Li Shen

Also affiliated with Fudan University, California University of Pennsylvania, Jingdong (China), Qinghai New Energy (China), Zhongshan Hospital, Penn Center for AIDS Research, Shanghai East Hospital, The First Affiliated Hospital, Sun Yat-sen University, YangPu Geriatric Hospital, Louisiana State University Health Sciences Center New Orleans, University of Pennsylvania, Philadelphia University

Biochemistry, Genetics and Molecular BiologyMedicineNeuroscience

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile

1.9Author DataRank

Indexed papers

5in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 5 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Multiomics analysis to explore blood metabolite biomarkers in an Alzheimer’s Disease Neuroimaging Initiative cohort

Scientific Reports(2024)10.1038/s41598-024-56837-1

Top 23%

0.874DataRank

Top 23%27 citations

Yuki Matsuzawa, Momoka Tsuneyoshi, Yoshitaka Nakamura, Ken Aoshima, Hiroshi Tsugawa +91 more

Papers

Driven by 124 papers — median percentile 56. Top paper: “Longitudinal Associations of Blood Phosphorylated Tau181 and Neurofilament Light Chain With Neurodegeneration in Alzheimer Disease”.

Longitudinal Associations of Blood Phosphorylated Tau181 and Neurofilament Light Chain With Neurodegeneration in Alzheimer Disease

JAMA Neurology(2021)10.1001/jamaneurol.2020.4986

N/A

7.4DataRank · unranked

328 citations

Michel J. Grothe, Nicholas J. Ashton, Thomas K. Karikari, Juan Lantero‐Rodriguez, Anniina Snellman +79 more

Characterizing Heterogeneity in Neuroimaging, Cognition, Clinical Symptoms, and Genetics Among Patients With Late-Life Depression

JAMA Psychiatry(2022)10.1001/jamapsychiatry.2022.0020

N/A

2.5DataRank · unranked

148 citations

Cynthia H.Y. Fu, Duygu Tosun, Yogasudha Veturi, Zhijian Yang, Ahmed Abdulkadir +93 more

Amyloid-associated increases in soluble tau relate to tau aggregation rates and cognitive decline in early Alzheimer’s disease

Nature Communications(2022)10.1038/s41467-022-34129-4

N/A

2.4DataRank · unranked

132 citations

Nicolai Franzmeier, Nicola Spotorno, Michael Ewers, Matthias Brendel, Davina Biel +93 more

KL-VS heterozygosity is associated with lower amyloid-dependent tau accumulation and memory impairment in Alzheimer’s disease

Nature Communications(2021)10.1038/s41467-021-23755-z

N/A

1.5DataRank · unranked

67 citations

Nicolai Franzmeier, Anna Rubinski, Martin Dichgans, Matthias Brendel, Alzheimer’s Disease Neuroimaging Initiative (ADNI) +94 more

Deep learning-based polygenic risk analysis for Alzheimer’s disease prediction

Communications Medicine(2023)10.1038/s43856-023-00269-x

N/A

1.5DataRank · unranked

70 citations

Yu Chen, Fanny C.F. Ip, Yuanbing Jiang, Han Cao, Ge Lv +95 more

Squeeze-and-Excitation Networks

IEEE Transactions on Pattern Analysis and Machine Intelligence(2020)10.1109/tpami.2019.2913372

N/A

1.4DataRank · unranked

12393 citations

Li Shen, Samuel Albanie, Gang Sun, Enhua Wu, Jie Hu

Network-based analysis of genetic variants associated with hippocampal volume in Alzheimer’s disease: a study of ADNI cohorts

BioData Mining(2016)10.1186/s13040-016-0082-8

N/A

1.3DataRank · unranked

35 citations

Ailin Song, Jingwen Yan, Sungeun Kim, Aaron K. Wong, Andrew J. Saykin +3 more

FAM222A encodes a protein which accumulates in plaques in Alzheimer’s disease

Nature Communications(2020)10.1038/s41467-019-13962-0

N/A

1.2DataRank · unranked

33 citations

Jingjing Liang, Ju Gao, Luwen Wang, Hisashi Fujioka, The Alzheimer Disease Neuroimaging Initiative +92 more

The trend of disruption in the functional brain network topology of Alzheimer’s disease

Scientific Reports(2022)10.1038/s41598-022-18987-y

N/A

1.1DataRank · unranked

41 citations

Yousef Jamali, Mohammad Reza Raoufy, for the Alzheimer’s Disease Neuroimaging Initiative, Michael W. Weiner, Norbert Schuf +95 more

DALK: Dynamic Co-Augmentation of LLMs and KG to answer Alzheimer’s Disease Questions with Scientific Literature

PubMed(2024)10.18653/v1/2024.findings-emnlp.119

N/A

1.0DataRank · unranked

26 citations

Yang Shu, Zhen Tan, Jae Young Baik, Sukwon Yun, Joseph Lee +8 more

Multiomics analysis to explore blood metabolite biomarkers in an Alzheimer’s Disease Neuroimaging Initiative cohort

Scientific Reports(2024)10.1038/s41598-024-56837-1

Top 23%

0.874DataRank

Top 23%27 citations

Yuki Matsuzawa, Momoka Tsuneyoshi, Yoshitaka Nakamura, Ken Aoshima, Hiroshi Tsugawa +91 more

A novel spatiotemporal graph convolutional network framework for functional connectivity biomarkers identification of Alzheimer’s disease

