Ramón Lorenzo-Redondo

Also affiliated with Office of Infectious Diseases

MedicineImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 48 papers. Top paper: “A clade of SARS-CoV-2 viruses associated with lower viral loads in patient upper airways”.

A clade of SARS-CoV-2 viruses associated with lower viral loads in patient upper airways

EBioMedicine(2020)10.1016/j.ebiom.2020.103112

N/A

0.689DataRank · unranked

98 citations

Hannah Nam, Scott C. Roberts, Lacy M. Simons, Lawrence J. Jennings, Chao Qi +6 more

A Unique Clade of SARS-CoV-2 Viruses is Associated with Lower Viral Loads in Patient Upper Airways

medRxiv(2020)10.1101/2020.05.19.20107144

N/A

0.646DataRank · unranked

73 citations

Hannah Nam, Scott C. Roberts, Lacy M. Simons, Lawrence J. Jennings, Chao Qi +6 more

TGF-β blockade drives a transitional effector phenotype in T cells reversing SIV latency and decreasing SIV reservoirs in vivo

Nature Communications(2024)10.1038/s41467-024-45555-x

N/A

0.527DataRank · unranked

15 citations

Deepanwita Bose, Mariluz Araínga, Muhammad R. Haque, Christine M. Fennessey, Rachel A Caddell +14 more

Rapid and Sensitive Detection of Antigen from SARS-CoV-2 Variants of Concern by a Multivalent Minibinder-Functionalized Nanomechanical Sensor

Analytical Chemistry(2022)10.1021/acs.analchem.2c01221

N/A

0.345DataRank · unranked

9 citations

Andrew C. Hunt, Gajendra S. Shekhawat, Lauren Carter, Sidney Chan, Kejia Wu +9 more

Localization of infection in neonatal rhesus macaques after oral viral challenge

PLoS Pathogens(2021)10.1371/journal.ppat.1009855

N/A

0.330DataRank · unranked

8 citations

Michael D. McRaven, Ann M. Carias, Meegan R. Anderson, Edgar Matias, Mariluz Araínga +12 more

Transitions in lung microbiota landscape associate with distinct patterns of pneumonia progression

Cell Host & Microbe(2025)10.1016/j.chom.2025.11.011

N/A

0.269DataRank · unranked

5 citations

Stefanie Huttelmaier, Chiagozie I. Pickens, Anahid A. Moghadam, Hiam Abdala‐Valencia, Jiaxian Shen +95 more

Endocervix exhibits greater susceptibility to HIV-1 infection compared to ectocervix following ex vivo exposure to Transmitted/Founder HIV-1 variants

PLoS ONE(2025)10.1371/journal.pone.0334510

N/A

0.104DataRank · unranked

1 citations

Michael D. McRaven, Ramón Lorenzo-Redondo, Teresia Muhomah, Ann M. Carias, Muhammad Shoaib Arif +7 more

Intra-Host Evolution of SARS-CoV-2 During Persistent Infection of Pediatric COVID-19 Patients

Viruses(2025)10.3390/v17101313

N/A

0.104DataRank · unranked

1 citations

Tien Doan, Estefany Rios-Guzman, Jessica Maciuch, Lacy M. Simons, Dulce S. Garcia +6 more

Challenges and Opportunities for Global Genomic Surveillance Strategies in the COVID-19 Era

Viruses(2022)10.3390/v14112532

N/A

0DataRank · unranked

52 citations

Estefany Rios-Guzman, Ramón Lorenzo-Redondo, Egon A. Ozer, Judd F. Hultquist, Ted Ling-Hu

Blockade of TGF-β signaling reactivates HIV-1/SIV reservoirs and immune responses in vivo

JCI Insight(2022)10.1172/jci.insight.162290

N/A

0DataRank · unranked

26 citations

Yanique Thomas, Mariluz Araínga, Crystal Carter, Lisa Shirreff, Muhammad Arif +20 more

Multiple expansions of globally uncommon SARS-CoV-2 lineages in Nigeria

Nature Communications(2022)10.1038/s41467-022-28317-5

N/A

0DataRank · unranked

50 citations

Lacy M. Simons, O. M. Adewumi, Adeola Fowotade, Ewean Chukwuma Omoruyi, Johnson Adekunle Adeniji +15 more

Severity of Illness Caused by Severe Acute Respiratory Syndrome Coronavirus 2 Variants of Concern in Children: A Single-Center Retrospective Cohort Study

