Hernán G. García

Also affiliated with Chan Zuckerberg Initiative (United States), University of California, Berkeley

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 44 papers. Top paper: “Live imaging and biophysical modeling support a button-based mechanism of somatic homolog pairing in Drosophila”.

Live imaging and biophysical modeling support a button-based mechanism of somatic homolog pairing in Drosophila

eLife(2021)10.7554/elife.64412

N/A

1.0DataRank · unranked

34 citations

Jack R Bateman, Amir Jahangiri, Armando Reimer, Nicholas C Lammers, Nica Sabouni +6 more

Predictive modeling reveals that higher-order cooperativity drives transcriptional repression in a synthetic developmental enhancer

eLife(2022)10.7554/elife.73395

N/A

0.849DataRank · unranked

24 citations

Kaitlin Rhee, Jonathan Liu, Selene Jeammet, Meghan A. Turner, Stephen Small +2 more

Biological consequences of tightly bent DNA: The other life of a macromolecular celebrity

Biopolymers(2006)10.1002/bip.20627

N/A

0.792DataRank · unranked

196 citations

Paul Grayson, Lin Han, Mandar Inamdar, Jané Kondev, Philip C. Nelson +7 more

DRMY1 promotes robust morphogenesis in Arabidopsis by sustaining the translation of cytokinin-signaling inhibitor proteins

Developmental Cell(2024)10.1016/j.devcel.2024.08.010

N/A

0.538DataRank · unranked

18 citations

Mingyuan Zhu, M. Regina Scarpin, David Z. Pan, Longfei Jia, Ryan E Martinez +7 more

Flexibility and sensitivity in gene regulation out of equilibrium

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2411395121

N/A

0.477DataRank · unranked

23 citations

Gabriel L. Salmon, Patill Daghlian, Hernán G. García, Rob Phillips, Sara D. Mahdavi

Unified bursting strategies in ectopic and endogenous even-skipped expression patterns

eLife(2023)10.7554/elife.88671

N/A

0.362DataRank · unranked

6 citations

Nicholas C Lammers, Hernán G. García, Michael B. Eisen, Augusto Berrocal

DRMY1 promotes robust morphogenesis by sustaining the translation of cytokinin signaling inhibitor proteins

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.07.536060

N/A

0.241DataRank · unranked

4 citations

Mingyuan Zhu, M. Regina Scarpin, David Z. Pan, Longfei Jia, Ryan E Martinez +7 more

Quantitative dissection of transcription in development yields evidence for transcription factor-driven chromatin accessibility

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.27.922054

N/A

0DataRank · unranked

7 citations

Jonathan Liu, Maryam Kazemzadeh-Atoufi, Sydney Ghoreishi, Shelby A. Blythe, Hernán G. García +1 more

Live imaging and biophysical modeling support a button-based mechanism of somatic homolog pairing in Drosophila

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.30.265108

N/A

0DataRank · unranked

3 citations

Jack R Bateman, Amir Jahangiri, Armando Reimer, Nicholas C Lammers, Nica Sabouni +6 more

Genetically-encoded fluorescent biosensor for rapid detection of protein expression

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.30.229633

N/A

0DataRank · unranked

1 citations

Antonia T. Pandelieva, Marc M. Mayer, Safwat T. Khan, Hernán G. García, Roberto A. Chica +1 more

Fundamental limits on the rate of bacterial growth and their influence on proteomic composition

Cell Systems(2021)10.1016/j.cels.2021.06.002

N/A

0DataRank · unranked

121 citations

Griffin Chure, Christina L. Hueschen, Hernán G. García, Jané Kondev, Daniel S. Fisher +3 more

Real-time single-cell characterization of the eukaryotic transcription cycle reveals correlations between RNA initiation, elongation, and cleavage

PLoS Computational Biology(2021)10.1371/journal.pcbi.1008999

N/A

0DataRank · unranked

33 citations

Donald Hansen, Elizabeth Eck, Yang Joon Kim, Meghan A. Turner, Simón Álamos +2 more

Chromatin changes in PIF-regulated genes parallel their rapid transcriptional response to light

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.04.463089

N/A

0DataRank · unranked

0 citations

Simón Álamos, Yu Zhang, Jutta Dalton‐Roesler, Krishna Niyogi, Hernán G. García +2 more