Alzheimer s Research & Therapy(2024)10.1186/s13195-024-01425-8

N/A

0.690DataRank · unranked

20 citations

Le Xue, Shuoyan Zhang, Jiacheng Yang, Qi Zhang, Min Wang +95 more

Multivariate genome wide association and network analysis of subcortical imaging phenotypes in Alzheimer’s disease

BMC Genomics(2020)10.1186/s12864-020-07282-7

N/A

0.670DataRank · unranked

16 citations

Xianglian Meng, Jin Li, Qiushi Zhang, Feng Chen, Chenyuan Bian +8 more

Glucose metabolism in posterior cingulate cortex has supplementary value to predict the progression of cognitively unimpaired to dementia due to Alzheimer’s disease: an exploratory study of 18F-FDG-PET

GeroScience(2023)10.1007/s11357-023-00897-0

N/A

0.635DataRank · unranked

13 citations

Chunqiu Fan, Luyao Wang, Taoran Li, Min Wang, Ying Han +95 more

Brain-wide genome-wide colocalization study for integrating genetics, transcriptomics and brain morphometry in Alzheimer's disease

NeuroImage(2023)10.1016/j.neuroimage.2023.120346

Top 34%

0.574DataRank

Top 34%15 citations

Junhao Wen, Zixuan Wen, Shu Yang, Yuhan Cui, Zhijian Yang +6 more

Tissue-specific network-based genome wide study of amygdala imaging phenotypes to identify functional interaction modules

Bioinformatics(2017)10.1093/bioinformatics/btx344

N/A

0.489DataRank · unranked

25 citations

Jingwen Yan, Kefei Liu, Sungeun Kim, Kwangsik Nho, Shannon L. Risacher +6 more

Computational genetics analysis of grey matter density in Alzheimer’s disease

BioData Mining(2014)10.1186/1756-0381-7-17

N/A

0.400DataRank · unranked

9 citations

Jonathan M Fisher, Ting Hu, Peter C. Andrews, Casey S. Greene, Li Shen +6 more

Sex‐specific topological structure associated with dementia via latent space estimation

Alzheimer s & Dementia(2024)10.1002/alz.14266

N/A

0.385DataRank · unranked

6 citations

Yiting Wang, Frederick H. Xu, Xinyuan Tian, Carolyn Fredericks, Li Shen +3 more

Shared and divergent transcriptomic regulation in nucleus accumbens D1 and D2 medium spiny neurons by cocaine and morphine

bioRxiv (Cold Spring Harbor Laboratory)10.1101/2023.09.19.558477

N/A

0.369DataRank · unranked

8 citations

Philipp Mews, Xianxiao Zhou, Leanne M Holt, Molly Estill, Rita Futamura +7 more

Improved Prediction of Cognitive Outcomes via Globally Aligned Imaging Biomarker Enrichments over Progressions

Lecture Notes in Computer Science(2019)10.1007/978-3-030-32251-9_16

N/A

0.355DataRank · unranked

6 citations

Saad Elbeleidy, Lauren Baker, Hua Wang, Heng Huang, Li Shen +1 more

Histone H3 serotonylation dynamics in dorsal raphe nucleus contribute to stress- and antidepressant-mediated gene expression and behavior

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.04.539464

N/A

0.353DataRank · unranked

7 citations

Sasha L. Fulton, Giuseppina Di Salvo, Jennifer C Chan, Lorna A. Farrelly, Ashley E. Lepack +15 more

Distance-weighted Sinkhorn loss for Alzheimer’s disease classification

iScience(2024)10.1016/j.isci.2024.109212

N/A

0.346DataRank · unranked

5 citations

Qipeng Zhan, Boning Tong, Shu Yuan Yang, Bojian Hou, Heng Huang +5 more

Multi-organ imaging-derived polygenic indexes for brain and body health

medRxiv(2023)10.1101/2023.04.18.23288769

Top 53%

0.321DataRank

Top 53%6 citations

Patrick F. Sullivan, Bingxuan Li, Zirui Fan, Dezheng Ding, Juan Shu +11 more

Tensor-based Multi-Modality Feature Selection and Regression for Alzheimer’s Disease Diagnosis

PubMed(2022)10.5121/csit.2022.121812

N/A

0.310DataRank · unranked

3 citations

Zhaoming Kong, Liang Zhan, Li Shen, Lifang He, Jun Ye Yu

Using Optimal Transport to Improve Spherical Harmonic Quantification of Complex Biological Shapes

2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)(2022)10.1109/bibm55620.2022.9995036

N/A

0.269DataRank · unranked

5 citations

Wenxi Yang, Katharine Ryan, Sumita Garai, Benjamin M. Auerbach, Li Shen +1 more

Caudal and Thalamic Segregation in White Matter Brain Network Communities in Alzheimer's Disease Population

PubMed(2024)10.1109/bhi62660.2024.10913835

N/A

0.253DataRank · unranked

4 citations

Duy Duong‐Tran, Yize Zhao, Li Shen, Frederick Xu

Establishing group-level brain structural connectivity incorporating anatomical knowledge under latent space modeling

Medical Image Analysis(2024)10.1016/j.media.2024.103309

N/A

0.241DataRank · unranked

4 citations

Y.S. Wang, Frederick H. Xu, Li Shen, Yize Zhao, Selena Wang

Characteristics of discordance between amyloid positron emission tomography and plasma amyloid-β 42/40 positivity

