Tujin Shi

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 25 papers. Top paper: “Circulating ACE2-expressing extracellular vesicles block broad strains of SARS-CoV-2”.

Circulating ACE2-expressing extracellular vesicles block broad strains of SARS-CoV-2

Nature Communications(2022)10.1038/s41467-021-27893-2

N/A

4.1DataRank · unranked

170 citations

Andrew D. Hoffmann, Nurmaa K. Dashzeveg, Kathleen M. McAndrews, Paul J. Mehl, Daphne Cornish +31 more

Proteogenomic insights suggest druggable pathways in endometrial carcinoma

Cancer Cell(2023)10.1016/j.ccell.2023.07.007

N/A

1.2DataRank · unranked

54 citations

Lizabeth Katsnelson, Marina A. Gritsenko, Yingwei Hu, Boris Reva, Runyu Hong +95 more

Nutritional markers and proteome in patients undergoing treatment for pulmonary tuberculosis differ by geographic region

PLoS ONE(2021)10.1371/journal.pone.0250586

N/A

0.508DataRank · unranked

12 citations

Komal Kedia, Jason Wendler, Aaron Wright, Paul Piehowski, Marina A. Gritsenko +9 more

Long-read RNA-seq atlas of novel microglia isoforms elucidates disease-associated genetic regulation of splicing

medRxiv(2023)10.1101/2023.12.01.23299073

N/A

0.269DataRank · unranked

5 citations

Erica Brophy, Roman Kosoy, Biao Zeng, Elena Coccia, Daniele Mattei +29 more

Computational ranking-assisted identification of Plexin-B2 in homotypic and heterotypic clustering of circulating tumor cells in breast cancer metastasis

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.10.536233

N/A

0.241DataRank · unranked

4 citations

Nurmaa K. Dashzeveg, Yuzhi Jia, Kibria Golam, Tong Zhang, Andrew R. Hoffman +20 more

A streamlined tandem tip-based workflow for sensitive nanoscale phosphoproteomics

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.12.488038

N/A

0DataRank · unranked

2 citations

Yi-Ting Wang, Chuan‐Chih Hsu, Reta Birhanu Kitata, Rosalie Chu, Marija Veličković +12 more

Understanding of Bacterial Lignin Extracellular Degradation Mechanisms by Pseudomonas putida KT2440 via Secretomic Analysis

Research Square(2022)10.21203/rs.3.rs-1958122/v1

N/A

0DataRank · unranked

2 citations

Bo Peng, Reta Birhanu Kitata, Carrie Nicora, Karl Weitz, Yunqiao Pu +5 more

Phosphorylation barcode ensembles encoded by biased CXCR3 agonists direct non‐redundant chemokine signaling

The FASEB Journal(2022)10.1096/fasebj.2022.36.s1.0r486

N/A

0DataRank · unranked

0 citations

Jeffrey S. Smith, Tujin Shi, Tomasz Maciej Stępniewski, Christopher Cole Honeycutt, Noelia Boldizsar +12 more

A streamlined tandem tip-based workflow for sensitive nanoscale phosphoproteomics

Communications Biology(2023)10.1038/s42003-022-04400-x

N/A

0DataRank · unranked

47 citations

Yi-Ting Wang, Chuan‐Chih Hsu, Reta Birhanu Kitata, Rosalie Chu, Marija Veličković +12 more

Phosphorylation barcodes direct biased chemokine signaling at CXCR3

Cell chemical biology(2023)10.1016/j.chembiol.2023.03.006

N/A

0DataRank · unranked

35 citations

Jeffrey S. Smith, Tujin Shi, Tomasz Maciej Stępniewski, Chia‐Feng Tsai, Christopher Cole Honeycutt +19 more

In-Depth Proteome Profiling of Small Extracellular Vesicles Isolated from Cancer Cell Lines and Patient Serum

Journal of Proteome Research(2023)10.1021/acs.jproteome.3c00614

N/A

0DataRank · unranked

10 citations

Reta Birhanu Kitata, Jie Zhang, Yi-Ting Wang, Matthew Gaffrey, Tao Liu +8 more

Targeted Quantification of Protein Phosphorylation and Its Contributions towards Mathematical Modeling of Signaling Pathways

Molecules(2023)10.3390/molecules28031143

N/A

0DataRank · unranked

11 citations

Song Feng, Tujin Shi, Jon Jacobs, H Wiley, Weijun Qian +1 more

Targeted Mass Spectrometry Assays for Specific Quantification of Urinary proPSA Isoforms

