🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Fostering Data Sharing

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Thomas O. McDonald

Thomas O. McDonald

Harvard University

ORCID: 0000-0002-5272-0187

Also affiliated with Dana-Farber Cancer Institute

MedicineBiochemistry, Genetics and Molecular BiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 9 papers. Top paper: “Identification of optimal dosing schedules of dacomitinib and osimertinib for a phase I/II trial in advanced EGFR-mutant non-small cell lung cancer”.

Identification of optimal dosing schedules of dacomitinib and osimertinib for a phase I/II trial in advanced EGFR-mutant non-small cell lung cancer

Nature Communications(2021)10.1038/s41467-021-23912-4

N/A

1.1DataRank · unranked

34 citations

Adam J. Schoenfeld, Alex Makhnin, Yosef Y. Tobi, Yuli Wang, Heidie Frisco Cabanos +10 more

Imaging dynamic mTORC1 pathway activity in vivo reveals marked shifts that support time-specific inhibitor therapy in AML

Nature Communications(2021)10.1038/s41467-020-20491-8

N/A

0DataRank · unranked

38 citations

François Mercier, Hiroki Kato, Yookyung Jung, Thomas O. McDonald, Joel A. Spencer +7 more

Single-cell genetic heterogeneity linked to immune infiltration in glioblastoma

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.20.461080

N/A

0DataRank · unranked

1 citations

Dalit Engelhardt, Shreya Yadav, Ugoma Onubogu, Roberto Salatino, Cristina Vincentelli +4 more

evosim : fast and scalable stochastic simulations of evolutionary dynamics

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.28.509950

N/A

0DataRank · unranked

0 citations

Thomas O. McDonald, Dalit Engelhardt

Single-cell heterogeneity of EGFR and CDK4 co-amplification is linked to immune infiltration in glioblastoma

Cell Reports(2023)10.1016/j.celrep.2023.112235

N/A

0DataRank · unranked

25 citations

Dalit Engelhardt, Simona Cristea, Shreya Yadav, Ugoma Onubogu, Roberto Salatino +8 more

Mathematical Modeling Identifies Optimum Palbociclib-fulvestrant Dose Administration Schedules for the Treatment of Patients with Estrogen Receptor–positive Breast Cancer

Cancer Research Communications(2023)10.1158/2767-9764.crc-23-0257

N/A

0DataRank · unranked

11 citations

Shayna Stein, Agostina Nardone, Weihan Liu, Wen Ma, Gabriella Cohen +5 more

BESTDR: Bayesian quantification of mechanism-specific drug response in cell culture

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.02.05.636681

N/A

0DataRank · unranked

0 citations

Simone Bruno, James P. Roney, Ioannis K. Zervantonakis, Franziska Michor, Thomas O. McDonald

ESTIpop: a computational tool to simulate and estimate parameters for continuous-time Markov branching processes

Bioinformatics(2020)10.1093/bioinformatics/btaa526

N/A

0DataRank · unranked

11 citations

Jeremy Ferlic, Franziska Michor, Thomas O. McDonald, James P. Roney

BESTDR Enables Bayesian Quantification of Mechanism-Specific Drug Responses

Cancer Research(2025)10.1158/0008-5472.can-25-1181

N/A

0DataRank · unranked

0 citations

Simone Bruno, James P. Roney, Ioannis K. Zervantonakis, Franziska Michor, Thomas O. McDonald