Translational Psychiatry(2024)10.1038/s41398-024-02766-6

N/A

0.241DataRank · unranked

4 citations

Young Ho Park, Young Chul Youn, Min Ju Kang, Kyu Hwan Shim, Jae‐Won Jang +73 more

Mining High-Level Imaging Genetic Associations via Clustering AD Candidate Variants with Similar Brain Association Patterns

Genes(2022)10.3390/genes13091520

N/A

0.231DataRank · unranked

3 citations

Jingxuan Bao, Mansu Kim, Andrew J. Saykin, Jason H. Moore, Li Shen +2 more

QOT: Efficient Computation of Sample Level Distance Matrix from Single-Cell Omics Data through Quantized Optimal Transport

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.06.578032

N/A

0.229DataRank · unranked

3 citations

Qipeng Zhan, Shu Yang, Shizhuo Mu, Jiong Chen, Sumita Garai +4 more

Gene-SGAN: a method for discovering disease subtypes with imaging and genetic signatures via multi-view weakly-supervised deep clustering

PubMed(2023)10.48550/arxiv.2301.10772

N/A

0.222DataRank · unranked

3 citations

Junhao Wen, Ahmed Abdulkadir, Yuhan Cui, Guray Erus, Elizabeth Mamourian +23 more

Sex modifies effects of imaging and CSF biomarkers on cognitive and functional outcomes: a study of Alzheimer's disease

Neurobiology of Aging(2023)10.1016/j.neurobiolaging.2023.10.002

N/A

0.208DataRank · unranked

3 citations

Junwen Wang, Molly A. Hall, Dokyoon Kim, Shana D. Stites, Li Shen +1 more

Multi-Group Tensor Canonical Correlation Analysis

PubMed(2023)10.1145/3584371.3612962

N/A

0.208DataRank · unranked

3 citations

Boning Tong, Davoud Ataee Tarzanagh, Bojian Hou, Andrew J. Saykin, Qi Long +2 more

Deep learning enhanced ALPS reveals genetic and environmental factors of brain glymphatic function

eBioMedicine(2026)10.1016/j.ebiom.2026.106133

N/A

0.208DataRank · unranked

3 citations

Hao Wu, Wenbiao Xian, Yifan Zheng, Wenxuan Du, Xinyi Chen +1916 more

Modeling the impact of socioeconomic disparity, biological markers and environmental exposures on phenotypic age using mediation analysis and structural equation models

International Journal of Medical Informatics(2024)10.1016/j.ijmedinf.2024.105661

N/A

0.208DataRank · unranked

3 citations

Yuezhi Xie, Jia Xu, Li Shen, Daniele Pala

Bayesian pathway analysis over brain network mediators for survival data

Biometrics(2024)10.1093/biomtc/ujae132

N/A

0.165DataRank · unranked

2 citations

Fan Li, Li Shen, Denise Esserman, Yize Zhao, Xinyuan Tian

Genome Wide Analysis Across Alzheimer’s Disease Endophenotypes: Main Effects and Stage Specific Interactions

medRxiv(2021)10.1101/2021.08.13.21261887

Top 71%

0.127DataRank

Top 71%1 citations

Kwangsik Nho, Shannon L. Risacher, Sujuan Gao, Li Shen, Tatiana Foroud +3 more

Generalizable CT Vision-Language Modeling for Population Health and Disease Risk

medRxiv(2025)10.1101/2025.07.03.25330654

N/A

0.124DataRank · unranked

1 citations

Joonghyun Kim, Hamed Tavolinejad, Bingxin Zhao, Jessie Dong, Rakesh Sharma +21 more

Genetic Influence Underlying Brain Connectivity Phenotype: A Study on Two Age-Specific Cohorts

Frontiers in Genetics(2022)10.3389/fgene.2021.782953

N/A

0.104DataRank · unranked

1 citations

Xiaohui Yao, Linhui Xie, Jingwen Yan, Li Shen, and the Alzheimer’s Disease Neuroimaging Initiative +1 more

Online Bilevel Optimization: Regret Analysis of Online Alternating Gradient Methods

PubMed(2022)10.48550/arxiv.2207.02829

N/A

0DataRank · unranked

0 citations

Parvin Nazari, Bojian Hou, Li Shen, Laura Balzano, Davoud Ataee Tarzanagh

Genomic loci influence patterns of structural covariance in the human brain

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2300842120

N/A

0DataRank · unranked

36 citations

Ilya M. Nasrallah, Ahmed Abdulkadir, Theodore D. Satterthwaite, Zhijian Yang, Guray Erus +61 more

An interpretable Alzheimer’s disease oligogenic risk score informed by neuroimaging biomarkers improves risk prediction and stratification

Frontiers in Aging Neuroscience(2023)10.3389/fnagi.2023.1281748

N/A

0DataRank · unranked

8 citations

Garam Lee, Sang‐Hyuk Jung, Zixuan Wen, Jingxuan Bao, Kwangsik Nho +8 more

Integrative analysis of multi-omics and imaging data with incorporation of biological information via structural Bayesian factor analysis

Briefings in Bioinformatics(2023)10.1093/bib/bbad073

N/A

0DataRank · unranked

13 citations

Changgee Chang, Qiyiwen Zhang, Andrew J. Saykin, Li Shen, Qi Long +2 more

Preference matrix guided sparse canonical correlation analysis for mining brain imaging genetic associations in Alzheimer's disease

