Kai Wang

Also affiliated with University of Pennsylvania

Biochemistry, Genetics and Molecular BiologyEngineering

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile

3.3Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Phen2Gene: rapid phenotype-driven gene prioritization for rare diseases

NAR Genomics and Bioinformatics(2020)10.1093/nargab/lqaa032

Top 7%

3.3DataRank

Top 7%87 citations

James M. Havrilla, Fang Li, Ying Chen, Jacqueline Peng, Cong Liu +8 more

Papers

Driven by 41 papers — median percentile 93. Top paper: “Phen2Gene: rapid phenotype-driven gene prioritization for rare diseases”.

Phen2Gene: rapid phenotype-driven gene prioritization for rare diseases

NAR Genomics and Bioinformatics(2020)10.1093/nargab/lqaa032

Top 7%

3.3DataRank

Top 7%87 citations

James M. Havrilla, Fang Li, Ying Chen, Jacqueline Peng, Cong Liu +8 more

Detection of base analogs incorporated during DNA replication by nanopore sequencing

Nucleic Acids Research(2020)10.1093/nar/gkaa517

N/A

0DataRank · unranked

72 citations

Qian Liu, Kai Wang, Dieter Egli, Daniela Georgieva

LongGF: computational algorithm and software tool for fast and accurate detection of gene fusions by long-read transcriptome sequencing

BMC Genomics(2020)10.1186/s12864-020-07207-4

N/A

0DataRank · unranked

55 citations

Yu Hu, Andres Stucky, Fang Li, Jiang F. Zhong, Kai Wang +1 more

Detecting differential alternative splicing events in scRNA-seq with or without Unique Molecular Identifiers

PLoS Computational Biology(2020)10.1371/journal.pcbi.1007925

N/A

0DataRank · unranked

29 citations

Kai Wang, Mingyao Li, Yu Hu

Genome-wide detection of short tandem repeat expansions by long-read sequencing

BMC Bioinformatics(2020)10.1186/s12859-020-03876-w

N/A

0DataRank · unranked

26 citations

Yao Tong, Kai Wang, Qian Liu

Implications of Error-Prone Long-Read Whole-Genome Shotgun Sequencing on Characterizing Reference Microbiomes

iScience(2020)10.1016/j.isci.2020.101223

N/A

0DataRank · unranked

23 citations

Li Fang, Christopher Nicholson, Kai Wang, Yu Hu

Cell Type-Specific Annotation and Fine Mapping of Variants Associated With Brain Disorders

Frontiers in Genetics(2020)10.3389/fgene.2020.575928

N/A

0DataRank · unranked

4 citations

Iuliana Ionita‐Laza, Kai Wang, Abolfazl Doostparast Torshizi

LIQA: Long-read Isoform Quantification and Analysis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.09.289793

N/A

0DataRank · unranked

5 citations

Fang Li, Xuelian Chen, Jiang F. Zhong, Mingyao Li, Kai Wang +1 more

Implications of error-prone long-read whole-genome shotgun sequencing on characterizing reference microbiomes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.05.978866

N/A

0DataRank · unranked

4 citations

Li Fang, Christopher Nicholson, Kai Wang, Yu Hu

A computational method for direct imputation of cell type-specific expression profiles and cellular compositions from bulk-tissue RNA-Seq in brain disorders

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.28.121483

N/A

0DataRank · unranked

1 citations

Jubao Duan, Kai Wang, Abolfazl Doostparast Torshizi

NanoCaller for accurate detection of SNPs and indels in difficult-to-map regions from long-read sequencing by haplotype-aware deep neural networks

Genome biology(2021)10.1186/s13059-021-02472-2

N/A

0DataRank · unranked

94 citations

Qian Liu, Fang Li, Kai Wang, Mian Umair Ahsan

LIQA: long-read isoform quantification and analysis

Genome biology(2021)10.1186/s13059-021-02399-8

N/A

0DataRank · unranked

89 citations

Fang Li, Xuelian Chen, Jiang F. Zhong, Mingyao Li, Kai Wang +1 more

A computational method for direct imputation of cell type-specific expression profiles and cellular compositions from bulk-tissue RNA-Seq in brain disorders

NAR Genomics and Bioinformatics(2021)10.1093/nargab/lqab056

N/A

0DataRank · unranked

7 citations

Jubao Duan, Kai Wang, Abolfazl Doostparast Torshizi

DeepRepeat: direct quantification of short tandem repeats on signal data from nanopore sequencing

