Genki Terashi

Materials ScienceBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

10.2Author DataRank

Indexed papers

9in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 9 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment

Proteins Structure Function and Bioinformatics(2021)10.1002/prot.26222

Top 9%

2.3DataRank

Top 9%127 citations

Guillaume Brysbaert, Théo Mauri, Nurul Nadzirin, Sameer Velankar, Raphaël A. G. Chaleil +95 more

Papers

Driven by 48 papers — median percentile 76. Top paper: “Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment”.

Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment

Proteins Structure Function and Bioinformatics(2021)10.1002/prot.26222

Top 9%

2.3DataRank

Top 9%127 citations

Guillaume Brysbaert, Théo Mauri, Nurul Nadzirin, Sameer Velankar, Raphaël A. G. Chaleil +95 more

Real-time structure search and structure classification for AlphaFold protein models

Communications Biology(2022)10.1038/s42003-022-03261-8

Top 11%

2.0DataRank

Top 11%63 citations

Vijay Bharadwaj, Charles Christoffer, Genki Terashi, Zicong Zhang, Rashidedin Jahandideh +3 more

Impact of AlphaFold on structure prediction of protein complexes: The CASP15‐CAPRI experiment

Proteins Structure Function and Bioinformatics(2023)10.1002/prot.26609

Top 11%

1.9DataRank

Top 11%81 citations

Guillaume Brysbaert, Nessim Raouraoua, Paul A. Bates, Marco Giulini, Rodrigo V. Honorato +95 more

Outcomes of the EMDataResource cryo-EM Ligand Modeling Challenge

Nature Methods(2024)10.1038/s41592-024-02321-7

Top 23%

0.871DataRank

Top 23%18 citations

Andriy Kryshtafovych, Grigore Pintilie, S.K. Burley, Jiri Cerny, Vincent B. Chen +76 more

VESPER: global and local cryo-EM map alignment using local density vectors

Nature Communications(2021)10.1038/s41467-021-22401-y

Top 24%

0.850DataRank

Top 24%31 citations

Genki Terashi, Charles Christoffer, Siyang Chen, Daisuke Kihara, Xusi Han

Discriminating physiological from non‐physiological interfaces in structures of protein complexes: A community‐wide study

PROTEOMICS(2023)10.1002/pmic.202200323

Top 25%

0.815DataRank

Top 25%26 citations

Qifang Xu, Gerardo Tauriello, Lorenzo Pantolini, Torsten Schwede, Frédéric Cazals +41 more

CryoFold: Determining protein structures and data-guided ensembles from cryo-EM density maps

Matter(2021)10.1016/j.matt.2021.09.004

N/A

0.593DataRank · unranked

51 citations

Genki Terashi, Chitrak Gupta, Daipayan Sarkar, Gaspard Debussche, Nicholas J. Sisco +11 more

Detecting protein and DNA/RNA structures in cryo-EM maps of intermediate resolution using deep learning

Nature Communications(2021)10.1038/s41467-021-22577-3

N/A

0.581DataRank · unranked

47 citations

Eman Alnabati, Tunde Aderinwale, Sai Raghavendra Maddhuri Venkata Subramaniya, Genki Terashi, Daisuke Kihara +1 more

DAQ-Score Database: assessment of map–model compatibility for protein structure models from cryo-EM maps

Nature Methods(2023)10.1038/s41592-023-01876-1

Top 36%

0.544DataRank

Top 36%18 citations

Xiao Wang, Genki Terashi, Daisuke Kihara, Tsukasa Nakamura

DiffModeler: Large Macromolecular Structure Modeling in Low-Resolution Cryo-EM Maps Using Diffusion Model

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.20.576370

N/A

0.543DataRank · unranked

9 citations

Zhu Han, Genki Terashi, Manav Taluja, Daisuke Kihara, Xiao Wang

Impact of AlphaFold on Structure Prediction of Protein Complexes: The CASP15-CAPRI Experiment

Utrecht University Repository (Utrecht University)(2023)10.22541/au.168888815.53957253/v1