Journal of Proteome Research(2023)10.1021/acs.jproteome.2c00745

N/A

0DataRank · unranked

2 citations

Lisa Hu, Tai‐Tu Lin, Carrie Nicora, Thomas Fillmore, Song Nie +7 more

Robust collection and processing for label-free single voxel proteomics

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.14.553333

N/A

0DataRank · unranked

0 citations

Marija Veličković, Zhangyang Xu, Rui Zhao, David Scholten, Rosalie Chu +11 more

Robust Surfactant-Assisted One-Pot Sample Preparation for Label-Free Single-Cell and Nanoscale Proteomics

Methods in molecular biology(2024)10.1007/978-1-0716-3934-4_8

N/A

0DataRank · unranked

0 citations

Rongge Zou, Nina Horn, Reta Birhanu Kitata, Tujin Shi, Zhangyang Xu

Robust collection and processing for label-free single voxel proteomics

Nature Communications(2025)10.1038/s41467-024-54643-x

N/A

0DataRank · unranked

10 citations

Marija Veličković, Zhangyang Xu, Rui Zhao, David Scholten, Rosalie Chu +15 more

Computational ranking identifies Plexin-B2 in circulating tumor cell clustering with monocytes in breast cancer metastasis

Nature Communications(2025)10.1038/s41467-025-62862-z

N/A

0DataRank · unranked

8 citations

Nurmaa K. Dashzeveg, Fangjia Tong, Yuzhi Jia, Lamiaa El-Shennawy, Tong Zhang +27 more

The evolution of analytical techniques for multiplex analysis of protein biomarkers

Expert Review of Proteomics(2025)10.1080/14789450.2025.2529185

N/A

0DataRank · unranked

2 citations

David Ross Hall, Lorenz Nierves, Tai‐Tu Lin, Reta Birhanu Kitata, Tujin Shi +2 more

An Antibody Cocktail-Based Immunoaffinity-LC-MS Method Enabled Ultra-Sensitive and Robust Quantification of Circulating Proinsulin Proteoforms and C-peptide

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.02.657397

N/A

0DataRank · unranked

0 citations

Wang Cao, Ming Zhang, Tai-Tu Lin, Gabriela S. F. Monaco, Lorenz Nierves +8 more

Proteomic Analysis of Exosomes for Discovery of Protein Biomarkers for Prostate and Bladder Cancer

Cancers(2020)10.3390/cancers12092335

N/A

0DataRank · unranked

88 citations

Tujin Shi, Sudhir Srivastava, Jacob Kagan, Tao Liu, Karin Rodland +1 more

Improved surfactant-assisted one-pot sample preparation for robust convenient single cell proteomics

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.64898/2025.12.26.696642

N/A

0DataRank · unranked

0 citations

Zhangyang Xu, Nadia Bayou, Rui Zhao, William B Christler, Matthew Gaffrey +9 more

Transcriptomic and proteomic signatures of stemness and differentiation in the colon crypt

Communications Biology(2020)10.1038/s42003-020-01181-z

N/A

0DataRank · unranked

56 citations

Jessica L. Flesher, Jennifer Bates, Chia‐Feng Tsai, Kendall Martin, Rui Zhao +8 more

Comprehensive Detection of Single Amino Acid Variants and Evaluation of Their Deleterious Potential in a PANC-1 Cell Line

Journal of Proteome Research(2020)10.1021/acs.jproteome.9b00840

N/A

0DataRank · unranked

16 citations

Jianhui Zhu, Paul M. Stemmer, Liangliang Sun, Zhichang Yang, Kendall Schultz +8 more

Surfactant-assisted one-pot sample preparation for label-free single-cell proteomics

Communications Biology(2021)10.1038/s42003-021-01797-9

N/A

0DataRank · unranked

132 citations

Pengfei Zhang, David Scholten, Kendall Martin, Yi-Ting Wang, Rui Zhao +23 more

Understanding of bacterial lignin extracellular degradation mechanisms by Pseudomonas putida KT2440 via secretomic analysis

Biotechnology for Biofuels and Bioproducts(2022)10.1186/s13068-022-02214-x

N/A

0DataRank · unranked

43 citations

Bo Peng, Reta Birhanu Kitata, Carrie Nicora, Karl Weitz, Yunqiao Pu +5 more