Journal of the Pediatric Infectious Diseases Society(2022)10.1093/jpids/piac068

N/A

0DataRank · unranked

26 citations

Ramón Lorenzo-Redondo, Megan E. Reyna, Lacy M. Simons, Judd F. Hultquist, Ami B. Patel +10 more

Transcriptome-wide changes in gene expression, splicing, and lncRNAs in response to a live attenuated dengue virus vaccine

Cell Reports(2022)10.1016/j.celrep.2022.110341

N/A

0DataRank · unranked

20 citations

Yan Che, Hansi Dean, Ramón Lorenzo-Redondo, Michael G. Stewart, Caroline Keller +10 more

Serological Markers of SARS-CoV-2 Reinfection

mBio(2022)10.1128/mbio.02141-21

N/A

0DataRank · unranked

16 citations

Kathryn Bowman, Alex Zhu, Stephanie Fischinger, Samuel Beger, Jenny S. Maron +25 more

Assessment of Virological Contributions to COVID-19 Outcomes in a Longitudinal Cohort of Hospitalized Adults

Open Forum Infectious Diseases(2022)10.1093/ofid/ofac027

N/A

0DataRank · unranked

12 citations

Ramón Lorenzo-Redondo, Meg Gibson, Sarah L. Kinch, Jacob P. Vandervaart, Nina L. Reiser +13 more

ViralVar: A Web Tool for Multilevel Visualization of SARS-CoV-2 Genomes

Viruses(2022)10.3390/v14122714

N/A

0DataRank · unranked

6 citations

Lukasz Jaroszewski, Adam Godzik, Arash Iranzadeh, Lacy M. Simons, Taylor J. Dean +4 more

An immunoPET probe to SARS-CoV-2 reveals early infection of the male genital tract in rhesus macaques

Research Square(2022)10.21203/rs.3.rs-1479315/v1

N/A

0DataRank · unranked

11 citations

Yanique Thomas, Robert V. Blair, Sadia Samer, Mark Doyle, Cecily C. Midkiff +13 more

An immunoPET probe to SARS-CoV-2 reveals early infection of the male genital tract in rhesus macaques

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.25.481974

N/A

0DataRank · unranked

7 citations

Yanique Thomas, Robert V. Blair, Sadia Samer, Mark Doyle, Cecily C. Midkiff +13 more

Blockade of TGF-β signaling reactivates HIV-1/SIV reservoirs and immune responses in vivo

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.13.489595

N/A

0DataRank · unranked

1 citations

Yanique Thomas, Mariluz Araínga, CM Carter, LM Shirreff, MS Arif +20 more

ViralVar: A Web Tool for Multilevel Visualization of SARS-CoV-2 Genomes

Preprints.org(2022)10.20944/preprints202210.0241.v1

N/A

0DataRank · unranked

0 citations

Lukasz Jaroszewski, Adam Godzik, Arash Iranzadeh, Lacy M. Simons, Taylor Joseph Dean +4 more

Large library docking for novel SARS‐CoV ‐2 main protease non‐covalent and covalent inhibitors

Protein Science(2023)10.1002/pro.4712

N/A

0DataRank · unranked

43 citations

Conner Bardine, Stefan Gahbauer, Isha Singh, Tyler C. Detomasi, Kris M. White +26 more

SARS-CoV-2 genomics and impact on clinical care for COVID-19

Journal of Antimicrobial Chemotherapy(2023)10.1093/jac/dkad309

N/A

0DataRank · unranked

12 citations

Alexandre Machado de Sant’Anna Carvalho, Judd F. Hultquist, Egon A. Ozer, Ramón Lorenzo-Redondo

Resurgence of SARS-CoV-2 Delta after Omicron variant superinfection in an immunocompromised pediatric patient

Virology Journal(2023)10.1186/s12985-023-02186-w

N/A

0DataRank · unranked

3 citations

Lacy M. Simons, Maria Francesca Reyes Agnes, Taylor Heald‐Sargent, William J. Muller, Larry K. Kociolek +4 more

Altered RSV Epidemiology and Genetic Diversity Following the COVID-19 Pandemic

Research Square(2023)10.21203/rs.3.rs-3712859/v1

N/A

0DataRank · unranked

5 citations

Estefany Rios-Guzman, Lacy M. Simons, Taylor J. Dean, Francesca Agnes, Anna Pawlowski +6 more

SARS-CoV-2 Bottlenecks and Tissue-Specific Adaptation in the Central Nervous System