Genome biology(2022)10.1186/s13059-022-02670-6

N/A

0DataRank · unranked

63 citations

Qian Liu, Alex Mas Monteys, Pedro Gonzalez‐Alegre, Beverly L. Davidson, Kai Wang +1 more

Haplotyping SNPs for allele-specific gene editing of the expanded huntingtin allele using long-read sequencing

Human Genetics and Genomics Advances(2022)10.1016/j.xhgg.2022.100146

N/A

0DataRank · unranked

15 citations

Alex Mas Monteys, Alexandra Dürr, Megan S. Keiser, Congsheng Cheng, Akhil Harapanahalli +4 more

Epigenetic dysregulation in meningiomas

Neuro-Oncology Advances(2022)10.1093/noajnl/vdac084

N/A

0DataRank · unranked

7 citations

Ivo S. Muskens, Ben A. Strickland, Oscar Aurelio, Vahan Martirosian, Joseph L. Wiemels +6 more

Expediting knowledge acquisition by a web framework for Knowledge Graph Exploration and Visualization (KGEV): case studies on COVID-19 and Human Phenotype Ontology

BMC Medical Informatics and Decision Making(2022)10.1186/s12911-022-01848-z

N/A

0DataRank · unranked

14 citations

David S. Xu, Ryan Lee, Siwei Xu, Yunyun Zhou, Kai Wang +1 more

Tissue-wide cell-specific proteogenomic modeling reveals novel candidate risk genes in autism spectrum disorders

npj Systems Biology and Applications(2022)10.1038/s41540-022-00243-8

N/A

0DataRank · unranked

11 citations

Kai Wang, Abolfazl Doostparast Torshizi

A survey of algorithms for the detection of genomic structural variants from long-read sequencing data

Nature Methods(2023)10.1038/s41592-023-01932-w

N/A

0DataRank · unranked

84 citations

Qian Liu, Jonathan E. Perdomo, Fang Li, Kai Wang, Mian Umair Ahsan

Enhancing phenotype recognition in clinical notes using large language models: PhenoBCBERT and PhenoGPT

Patterns(2023)10.1016/j.patter.2023.100887

N/A

0DataRank · unranked

68 citations

Cong Liu, Wendy Deng, Wu Da, Chunhua Weng, Yunyun Zhou +2 more

Deciphering “the language of nature”: A transformer-based language model for deleterious mutations in proteins

The Innovation(2023)10.1016/j.xinn.2023.100487

N/A

0DataRank · unranked

37 citations

Fang Li, Kai Wang, Theodore T. Jiang

PhenoSV: interpretable phenotype-aware model for the prioritization of genes affected by structural variants

Nature Communications(2023)10.1038/s41467-023-43651-y

N/A

0DataRank · unranked

16 citations

Quan Li, Luigi Marchionni, Kai Wang, Zhuoran Xu

Assessing the Expression of Long INterspersed Elements (LINEs) via Long-Read Sequencing in Diverse Human Tissues and Cell Lines

Genes(2023)10.3390/genes14101893

N/A

0DataRank · unranked

11 citations

Mingyi Xia, Mian Umair Ahsan, Jinchuan Xing, Kai Wang, Karleena Rybacki

Phenotype-Driven Molecular Genetic Test Recommendation for Diagnosing Pediatric Rare Disorders

Research Square(2023)10.21203/rs.3.rs-3593490/v1

N/A

0DataRank · unranked

3 citations

Fangyi Chen, Priyanka Ahimaz, Kai Wang, Wendy K. Chung, Casey Ta +2 more

A signal processing and deep learning framework for methylation detection using Oxford Nanopore sequencing

Nature Communications(2024)10.1038/s41467-024-45778-y

N/A

0DataRank · unranked

109 citations

Anagha Gouru, Joe Chan, Wanding Zhou, Kai Wang, Mian Umair Ahsan

Phenotype driven molecular genetic test recommendation for diagnosing pediatric rare disorders

npj Digital Medicine(2024)10.1038/s41746-024-01331-1

N/A

0DataRank · unranked

11 citations

Priyanka Ahimaz, Quan M. Nguyen, Rachel Lewis, Wendy K. Chung, Casey Ta +7 more

Genetic variant classification by predicted protein structure: A case study on IRF6

Computational and Structural Biotechnology Journal(2024)10.1016/j.csbj.2024.01.019

N/A

0DataRank · unranked

10 citations

Peng Wang, Eric C. Liao, Kai Wang, Hemma Murali

Exploring the reversal curse and other deductive logical reasoning in BERT and GPT-based large language models