Methods(2023)10.1016/j.ymeth.2023.07.007

N/A

0DataRank · unranked

6 citations

Jingxuan Bao, Kefei Liu, Shu Yang, Zixuan Wen, Junhao Wen +8 more

Fair Canonical Correlation Analysis

PubMed(2023)10.48550/arxiv.2309.15809

N/A

0DataRank · unranked

3 citations

Davoud Ataee Tarzanagh, Bojian Hou, Boning Tong, Jia Xu, Yanbo Feng +3 more

Genome-Wide Association Analysis across Endophenotypes in Alzheimer’s Disease: Main Effects and Disease Stage-Specific Interactions

Genes(2023)10.3390/genes14112010

N/A

0DataRank · unranked

3 citations

Kwangsik Nho, Shannon L. Risacher, Sujuan Gao, Li Shen, Tatiana Foroud +3 more

Class-Balanced Deep Learning with Adaptive Vector Scaling Loss for Dementia Stage Detection

Lecture notes in computer science(2023)10.1007/978-3-031-45676-3_15

N/A

0DataRank · unranked

2 citations

Zhuoping Zhou, Davoud Ataee Tarzanagh, Bojian Hou, Andrew J. Saykin, Jason H. Moore +3 more

Establishing group-level brain structural connectivity incorporating anatomical knowledge under latent space modeling

arXiv (Cornell University)(2023)10.48550/arxiv.2304.01345

N/A

0DataRank · unranked

1 citations

Wang, Yiting, Frederick H. Xu, Li Shen, Yize Zhao, Selena Wang

Identifying Shared Neuroanatomic Architecture Between Cognitive Traits Through Multiscale Morphometric Correlation Analysis

Lecture notes in computer science(2023)10.1007/978-3-031-47425-5_21

N/A

0DataRank · unranked

1 citations

Jingxuan Bao, Shu Yang, Shannon L. Risacher, Andrew J. Saykin, Paul M. Thompson +5 more

Homological landscape of human brain functional sub-circuits

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.22.573062

N/A

0DataRank · unranked

0 citations

Ralph M. Kaufmann, Jiong Chen, Xuan Wang, Sumita Garai, Frederick Xu +8 more

The genetic architecture of multimodal human brain age

Nature Communications(2024)10.1038/s41467-024-46796-6

N/A

0DataRank · unranked

63 citations

Bingxin Zhao, Zhijian Yang, Guray Erus, Ioanna Skampardoni, Elizabeth Mamourian +13 more

Gene-SGAN: discovering disease subtypes with imaging and genetic signatures via multi-view weakly-supervised deep clustering

Nature Communications(2024)10.1038/s41467-023-44271-2

N/A

0DataRank · unranked

49 citations

Junhao Wen, Ahmed Abdulkadir, Yuhan Cui, Guray Erus, Elizabeth Mamourian +23 more

Multi-Modal Diagnosis of Alzheimer’s Disease Using Interpretable Graph Convolutional Networks

IEEE Transactions on Medical Imaging(2024)10.1109/tmi.2024.3432531

N/A

0DataRank · unranked

38 citations

Lifang He, Brian Y. Chen, Li Shen, Yu Zhang, Houliang Zhou

Genetic and clinical correlates of two neuroanatomical AI dimensions in the Alzheimer’s disease continuum

Translational Psychiatry(2024)10.1038/s41398-024-03121-5

N/A

0DataRank · unranked

21 citations

Zhijian Yang, Ilya M. Nasrallah, Yuhan Cui, Guray Erus, Dhivya Srinivasan +45 more

Identifying Progression-Specific Alzheimer’s Subtypes Using Multimodal Transformer

Journal of Personalized Medicine(2024)10.3390/jpm14040421

N/A

0DataRank · unranked

14 citations

Hanqing Chao, Juergen Hahn, Li Shen, Pingkun Yan, for the Alzheimer’s Disease Neuroimaging Initiative +1 more

Interpretable deep clustering survival machines for Alzheimer’s disease subtype discovery

Medical Image Analysis(2024)10.1016/j.media.2024.103231

N/A

0DataRank · unranked

8 citations

Zixuan Wen, Jingxuan Bao, R.F Zhang, Boning Tong, Shu Yang +10 more

Identifying biological markers and sociodemographic factors that influence the gap between phenotypic and chronological ages

Informatics for Health and Social Care(2024)10.1080/17538157.2024.2400247

N/A

0DataRank · unranked

2 citations

Jia Xu, Yuezhi Xie, Yuqin Zhang, Li Shen, Daniele Pala

Homological Landscape of Human Brain Functional Sub-Circuits

Mathematics(2024)10.3390/math12030455

N/A

0DataRank · unranked

11 citations

Ralph M. Kaufmann, Jiong Chen, Xuan Wang, Sumita Garai, Frederick H. Xu +8 more

A Principled Framework to Assess the Information-Theoretic Fitness of Brain Functional Sub-Circuits

Mathematics(2024)10.3390/math12192967

N/A

0DataRank · unranked

6 citations

Nghi Nguyen, Shizhuo Mu, Jiong Chen, Jingxuan Bao, Frederick H. Xu +8 more

Employing Informatics Strategies in Alzheimer's Disease Research: A Review from Genetics, Multiomics, and Biomarkers to Clinical Outcomes