Research Square(2023)10.21203/rs.3.rs-3220157/v1

N/A

0DataRank · unranked

2 citations

Jacob Class, Lacy M. Simons, Ramón Lorenzo-Redondo, Laura Cooper, Tanushree Dangi +5 more

Temporal and spatial characterization of HIV/SIV infection at anorectal mucosa using rhesus macaque rectal challenge model

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.22.529624

N/A

0DataRank · unranked

1 citations

Lisette Corbin, N. Greco, Ramón Lorenzo-Redondo, Michael D. McRaven, Ronald S. Veazey +2 more

TGF-β blockade drives a transitional effector phenotype in T cells reversing SIV latency and decreasing SIV reservoirs in vivo

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.05.556422

N/A

0DataRank · unranked

1 citations

Deepanwita Bose, Mariluz Araínga, Muhammad R. Haque, Christine M. Fennessey, Rachel A Caddell +14 more

Deviations in RSV epidemiological patterns and population structures in the United States following the COVID-19 pandemic

Nature Communications(2024)10.1038/s41467-024-47757-9

N/A

0DataRank · unranked

88 citations

Lacy M. Simons, Taylor J. Dean, Francesca Agnes, Anna Pawlowski, Arghavan Alisoltani +6 more

Distinctive evolution of alveolar T cell responses is associated with clinical outcomes in unvaccinated patients with SARS-CoV-2 pneumonia

Nature Immunology(2024)10.1038/s41590-024-01914-w

N/A

0DataRank · unranked

17 citations

Ziyou Ren, Karolina J. Senkow, Rogan A. Grant, Catherine A. Gao, Elizabeth S. Malsin +91 more

Activity and inhibition of the SARS-CoV-2 Omicron nsp13 R392C variant using RNA duplex unwinding assays

SLAS DISCOVERY(2024)10.1016/j.slasd.2024.01.006

N/A

0DataRank · unranked

9 citations

Margarita Rzhetskaya, Ted Ling-Hu, Ramón Lorenzo-Redondo, Kelly E. R. Bachta, Karla J. F. Satchell +2 more

Genomic characterization of SARS-CoV-2 in Guinea, West Africa

PLoS ONE(2024)10.1371/journal.pone.0299082

N/A

0DataRank · unranked

8 citations

Josué Togo, Lacy M. Simons, Souleymane Diallo, Mohamed Lamine Magassouba, Mamadou Keita +9 more

Release of P-TEFb from the Super Elongation Complex promotes HIV-1 latency reversal

PLoS Pathogens(2024)10.1371/journal.ppat.1012083

N/A

0DataRank · unranked

5 citations

Shimaa Soliman, Miriam Walter, Lacy M. Simons, Daphne Cornish, Simone De Fabritiis +7 more

Integration of individualized and population-level molecular epidemiology data to model COVID-19 outcomes

Cell Reports Medicine(2024)10.1016/j.xcrm.2023.101361

N/A

0DataRank · unranked

2 citations

Lacy M. Simons, Taylor J. Dean, Estefany Rios-Guzman, Matthew Caputo, Arghavan Alisoltani +12 more

COVID-19 outbreak and genomic investigation in an inpatient behavioral health unit

Antimicrobial Stewardship & Healthcare Epidemiology(2024)10.1017/ash.2024.40

N/A

0DataRank · unranked

1 citations

Alina G. Stancovici, Lacy M. Simons, Grace Barajas, K. Glenn, Rachel Palmieri Weber +5 more

Inflammatory responses revealed through HIV infection of microglia-containing cerebral organoids

Journal of Neuroinflammation(2025)10.1186/s12974-025-03353-2

N/A

0DataRank · unranked

21 citations

Janet Zayas, Michelle K. Ash, Anjelica F. Reyes, Tanner Shull, Stéphanie Gambut +7 more

The ability of SAMHD1-deficient monocytes to trigger the Type I IFN response depends on cGAS and mitochondrial DNA

Journal of Biological Chemistry(2025)10.1016/j.jbc.2025.110430

N/A

0DataRank · unranked

5 citations

Isabelle K. Vila, Charlotte Luchsinger, Cinzia Bertelli, Moritz Schüssler, Clara Taffoni +13 more