Chromatin Changes in Phytochrome Interacting Factor-Regulated Genes Parallel Their Rapid Transcriptional Response to Light

Frontiers in Plant Science(2022)10.3389/fpls.2022.803441

N/A

0DataRank · unranked

16 citations

Simón Álamos, Yu Zhang, Jutta Dalton‐Roesler, Krishna Niyogi, Hernán G. García +2 more

Optogenetic dissection of transcriptional repression in a multicellular organism

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.20.517211

N/A

0DataRank · unranked

8 citations

Nicholas C Lammers, Simón Álamos, Yang Joon Kim, Gabriella Martini, Hernán G. García +1 more

Decoding of YAP levels and dynamics by pluripotency factors

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.17.512504

N/A

0DataRank · unranked

4 citations

Nicholas C Lammers, Lukasz J. Bugaj, Hernán G. García, Orion D. Weiner, Kirstin Meyer

Competing constraints shape the non-equilibrium limits of cellular decision making

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.01.498451

N/A

0DataRank · unranked

0 citations

Avi I. Flamholz, Hernán G. García, Nicholas C Lammers

A bistable autoregulatory module in the developing embryo commits cells to binary fates

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.31.514335

N/A

0DataRank · unranked

0 citations

Melinda Liu Perkins, Matthew Norstad, Hernán G. García, Jiaxi Zhao

Minimal synthetic enhancers reveal control of the probability of transcriptional engagement and its timing by a morphogen gradient

Cell Systems(2023)10.1016/j.cels.2022.12.008

N/A

0DataRank · unranked

21 citations

Armando Reimer, Clay Westrum, Meghan A. Turner, Paul Talledo, Jiaxi Zhao +3 more

Competing constraints shape the nonequilibrium limits of cellular decision-making

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2211203120

N/A

0DataRank · unranked

21 citations

Avi I. Flamholz, Hernán G. García, Nicholas C Lammers

Optogenetic control of YAP reveals a dynamic communication code for stem cell fate and proliferation

Nature Communications(2023)10.1038/s41467-023-42643-2

N/A

0DataRank · unranked

20 citations

Nicholas C Lammers, Lukasz J. Bugaj, Hernán G. García, Orion D. Weiner, Kirstin Meyer

A bistable autoregulatory module in the developing embryo commits cells to binary expression fates

Current Biology(2023)10.1016/j.cub.2023.06.060

N/A

0DataRank · unranked

18 citations

Mindy Liu Perkins, Matthew Norstad, Hernán G. García, Jiaxi Zhao

Flexibility and sensitivity in gene regulation out of equilibrium

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.11.536490

N/A

0DataRank · unranked

11 citations

Gabriel L. Salmon, Patill Daghlian, Hernán G. García, Rob Phillips, S. Sara Mahdavi

Unified bursting strategies in ectopic and endogenous even-skipped expression patterns

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.09.527927

N/A

0DataRank · unranked

2 citations

Nicholas C Lammers, Hernán G. García, Michael B. Eisen, Augusto Berrocal

Author Response: Unified bursting strategies in ectopic and endogenous even-skipped expression patterns

(2023)10.7554/elife.88671.1.sa4

N/A

0DataRank · unranked

0 citations

Nicholas C Lammers, Hernán G. García, Michael B. Eisen, Augusto Berrocal

Optogenetic dissection of transcriptional repression in a multicellular organism

Nature Communications(2024)10.1038/s41467-024-53539-0

N/A

0DataRank · unranked

11 citations

Nicholas C Lammers, Simón Álamos, Yang Joon Kim, Gabriella Martini, Hernán G. García +1 more

Energy Aware Technology Mapping of Genetic Logic Circuits

ACS Synthetic Biology(2024)10.1021/acssynbio.4c00395

N/A

0DataRank · unranked

2 citations

Maximilian Gehri, Jérémie J. M. Marlhens, Tobias Schwarz, Maik Molderings, Nicolai Engelmann +4 more

Single-cell transcriptional dynamics in a living vertebrate

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.03.574108

N/A

0DataRank · unranked

16 citations

Bruno Moretti, Brandon H. Schlomann, Jordão Bragantini, Merlin Lange, Xiang Zhao +10 more

Deciphering regulatory architectures from synthetic single-cell expression patterns