Annual Review of Biomedical Data Science(2024)10.1146/annurev-biodatasci-102423-121021

N/A

0DataRank · unranked

4 citations

Brian N. Lee, Junhao Wen, Mansu Kim, Shizhuo Mu, Shuhua Yang +5 more

Incorporating graph information in Bayesian factor analysis with robust and adaptive shrinkage priors

Biometrics(2024)10.1093/biomtc/ujad014

N/A

0DataRank · unranked

4 citations

Changgee Chang, Li Shen, Qi Long, Qiyiwen Zhang

QOT: Quantized Optimal Transport for sample-level distance matrix in single-cell omics

Briefings in Bioinformatics(2024)10.1093/bib/bbae713

N/A

0DataRank · unranked

3 citations

Qipeng Zhan, Shu Yang, Shizhuo Mu, Jiong Chen, Sumita Garai +4 more

Preserving Human Large-Scale Brain Connectivity Fingerprint Identifiability with Random Projections

PubMed(2024)10.1109/isbi56570.2024.10635372

N/A

0DataRank · unranked

6 citations

Mark Magsino, Joaquín Goñi, Li Shen, Duy Duong‐Tran

Causality-based Subject and Task Fingerprints using fMRI Time-series Data

PubMed(2024)10.1145/3698587.3701342

N/A

0DataRank · unranked

5 citations

Li Shen, Duy Duong‐Tran, Xuan Wang, Demin Song

Multimodal Neurodegenerative Disease Subtyping Explained by ChatGPT

arXiv (Cornell University)(2024)10.48550/arxiv.2402.00137

N/A

0DataRank · unranked

3 citations

Hanqing Chao, Juergen Hahn, Li Shen, Pingkun Yan, Diego Machado Reyes

DALK: Dynamic Co-Augmentation of LLMs and KG to answer Alzheimer's Disease Questions with Scientific Literature

arXiv (Cornell University)(2024)10.48550/arxiv.2405.04819

N/A

0DataRank · unranked

3 citations

Yang Shu, Zhen Tan, Jae Young Baik, Yun, Sukwon, Joseph Lee +8 more

Uncovering Important Diagnostic Features for Alzheimer’s, Parkinson’s and Other Dementias Using Interpretable Association Mining Methods

PubMed(2024)10.1142/9789819807024_0045

N/A

0DataRank · unranked

3 citations

Mary Regina Boland, Bojian Hou, Victoria Lu, Carol Manning, Li Shen +2 more

Volume-Optimal Persistence Homological Scaffolds of Hemodynamic Networks Covary with MEG Theta-Alpha Aperiodic Dynamics

Lecture notes in computer science(2024)10.1007/978-3-031-72384-1_49

N/A

0DataRank · unranked

2 citations

Tao Hou, Enrico Amico, Jingyi Zheng, Huajun Huang, Alan D. Kaplan +7 more

Nano-trapping CXCL13 reduces regulatory B cells in tumor microenvironment and inhibits tumor growth

Carolina Digital Repository (University of North Carolina at Chapel Hill)(2024)10.17615/z38x-2w53

N/A

0DataRank · unranked

0 citations

Karthik Tiruthani, Wenli Song, Liu‐Ye Huang, Suk‐King Lai, Ju Li +7 more

A principled framework to assess the information-theoretic fitness of brain functional sub-circuits

PubMed(2024)10.48550/arxiv.2406.18531

N/A

0DataRank · unranked

0 citations

Nghi Nguyen, Shizhuo Mu, Jiong Chen, Jingxuan Bao, Frederick Xu +8 more

A Principled Framework to Assess the Information-Theoretic Fitness of Brain Functional Sub-Circuits

UNC Libraries(2024)10.17615/78m2-k286

N/A

0DataRank · unranked

0 citations

Frederick H. Xu, Sumita Garai, Duy Duong‐Tran, Yize Zhao, Nghi Nguyen +8 more

Clustering Alzheimer's Disease Subtypes via Similarity Learning and Graph Diffusion

arXiv (Cornell University)(2024)10.48550/arxiv.2410.03937

N/A

0DataRank · unranked

0 citations

Shu Yang, Davoud Ataee Tarzanagh, Jingxuan Bao, Jia Xu, Patryk Orzechowski +4 more

SEFD: Semantic-Enhanced Framework for Detecting LLM-Generated Text

arXiv (Cornell University)(2024)10.48550/arxiv.2411.12764

N/A

0DataRank · unranked

0 citations

Bojian Hou, Tianqi Shang, Davoud Ataee Tarzanagh, Qi Long, Li Shen +1 more

SDoH-GPT: using large language models to extract social determinants of health

Journal of the American Medical Informatics Association(2025)10.1093/jamia/ocaf094

N/A

0DataRank · unranked

12 citations

Haoyang Wang, Xizhi Wu, Song Wang, Xingyu Zhao, Yanshan Wang +9 more

Predicting explainable dementia types with LLM-aided feature engineering

Bioinformatics(2025)10.1093/bioinformatics/btaf156

N/A

0DataRank · unranked

9 citations

Delip Rao, Mary Regina Boland, Li Shen, Chris Callison-Burch, Aditya Kashyap

Automated cytometric gating with human-level performance using bivariate segmentation