The impact of remdesivir on SARS-CoV-2 evolution in vivo

JCI Insight(2025)10.1172/jci.insight.182376

N/A

0DataRank · unranked

6 citations

Lacy M. Simons, Estefany Rios-Guzman, Alexandre Machado de Sant’Anna Carvalho, Maria Francesca Reyes Agnes, Arghavan Alisoltani +4 more

Scheffersomyces spartinae Fungemia among Pediatric Patients, Pakistan, 2020–2024

Emerging infectious diseases(2025)10.3201/eid3108.241604

N/A

0DataRank · unranked

1 citations

Joveria Farooqi, Lacy M. Simons, Judd F. Hultquist, Ramón Lorenzo-Redondo, Charlesnika T. Evans +15 more

Large language models accurately identify immunosuppression in intensive care unit patients

Journal of the American Medical Informatics Association(2025)10.1093/jamia/ocaf141

N/A

0DataRank · unranked

1 citations

Mengjia Kang, M. Bak, Steven Tran, Anna Pawlowski, Prasanth Nannapaneni +87 more

HIV-1 Infection Regulates Gene Expression by Altering Alternative Polyadenylation Through CPSF6 and CPSF5 Delocalization

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.07.669137

N/A

0DataRank · unranked

0 citations

Aihua Dai, Hari Krishna Yalamanchili, Aiswarya Balakrishnan, Kai-Lieh Huang, Cinzia Bertelli +5 more

HIV-1 infection regulates gene expression by altering alternative polyadenylation correlated with CPSF6 and CPSF5 redistribution

mBio(2025)10.1128/mbio.02865-25

N/A

0DataRank · unranked

0 citations

Aihua Dai, Hari Krishna Yalamanchili, Aiswarya Balakrishnan, Kai-Lieh Huang, Cinzia Bertelli +5 more

Anatomic Distribution of Intravenously Injected IgG Takes Approximately 1 Week to Achieve Stratum Corneum Saturation in Vaginal Tissues

The Journal of Immunology(2021)10.4049/jimmunol.2100253

N/A

0DataRank · unranked

10 citations

Jeffrey R. Schneider, Patrick Madden, Ramón Lorenzo-Redondo, Mariluz Araínga, Amarendra Pegu +7 more

Development of an In Vivo Probe to Track SARS-CoV-2 Infection in Rhesus Macaques

Frontiers in Immunology(2021)10.3389/fimmu.2021.810047

N/A

0DataRank · unranked

8 citations

Muhammad Arif, Mark E. Becker, Michael D. McRaven, Ann M. Carias, Ramón Lorenzo-Redondo +17 more

Longitudinal analysis of SARS-CoV-2 vaccine breakthrough infections reveal limited infectious virus shedding and restricted tissue distribution

medRxiv(2021)10.1101/2021.08.30.21262701

N/A

0DataRank · unranked

38 citations

Pamela P. Martinez, Rebecca L. Smith, Laura Gibson, Chad J. Achenbach, Sally M. McFall +38 more

Coincident rapid expansion of two SARS-CoV-2 lineages with enhanced infectivity in Nigeria

medRxiv(2021)10.1101/2021.04.09.21255206

N/A

0DataRank · unranked

37 citations

Lacy M. Simons, O. M. Adewumi, Adeola Fowotade, Ewean Chukwuma Omoruyi, Johnson Adekunle Adeniji +11 more

Severity of Illness Caused by Severe Acute Respiratory Syndrome Coronavirus 2 Variants of Concern in Children: A Single-Center Retrospective Cohort Study

medRxiv(2021)10.1101/2021.10.23.21265402

N/A

0DataRank · unranked

14 citations

Ramón Lorenzo-Redondo, Megan E. Reyna, Lacy M. Simons, Judd F. Hultquist, Ami B. Patel +10 more

Assessment and Modeling of COVID-19 Outcomes in a Longitudinal Cohort of Hospitalized Adults

medRxiv(2021)10.1101/2021.07.02.21259665

N/A

0DataRank · unranked

0 citations

Ramón Lorenzo-Redondo, Meg Gibson, Sarah L. Kinch, Jacob P. Vandervaart, Nina L. Reiser +13 more

Longitudinal Analysis of SARS-CoV-2 Vaccine Breakthrough Infections Reveals Limited Infectious Virus Shedding and Restricted Tissue Distribution

Open Forum Infectious Diseases(2022)10.1093/ofid/ofac192

N/A

0DataRank · unranked

65 citations

Pamela P. Martinez, Rebecca L. Smith, Laura Gibson, Chad J. Achenbach, Sally M. McFall +38 more