.adk8222

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0DataRank · unranked

52 citations

Chloe Bryson‐Cahn, Adam Waalkes, Elizabeth A. Holmes, Kelsi Penewit, Celeste Tavolaro +7 more

Longitudinal profiling of the intestinal microbiome in children with cystic fibrosis treated with elexacaftor-tezacaftor-ivacaftor

mBio(2024)10.1128/mbio.01935-23

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0DataRank · unranked

23 citations

Rachel Bernard, Adam Waalkes, Kelsi Penewit, Janessa D. Lewis, Andrew G. Sokolow +6 more

Clinical and in vitro models identify distinct adaptations enhancing Staphylococcus aureus pathogenesis in human macrophages

PLoS Pathogens(2024)10.1371/journal.ppat.1012394

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0DataRank · unranked

4 citations

Elizabeth A. Holmes, Hsin‐Yu Lo, Kelsi Penewit, Jared Almazan, Taylor Hodgson +7 more

2023 Neer Award for Basic Science: Genetics of Cutibacterium acnes in revision shoulder arthroplasty: a large-scale bacterial whole-genome sequencing study

Journal of Shoulder and Elbow Surgery(2024)10.1016/j.jse.2024.02.039

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0DataRank · unranked

7 citations

Frederick A. Matsen, Anastasia J. Whitson, Adam Waalkes, Jared Almazan, Lori Bourassa +3 more

Simulated exposures of oritavancin in in vitro pharmacodynamic models select for methicillin-resistant Staphylococcus aureus with reduced susceptibility to oritavancin but minimal cross-resistance or seesaw effect with other antimicrobials

Journal of Antimicrobial Chemotherapy(2025)10.1093/jac/dkaf042

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0DataRank · unranked

2 citations

Rutan Zhang, Ismael A Barreras Beltran, Kelsi Penewit, Adam Waalkes, Elizabeth A. Holmes +3 more

Effects of Therapeutic Antibiotic Exposure on the Oropharyngeal and Fecal Microbiota in Infants With Cystic Fibrosis

Pediatric Pulmonology(2025)10.1002/ppul.71024

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0DataRank · unranked

2 citations

Maria T. Nelson, Sydney E. Ross, Adrian J. Verster, Drake C. Bouzek, Alex Eng +9 more

Identification of a novel tedizolid resistance mutation in rpoB of MRSA after in vitro serial passage

Journal of Antimicrobial Chemotherapy(2020)10.1093/jac/dkaa422

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0DataRank · unranked

13 citations

Kelsi Penewit, Adam Waalkes, Libin Xu, Stephen J. Salipante, Abhinav Nath +2 more

SIV/SARS-CoV-2 coinfection in rhesus macaques impacts viral shedding, host immunity, the microbiome, and viral evolution

Frontiers in Immunology(2025)10.3389/fimmu.2025.1587688

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0DataRank · unranked

1 citations

Zohar Kolodner, Adam Waalkes, Kaitlin Sawatzki, Linhui Hao, Dustin R. Long +13 more