Nature Communications(2025)10.1038/s41467-025-56622-2

N/A

0DataRank · unranked

8 citations

Matei Ionita, Yanbo Feng, Yinfeng Lu, Patryk Orzechowski, Sumita Garai +14 more

Major-depressive-disorder-associated dysregulation of ZBTB7A in orbitofrontal cortex promotes astrocyte-mediated stress susceptibility

Neuron(2025)10.1016/j.neuron.2025.05.023

N/A

0DataRank · unranked

7 citations

Jaroslav Bendl, G. Salvo, John F. Fullard, Amni Al-Kachak, Ashley E. Lepack +24 more

Advanced topic modeling with large language models: analyzing social media content from dementia caregivers

Innovation in Aging(2025)10.1093/geroni/igaf120

N/A

0DataRank · unranked

3 citations

Bojian Hou, Amy Zheng, Yanbo Feng, Ari Z Klein, Karen O’Connor +6 more

A novel computational analysis integrating social determinants information from EHR and literature with Alzheimer’s disease biological knowledge through large language models and knowledge graphs

Innovation in Aging(2025)10.1093/geroni/igaf102

N/A

0DataRank · unranked

3 citations

Shu Yang, Tianhua Zhai, Weiqing He, Elizabeth Mamourian, Jiayu Zhang +7 more

Integrative multi-omics approaches identify molecular pathways and improve Alzheimer’s Disease risk prediction

medRxiv(2025)10.1101/2025.05.31.25328688

N/A

0DataRank · unranked

1 citations

Katie M. Cardone, Yuki Bradford, Anni Moore, Rachit Kumar, Jason H. Moore +4 more

Enabling Few-Shot Alzheimer's Disease Diagnosis on Biomarker Data with Tabular LLMs

PubMed(2025)10.1145/3765612.3767229

N/A

0DataRank · unranked

1 citations

Shu Yang, Zixuan Wen, Bojian Hou, Duy Duong‐Tran, Tianlong Chen +4 more

S‐GMAS: Genome‐Wide Mediation Analysis With Brain Subcortical Shape Mediators

Human Brain Mapping(2025)10.1002/hbm.70297

N/A

0DataRank · unranked

0 citations

Rongjie Liu, Anuj Srivastava, Richard S. Nowakowski, Li Shen, Paul M. Thompson +3 more

Reconstructing brain causal dynamics for subject and task fingerprints using fMRI time-series data

Health Information Science and Systems(2025)10.1007/s13755-025-00388-w

N/A

0DataRank · unranked

0 citations

Li Shen, Duy Duong‐Tran, Xuan Wang, Dachuan Song

H-VIP: quantifying regional topological contributions of the brain network to cognition

Frontiers in Radiology(2025)10.3389/fradi.2025.1686780

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0DataRank · unranked

0 citations

Sandra Vo, Lucy Blank, Frederick Xu, Jiong Chen, Duy Duong‐Tran +4 more

Fair CCA for Fair Representation Learning: An ADNI Study

PubMed(2025)10.1145/3765612.3767215

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0DataRank · unranked

0 citations

Zhanliang Wang, Zhuoping Zhou, Boning Tong, Zexuan Wang, Jingxuan Bao +4 more

Session Introduction: Translating Big Data Imaging Genomics Findings to the Individual: Prediction of Risks and Outcomes in Neuropsychiatric Illnesses

PubMed(2024)10.1142/9789819807024_0042

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0DataRank · unranked

0 citations

Li Shen, Zhongming Zhao, Paul M. Thompson, Peter Kochunov

Personalized gene expression prediction in the era of deep learning: a review

Briefings in Bioinformatics(2026)10.1093/bib/bbag022

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0DataRank · unranked

0 citations

Li Shen, V.K. Dubey, Viksar Dubey

Network-based analysis of genetic variants associated with hippocampal volume in Alzheimer’s disease: a study of ADNI cohorts

PMC(2016)10.6084/m9.figshare.c.3643697

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0DataRank · unranked

0 citations

Jingwen Yan, Sungeun Kim, Shannon L. Risacher, Aaron K. Wong, Andrew J. Saykin +3 more

Functional brain architecture is associated with the rate of tau accumulation in Alzheimer’s disease

Nature Communications(2020)10.1038/s41467-019-14159-1

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0DataRank · unranked

347 citations

Julia Neitzel, Anna Rubinski, Ruben Smith, Olof Strandberg, Rik Ossenkoppele +91 more

Detecting genetic associations with brain imaging phenotypes in Alzheimer’s disease via a novel structured SCCA approach

Medical Image Analysis(2020)10.1016/j.media.2020.101656

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0DataRank · unranked

87 citations

Kefei Liu, Xiaohui Yao, Shannon L. Risacher, Junwei Han, Andrew J. Saykin +3 more

Women can bear a bigger burden: ante- and post-mortem evidence for reserve in the face of tau

Brain Communications(2020)10.1093/braincomms/fcaa025

N/A

0DataRank · unranked

86 citations

John Madsen, Robert A. Rissman, Diane M. Jacobs, James Brewer, Sarah J. Banks +90 more

Brain-wide structural connectivity alterations under the control of Alzheimer risk genes

International Journal of Computational Biology and Drug Design(2020)10.1504/ijcbdd.2020.105098

N/A

0DataRank · unranked

14 citations

V. Vinesh Raja, Zhi Huang, Enrico Amico, Kwangsik Nho, Shiaofen Fang +6 more

A telescope GWAS analysis strategy, based on SNPs-genes-pathways ensamble and on multivariate algorithms, to characterize late onset Alzheimer’s disease