Top 36%

0.540DataRank

Top 36%17 citations

Guillaume Brysbaert, Nessim Raouraoua, Paul A. Bates, Marco Giulini, Rodrigo V. Honorato +95 more

Analyzing effect of quadruple multiple sequence alignments on deep learning based protein inter-residue distance prediction

Scientific Reports(2021)10.1038/s41598-021-87204-z

N/A

0.500DataRank · unranked

27 citations

Genki Terashi, Yuki Kagaya, Sai Raghavendra Maddhuri Venkata Subramaniya, Charles Christoffer, Daisuke Kihara +1 more

Protein contact map refinement for improving structure prediction using generative adversarial networks

Bioinformatics(2021)10.1093/bioinformatics/btab220

N/A

0.396DataRank · unranked

13 citations

Genki Terashi, Aashish Jain, Yuki Kagaya, Daisuke Kihara, Sai Raghavendra Maddhuri Venkata Subramaniya

Integrated Protocol of Protein Structure Modeling for Cryo-EM with Deep Learning and Structure Prediction

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.19.563151

N/A

0.387DataRank · unranked

4 citations

Xiao Wang, Devashish Prasad, Tsukasa Nakamura, Zhu Han, Daisuke Kihara +1 more

Outcomes of the 2019 EMDataResource model challenge: validation of cryo-EM models at near-atomic resolution

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.12.147033

Top 48%

0.375DataRank

Top 48%7 citations

Andriy Kryshtafovych, Paul D. Adams, Pavel V. Afonine, Matthew L. Baker, Benjamin A. Barad +49 more

Real-Time Structure Search and Structure Classification for AlphaFold Protein Models

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.21.465371

N/A

0.360DataRank · unranked

10 citations

Vijay Bharadwaj, Charles Christoffer, Genki Terashi, Zicong Zhang, Rashidedin Jahandideh +3 more

MarkovFit: Structure Fitting for Protein Complexes in Electron Microscopy Maps Using Markov Random Field

Frontiers in Molecular Biosciences(2022)10.3389/fmolb.2022.935411

N/A

0.330DataRank · unranked

8 citations

Juan Esquivel‐Rodríguez, Genki Terashi, Daisuke Kihara, Eman Alnabati

AI-based quality assessment methods for protein structure models from cryo-EM

Current Research in Structural Biology(2025)10.1016/j.crstbi.2025.100164

N/A

0.292DataRank · unranked

6 citations

Genki Terashi, Farhanaz Farheen, Tsukasa Nakamura, Daisuke Kihara, Zhu Han

Super-Resolution Cryo-EM Maps With 3D Deep Generative Networks

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.12.426430

N/A

0.269DataRank · unranked

5 citations

Genki Terashi, Daisuke Kihara, Sai Raghavendra Maddhuri Venkata Subramaniya

Distance-AF improves predicted protein structure models by AlphaFold2 with user-specified distance constraints

Communications Biology(2025)10.1038/s42003-025-08783-5

N/A

0.269DataRank · unranked

5 citations

Zicong Zhang, Yuki Kagaya, Genki Terashi, Bowen Zhao, Yi Xiong +2 more

AttentiveDist: Protein Inter-Residue Distance Prediction Using Deep Learning with Attention on Quadruple Multiple Sequence Alignments

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.24.396770

N/A

0.241DataRank · unranked

4 citations

Genki Terashi, Yuki Kagaya, Sai Raghavendra Maddhuri Venkata Subramaniya, Charles Christoffer, Daisuke Kihara +1 more

Integrative Protein Assembly With LZerD and Deep Learning in CAPRI 47–55

Proteins Structure Function and Bioinformatics(2025)10.1002/prot.26818

N/A

0.208DataRank · unranked

3 citations

Yuki Kagaya, Jacob Verburgt, Genki Terashi, Woong‐Hee Shin, Anika Jain +8 more

Protein Model Refinement for Cryo-EM Maps Using DAQ score

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.23.505034

N/A

0.104DataRank · unranked

1 citations

Xiao Wang, Daisuke Kihara, Genki Terashi

Blind prediction of complex water and ion ensembles around RNA in CASP16

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.03.685595

N/A

0DataRank · unranked

0 citations

Elisa Posani, Eugene F. Baulin, Janusz M. Bujnicki, Giovanni Bussi, Thomas E. Cheatham +46 more