Patterns(2024)10.1016/j.patter.2024.101030

N/A

0DataRank · unranked

10 citations

Jingye Yang, Kai Wang, Wu Da

Functional analysis of ESRP1/2 gene variants and CTNND1 isoforms in orofacial cleft pathogenesis

Communications Biology(2024)10.1038/s42003-024-06715-3

N/A

0DataRank · unranked

10 citations

Claudio Macias-Treviño, Jason W. Mitchell, Hemma Murali, Casey Tsimbal, Eileen Dalessandro +12 more

SCOTCH: isoform-level characterization of gene expression through long-read single-cell RNA sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.29.590597

N/A

0DataRank · unranked

5 citations

Hui‐Qi Qu, Joe Chan, Shizhuo Mu, Charlly Kao, Håkon Håkonarson +2 more

A comparative evaluation of computational models for RNA modification detection using nanopore sequencing with RNA004 chemistry

Briefings in Bioinformatics(2025)10.1093/bib/bbaf404

N/A

0DataRank · unranked

26 citations

Mian Umair Ahsan, Joe Chan, Wen Bo Meng, Shou‐Jiang Gao, Yufei Huang +2 more

Consistent performance of large language models in rare disease diagnosis across ten languages and 4917 cases

EBioMedicine(2025)10.1016/j.ebiom.2025.105957

N/A

0DataRank · unranked

8 citations

J. Harry Caufield, Yasemin Bridges, Nicolas A Matentzoglu, Michael Gargano, Mario Cazalla +25 more

LongReadSum: A fast and flexible quality control and signal summarization tool for long-read sequencing data

Computational and Structural Biotechnology Journal(2025)10.1016/j.csbj.2025.01.019

N/A

0DataRank · unranked

7 citations

Mian Umair Ahsan, Qian Liu, Fang Li, Kai Wang, Jonathan Perdomo

NRCAM variant defined by microexon skipping is a targetable cell surface proteoform in high-grade gliomas

Cell Reports(2025)10.1016/j.celrep.2025.116099

N/A

0DataRank · unranked

5 citations

Ammar S. Naqvi, Makenna Higgins, Jia‐Geng Liu, Kyra Harvey, Julien Jarroux +25 more

Combining panel-based and whole-transcriptome-based gene fusion detection by long-read sequencing

Cell Reports Methods(2025)10.1016/j.crmeth.2025.101111

N/A

0DataRank · unranked

1 citations

Xu Feng, Hannah M. Deutsch, Mian Umair Ahsan, Joe Chan, Zizhuo Liang +4 more

Genetic requirement for Esrp1 and Esrp2 in vertebrate pituitary morphogenesis

Development(2025)10.1242/dev.204636

N/A

0DataRank · unranked

1 citations

Sogand Schäfer, Ariella S. Richman, Peng Wang, Mohamed Jawed Ahsan, Lisa Tsay +3 more

A Comparative Evaluation of Computational Models for RNA modification detection using Nanopore sequencing with RNA004 Chemistry

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.02.03.636352

N/A

0DataRank · unranked

6 citations

Mian Umair Ahsan, Joe Chan, Wen Bo Meng, Shou‐Jiang Gao, Yufei Huang +2 more

Genetic requirement for Esrp1/2 in vertebrate pituitary morphogenesis

medRxiv(2025)10.1101/2025.04.02.25325077

N/A

0DataRank · unranked

0 citations

Sogand Schäfer, Ariella S. Richman, Lisa Tsay, Peng Wang, Mohamed Jawed Ahsan +3 more

Noncoding de novo mutations in SCN2A are associated with autism spectrum disorders

iScience(2025)10.1016/j.isci.2025.113258

N/A

0DataRank · unranked

0 citations

Mian Umair Ahsan, Kai Wang, Yuan Zhang

Detection and characterization of neonatal cytomegalovirus through nanopore sequencing using flongle flow cells: Pilot study in Philadelphia, Pennsylvania

Journal of Virological Methods(2025)10.1016/j.jviromet.2025.115245

N/A

0DataRank · unranked

0 citations

Joe Chan, Gabrielle C Galchen, Mian Umair Ahsan, Robert H. Gilman, Kenneth P. Smith +3 more

PhenoGPT2: A Multimodal Fine-tuned Large Language Models for Phenotype Extraction and Normalization from Clinical Text and Facial Images

(2025)10.1145/3765612.3767763

N/A

0DataRank · unranked

0 citations

Mian Umair Ahsan, Zhanliang Wang, Kai Wang, Quan Minh Nguyen

Kai Wang

Indexed papers

Top data-sharing exemplar

Papers