Scientific Reports(2020)10.1038/s41598-020-67699-8

N/A

0DataRank · unranked

20 citations

Giulia Abate, Federico Tomasi, Veronica Tozzo, Annalisa Barla, Daniela Uberti +95 more

Effect of APOE ε4 on multimodal brain connectomic traits: a persistent homology study

BMC Bioinformatics(2020)10.1186/s12859-020-03877-9

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0DataRank · unranked

13 citations

Jin Li, Chenyuan Bian, Dandan Chen, Xianglian Meng, Haoran Luo +3 more

Volumetric GWAS of medial temporal lobe structures identifies an ERC1 locus using ADNI high-resolution T2-weighted MRI data

Neurobiology of Aging(2020)10.1016/j.neurobiolaging.2020.07.005

N/A

0DataRank · unranked

12 citations

Xiaohui Yao, Zhi Huang, Shannon L. Risacher, Kwangsik Nho, Andrew J. Saykin +2 more

Cognitive biomarker prioritization in Alzheimer’s Disease using brain morphometric data

BMC Medical Informatics and Decision Making(2020)10.1186/s12911-020-01339-z

N/A

0DataRank · unranked

10 citations

Bo Peng, Xiaohui Yao, Shannon L. Risacher, Andrew J. Saykin, Li Shen +2 more

Associating Multi-Modal Brain Imaging Phenotypes and Genetic Risk Factors via a Dirty Multi-Task Learning Method

IEEE Transactions on Medical Imaging(2020)10.1109/tmi.2020.2995510

N/A

0DataRank · unranked

44 citations

Fang Liu, Kefei Liu, Xiaohui Yao, Shannon L. Risacher, Junwei Han +3 more

Identifying diagnosis-specific genotype–phenotype associations via joint multitask sparse canonical correlation analysis and classification

Bioinformatics(2020)10.1093/bioinformatics/btaa434

N/A

0DataRank · unranked

38 citations

Fang Liu, Kefei Liu, Xiaohui Yao, Shannon L. Risacher, Junwei Han +5 more

Mixture drug-count response model for the high-dimensional drug combinatory effect on myopathy

UNC Libraries(2020)10.17615/sz4r-f204

N/A

0DataRank · unranked

0 citations

Feng, W., Quinney, S.K., Zeng, D., Li Shen, Xia Ning +6 more

Accelerated functional brain aging in pre-clinical familial Alzheimer’s disease

Nature Communications(2021)10.1038/s41467-021-25492-9

N/A

0DataRank · unranked

103 citations

Alex T. Baria, Alexa Pichet Binette, Brian A. Gordon, Jasmeer P. Chhatwal, Carlos Cruchaga +94 more

A deep learning framework identifies dimensional representations of Alzheimer’s Disease from brain structure

Nature Communications(2021)10.1038/s41467-021-26703-z

N/A

0DataRank · unranked

103 citations

Ilya M. Nasrallah, Haochang Shou, Junhao Wen, Jimit Doshi, Mohamad Habes +95 more

A meta‐analysis of deep brain structural shape and asymmetry abnormalities in 2,833 individuals with schizophrenia compared with 3,929 healthy volunteers via the ENIGMA Consortium

Human Brain Mapping(2021)10.1002/hbm.25625

N/A

0DataRank · unranked

76 citations

Theo G.M. van Erp, Kathryn Alpert, Christopher R. K. Ching, Dmitry Isaev, Anjani Ragothaman +79 more

Multi-task learning based structured sparse canonical correlation analysis for brain imaging genetics

Medical Image Analysis(2021)10.1016/j.media.2021.102297

N/A

0DataRank · unranked

29 citations

Eun Jeong Min, Kefei Liu, Jingwen Yan, Andrew J. Saykin, Jason H. Moore +3 more

A structural enriched functional network: An application to predict brain cognitive performance

Medical Image Analysis(2021)10.1016/j.media.2021.102026

N/A

0DataRank · unranked

24 citations

Jingxuan Bao, Kefei Liu, Bo‐yong Park, Hyunjin Park, Jae Young Baik +2 more

White Matter Integrity and Nicotine Dependence: Evaluating Vertical and Horizontal Pleiotropy

Frontiers in Neuroscience(2021)10.3389/fnins.2021.738037

N/A

0DataRank · unranked

11 citations

Chen Mo, Song Liu, Kathryn S. Hatch, Si Gao, Yizhou Ma +11 more

Improved Prediction of Cognitive Outcomes via Globally Aligned Imaging Biomarker Enrichments Over Progressions

IEEE Transactions on Biomedical Engineering(2021)10.1109/tbme.2021.3070875

N/A

0DataRank · unranked

8 citations

Saad Elbeleidy, Lauren Zoe Baker, Hua Wang, Li Shen, Heng Huang +1 more

Interpretable temporal graph neural network for prognostic prediction of Alzheimer’s disease using longitudinal neuroimaging data

2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)(2021)10.1109/bibm52615.2021.9669504

N/A

0DataRank · unranked

25 citations

Jaesik Kim, Jeffrey Qu, Heng Huang, Qi Long, Kyung-Ah Sohn +3 more

Identifying highly heritable brain amyloid phenotypes through mining Alzheimer’s imaging and sequencing biobank data