Protein Contact Map Denoising Using Generative Adversarial Networks

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.26.174300

N/A

0DataRank · unranked

9 citations

Genki Terashi, Aashish Jain, Yuki Kagaya, Daisuke Kihara, Sai Raghavendra Maddhuri Venkata Subramaniya

Structure of bacteriophage P1 head provides insight into capsid polymorphism

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.26.689930

N/A

0DataRank · unranked

0 citations

Tsukasa Nakamura, Genki Terashi, Veer S. Bhatt, Kyung-Ho Kim, Shankararaman Chellam +3 more

Emap2sec+: Detecting Protein and DNA/RNA Structures in Cryo-EM Maps of Intermediate Resolution Using Deep Learning

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.22.262675

N/A

0DataRank · unranked

2 citations

Eman Alnabati, Tunde Aderinwale, Sai Raghavendra Maddhuri Venkata Subramaniya, Genki Terashi, Daisuke Kihara +1 more

Genotype & Phenotype in Lowe Syndrome: Specific OCRL1 patient mutations differentially impact cellular phenotypes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.04.236612

N/A

0DataRank · unranked

0 citations

Lisette Skiba, Jennifer Lee, Kayalvizhi Madhivanan, Daipayan Sarkar, Agustina De La Fuente +6 more

Community-Wide Assessment of Protein-Interface Modeling Suggests Improvements to Design Methodology

UNC Libraries(2020)10.17615/35z7-9284

N/A

0DataRank · unranked

0 citations

Thom Vreven, Şefik Kerem Ovalı, Jacob E. Corn, Eva‐Maria Strauch, Julie C. Mitchell +27 more

Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge

Nature Methods(2021)10.1038/s41592-020-01051-w

N/A

0DataRank · unranked

119 citations

Andriy Kryshtafovych, Paul D. Adams, Pavel V. Afonine, Matthew L. Baker, Benjamin A. Barad +49 more

Genotype & phenotype in Lowe Syndrome: specific OCRL1 patient mutations differentially impact cellular phenotypes

Human Molecular Genetics(2021)10.1093/hmg/ddab025

N/A

0DataRank · unranked

18 citations

Lisette Skiba, Jennifer Lee, Kayalvizhi Madhivanan, Daipayan Sarkar, Agustina De La Fuente +6 more

Efficient Flexible Fitting Refinement with Automatic Error Fixing for De Novo Structure Modeling from Cryo-EM Density Maps

Journal of Chemical Information and Modeling(2021)10.1021/acs.jcim.1c00230

N/A

0DataRank · unranked

17 citations

Genki Terashi, Daisuke Matsuoka, Daisuke Kihara, Yuji Sugita, Takaharu Mori

Surface-based protein domains retrieval methods from a SHREC2021 challenge

Journal of Molecular Graphics and Modelling(2021)10.1016/j.jmgm.2021.108103

N/A

0DataRank · unranked

3 citations

Tunde Aderinwale, Charles Christoffer, Woong‐Hee Shin, Genki Terashi, Xiao Wang +19 more

SHREC 2021: Surface-based Protein Domains Retrieval

Zenodo (CERN European Organization for Nuclear Research)(2021)10.2312/3dor.20211308

N/A

0DataRank · unranked

1 citations

Tunde Aderinwale, Charles Christoffer, Woong‐Hee Shin, Genki Terashi, Xiao Wang +19 more

Residue-wise local quality estimation for protein models from cryo-EM maps

Nature Methods(2022)10.1038/s41592-022-01574-4

N/A

0DataRank · unranked

60 citations

Xiao Wang, Sai Raghavendra Maddhuri Venkata Subramaniya, J.J.G. Tesmer, Daisuke Kihara, Genki Terashi