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.28.577658

N/A

0DataRank · unranked

3 citations

Tom Röschinger, Kian Faizi, Hernán G. García, Rob Phillips, Rosalind Wenshan Pan

Predictive Modeling of Gene Expression and Localization of DNA Binding Site Using Deep Convolutional Neural Networks

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.17.629042

N/A

0DataRank · unranked

1 citations

Tom Röschinger, Hernán G. García, Arman Karshenas

Energy Aware Technology Mapping of Genetic Logic Circuits

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.06.27.601038

N/A

0DataRank · unranked

0 citations

Maximilian Gehri, Jérémie J. M. Marlhens, Tobias Schwarz, Maik Molderings, Nicolai Engelmann +4 more

Cell fate ratios are encoded by transcriptional dynamics in the Drosophila retina

Current Biology(2025)10.1016/j.cub.2025.05.037

N/A

0DataRank · unranked

4 citations

Yunchong Zhao, Ke Gao, Nicholas M Gravina, Zachary H Goldberg, CR Pinkerton +5 more

Biological processes as exploratory dynamics

Biophysical Journal(2025)10.1016/j.bpj.2025.09.009

N/A

0DataRank · unranked

2 citations

Marc W. Kirschner, Hernán G. García, Gabriel L. Salmon, Rob Phillips, Jané Kondev

Enhancer binding kinetics explain transcription factor hub formation

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.07.647578

N/A

0DataRank · unranked

7 citations

Manya Kapoor, Lillian Encarnation, Apratim Mukherjee, Meghan A. Turner, Hernán G. García +2 more

Global maps of transcription factor properties reveal threshold-based formation of DNA-bound and mobile clusters

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.24.650477

N/A

0DataRank · unranked

1 citations

Meghan A. Turner, Hernán G. García, Gregory T. Reeves, Sadia Siddika Dima

Biological Processes as Exploratory Dynamics

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.06.657857

N/A

0DataRank · unranked

0 citations

Marc W. Kirschner, Hernán G. García, Gabriel L. Salmon, Rob Phillips, Jané Kondev

Biological Processes as Exploratory Dynamics

arXiv (Cornell University)(2025)10.48550/arxiv.2506.04104

N/A

0DataRank · unranked

0 citations

Marc W. Kirschner, Hernán G. García, Gabriel L. Salmon, Rob Phillips, Jané Kondev

A model of transcriptional bursting dynamics based on coupling between chromatin and enhancer states

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.29.691276

N/A

0DataRank · unranked

0 citations

Udi Binshtok, Brian Gebelein, Hernán G. García, David Sprinzak, Ofri Axelrod

A matter of time: Using dynamics and theory to uncover mechanisms of transcriptional bursting

Current Opinion in Cell Biology(2020)10.1016/j.ceb.2020.08.001

N/A

0DataRank · unranked

109 citations

Yang Joon Kim, Jiaxi Zhao, Hernán G. García, Nicholas C Lammers

Kinetic sculpting of the seven stripes of the Drosophila even-skipped gene

eLife(2020)10.7554/elife.61635

N/A

0DataRank · unranked

68 citations

Nicholas C Lammers, Hernán G. García, Michael B. Eisen, Augusto Berrocal

Quantitative dissection of transcription in development yields evidence for transcription-factor-driven chromatin accessibility

eLife(2020)10.7554/elife.56429

N/A

0DataRank · unranked

58 citations

Jonathan Liu, Maryam Kazemzadeh-Atoufi, Sydney Ghoreishi, Shelby A. Blythe, Hernán G. García +1 more

Fundamental limits on the rate of bacterial growth

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.18.344382

N/A

0DataRank · unranked

11 citations

Griffin Chure, Christina L. Hueschen, Hernán G. García, Jané Kondev, Daniel S. Fisher +3 more

Real-time single-cell characterization of the eukaryotic transcription cycle reveals correlations between RNA initiation, elongation, and cleavage

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.29.273474

N/A

0DataRank · unranked

10 citations

Donald Hansen, Elizabeth Eck, Yang Joon Kim, Meghan A. Turner, Simón Álamos +2 more

Quantitative imaging of RNA polymerase II activity in plants reveals the single-cell basis of tissue-wide transcriptional dynamics

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.30.274621

N/A

0DataRank · unranked

9 citations

Armando Reimer, Krishna Niyogi, Hernán G. García, Simón Álamos