PubMed(2021)10.1142/9789811250477_0011

N/A

0DataRank · unranked

6 citations

Zixuan Wen, Mansu Kim, Xiwen Zhao, Brian N. Lee, Sang‐Hyuk Jung +7 more

Identifying imaging genetic associations via regional morphometricity estimation

PubMed(2021)10.1142/9789811250477_0010

N/A

0DataRank · unranked

3 citations

Zixuan Wen, Mansu Kim, Andrew J. Saykin, Paul M. Thompson, Yize Zhao +2 more

Interactive Visualization of Deep Learning for 3D Brain Data Analysis

IUScholarWorks (Indiana University)(2021)10.1109/iccicc53683.2021.9811312

N/A

0DataRank · unranked

2 citations

Shiaofen Fang, Joaquín Goñi, Andrew J. Saykin, Li Shen, Li Huang

Genetic Influence underlying Brain Connectivity Phenotype: A Study on Two Age-Specific Cohorts

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.23.457353

N/A

0DataRank · unranked

0 citations

Xiaohui Yao, Linhui Xie, Jingwen Yan, Li Shen, for the Alzheimer’s Disease Neuroimaging Initiative +1 more

Session Introduction: Big Data Imaging Genomics

PubMed(2021)10.1142/9789811250477_0007

N/A

0DataRank · unranked

0 citations

Li Shen, John D. Van Horn, Paul M. Thompson, Peter Kochunov

Integrating multi-omics summary data using a Mendelian randomization framework

Briefings in Bioinformatics(2022)10.1093/bib/bbac376

N/A

0DataRank · unranked

31 citations

Brian Lee, Li Shen, Qi Long, for the Alzheimer’s Disease Neuroimaging Initiative, Chong Jin

Sex Differences in the Metabolome of Alzheimer's Disease Progression

Frontiers in Radiology(2022)10.3389/fradi.2022.782864

N/A

0DataRank · unranked

18 citations

Brian Lee, Rory Coughlin, Dokyoon Kim, Li Shen, Molly A. Hall +1 more

Genome-Wide association study of quantitative biomarkers identifies a novel locus for alzheimer’s disease at 12p12.1

BMC Genomics(2022)10.1186/s12864-021-08269-8

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0DataRank · unranked

15 citations

Xiaohui Yao, Li Shen, for the Alzheimer’s Disease Neuroimaging Initiative, Brian Lee

Deep multiview learning to identify imaging-driven subtypes in mild cognitive impairment

BMC Bioinformatics(2022)10.1186/s12859-022-04946-x

N/A

0DataRank · unranked

15 citations

Mansu Kim, Xiaohui Yao, Kefei Liu, Qi Long, Li Shen +2 more

Identifying genetic markers enriched by brain imaging endophenotypes in Alzheimer’s disease

BMC Medical Genomics(2022)10.1186/s12920-022-01323-8

N/A

0DataRank · unranked

5 citations

Ruiming Wu, Xiaohui Yao, Andrew J. Saykin, Jason H. Moore, Li Shen +2 more

Identifying genes associated with brain volumetric differences through tissue specific transcriptomic inference from GWAS summary data

BMC Bioinformatics(2022)10.1186/s12859-022-04947-w

N/A

0DataRank · unranked

3 citations

Jingxuan Bao, Paul M. Thompson, Dokyoon Kim, Li Shen, Hung Mai

Consistency of Graph Theoretical Measurements of Alzheimer’s Disease Fiber Density Connectomes Across Multiple Parcellation Scales

2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)(2022)10.1109/bibm55620.2022.9995657

N/A

0DataRank · unranked

19 citations

Sumita Garai, Duy Duong‐Tran, Andrew J. Saykin, Yize Zhao, Li Shen +1 more

Genetic, Clinical Underpinnings of Brain Change Along Two Neuroanatomical Dimensions of Clinically-defined Alzheimer’s Disease

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.16.508329

N/A

0DataRank · unranked

14 citations

Zhijian Yang, Ilya M. Nasrallah, Yuhan Cui, Guray Erus, Dhivya Srinivasan +47 more

Mediation Analysis and Mixed-Effects Models for the Identification of Stage-specific Imaging Genetics Patterns in Alzheimer’s Disease

2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)(2022)10.1109/bibm55620.2022.9995405

N/A

0DataRank · unranked

6 citations

Brian Lee, Xia Ning, Dokyoon Kim, Li Shen, Daniele Pala

Novel genomic loci influence patterns of structural covariance in the human brain

medRxiv(2022)10.1101/2022.07.20.22277727

N/A

0DataRank · unranked

5 citations

Ilya M. Nasrallah, Ahmed Abdulkadir, Theodore D. Satterthwaite, Zhijian Yang, Guray Erus +66 more

Mega-analysis of brain structural covariance, genetics, and clinical phenotypes

Research Square(2022)10.21203/rs.3.rs-1503113/v1

N/A

0DataRank · unranked

2 citations

Ilya M. Nasrallah, Ahmed Abdulkadir, Theodore D. Satterthwaite, Guray Erus, Timothy Robert‐Fitzgerald +58 more

Preference Matrix Guided Sparse Canonical Correlation Analysis for Genetic Study of Quantitative Traits in Alzheimer’s Disease

2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)(2022)10.1109/bibm55620.2022.9995342

N/A

0DataRank · unranked

0 citations

Jingxuan Bao, Kefei Liu, Shu Yang, Zixuan Wen, Yuhan Cui +7 more

Li Shen

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