Protein model refinement for cryo-EM maps using AlphaFold2 and the DAQ score

Acta Crystallographica Section D Structural Biology(2022)10.1107/s2059798322011676

N/A

0DataRank · unranked

18 citations

Xiao Wang, Daisuke Kihara, Genki Terashi

Protein Structural Modeling for Electron Microscopy Maps Using VESPER and MAINMAST

Current Protocols(2022)10.1002/cpz1.494

N/A

0DataRank · unranked

11 citations

Genki Terashi, Daisuke Kihara, Eman Alnabati

CryoREAD: de novo structure modeling for nucleic acids in cryo-EM maps using deep learning

Nature Methods(2023)10.1038/s41592-023-02032-5

N/A

0DataRank · unranked

49 citations

Genki Terashi, Daisuke Kihara, Xiao Wang

Enhancing cryo-EM maps with 3D deep generative networks for assisting protein structure modeling

Bioinformatics(2023)10.1093/bioinformatics/btad494

N/A

0DataRank · unranked

18 citations

Genki Terashi, Daisuke Kihara, Sai Raghavendra Maddhuri Venkata Subramaniya

Distance-AF: Modifying Predicted Protein Structure Models by Alphafold2 with User-Specified Distance Constraints

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.01.569498

N/A

0DataRank · unranked

13 citations

Zicong Zhang, Yuki Kagaya, Genki Terashi, Bowen Zhao, Yi Xiong +2 more

Unveiling the stochastic nature of human heteropolymer ferritin self‐assembly mechanism

Protein Science(2024)10.1002/pro.5104

N/A

0DataRank · unranked

20 citations

Jeremie Fish, Genki Terashi, Yuanyuan Zhang, Daisuke Kihara, Paolo Arosio +1 more

Outcomes of the EMDataResource Cryo-EM Ligand Modeling Challenge

Research Square(2024)10.21203/rs.3.rs-3864137/v1

N/A

0DataRank · unranked

2 citations

Andriy Kryshtafovych, Grigore Pintilie, S.K. Burley, Jiri Cerny, Vincent Chen +76 more

Effect of phosphorylation barcodes on arrestin binding to a chemokine receptor

Nature(2025)10.1038/s41586-025-09024-9

N/A

0DataRank · unranked

28 citations

Christopher T. Schafer, Somnath Mukherjee, Kai Wang, Martin Gustavsson, James R. Fuller +11 more

AI-based methods for biomolecular structure modeling for Cryo-EM

Current Opinion in Structural Biology(2025)10.1016/j.sbi.2025.102989

N/A

0DataRank · unranked

17 citations

Genki Terashi, Han Zhu, Daisuke Kihara, Farhanaz Farheen

Advancing structure modeling from cryo-EM maps with deep learning

Biochemical Society Transactions(2025)10.1042/bst20240784

N/A

0DataRank · unranked

10 citations

Genki Terashi, Zicong Zhang, Daisuke Kihara, Shu Li

Structure Modeling Protocols for Protein Multimer and RNA in CASP16 With Enhanced MSAs , Model Ranking, and Deep Learning

Proteins Structure Function and Bioinformatics(2025)10.1002/prot.70033

N/A

0DataRank · unranked

6 citations

Tsukasa Nakamura, Jacob Verburgt, Anika Jain, Genki Terashi, Pranav Punuru +6 more

Blind Prediction of Complex Water and Ion Ensembles Around RNA in CASP16

Proteins Structure Function and Bioinformatics(2025)10.1002/prot.70079

N/A

0DataRank · unranked

1 citations

Elisa Posani, Eugene F. Baulin, Janusz M. Bujnicki, Giovanni Bussi, Thomas E. Cheatham +46 more

Structure Modeling Protocols for Protein Multimer and RNA in CASP16 with Enhanced MSAs, Model Ranking, and Deep Learning

(2025)10.22541/au.174478900.09405488/v1

N/A

0DataRank · unranked

0 citations

Tsukasa Nakamura, Jacob Verburgt, Anika Jain J, Genki Terashi, Pranav Punuru +6 more

Genki Terashi

Indexed papers

Top data-sharing exemplar

Papers