Glen M. Hocky

Also affiliated with Simons Foundation, New York University

Biochemistry, Genetics and Molecular BiologyPhysics and AstronomyMaterials ScienceMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 31 papers. Top paper: “Actin crosslinker competition and sorting drive emergent GUV size-dependent actin network architecture”.

Actin crosslinker competition and sorting drive emergent GUV size-dependent actin network architecture

Communications Biology(2021)10.1038/s42003-021-02653-6

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0DataRank · unranked

54 citations

Steven A. Redford, Chatipat Lorpaiboon, Alessandro Groaz, Hossein Moghimianavval, Thomas Litschel +5 more

Structural basis of fast- and slow-severing actin–cofilactin boundaries

Journal of Biological Chemistry(2021)10.1016/j.jbc.2021.100337

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0DataRank · unranked

23 citations

Charles V. Sindelar, Wenxiang Cao, Gregory A. Voth, Enrique M. De La Cruz, Glen M. Hocky

Structure of Arp2/3 complex at a branched actin filament junction resolved by single-particle cryo-electron microscopy

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2202723119

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0DataRank · unranked

69 citations

Heidy Y. Narvaez‐Ortiz, Yuvraj Singh, Glen M. Hocky, Saikat Chowdhury, Brad J. Nolen +1 more

Natural language processing models that automate programming will transform chemistry research and teaching

Digital Discovery(2022)10.1039/d1dd00009h

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0DataRank · unranked

64 citations

Andrew Dickson White, Glen M. Hocky

Assessing models of force-dependent unbinding rates via infrequent metadynamics

The Journal of Chemical Physics(2022)10.1063/5.0081078

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0DataRank · unranked

20 citations

Glen M. Hocky, Willmor J. Peña Ccoa

Do large language models know chemistry?

ChemRxiv(2022)10.26434/chemrxiv-2022-3md3n

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0DataRank · unranked

9 citations

Glen M. Hocky, Heta A. Gandhi, Mehrad Ansari, Sam Cox, Geemi P. Wellawatte +6 more

Assessment of chemistry knowledge in large language models that generate code

ChemRxiv(2022)10.26434/chemrxiv-2022-3md3n-v2

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0DataRank · unranked

6 citations

Glen M. Hocky, Heta A. Gandhi, Mehrad Ansari, Sam Cox, Geemi P. Wellawatte +6 more

Neural potentials of proteins extrapolate beyond training data

ChemRxiv(2022)10.26434/chemrxiv-2022-41f04

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0DataRank · unranked

2 citations

Glen M. Hocky, Andrew Dickson White, Geemi P. Wellawatte

Assessment of chemistry knowledge in large language models that generate code

Digital Discovery(2023)10.1039/d2dd00087c

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0DataRank · unranked

106 citations

Glen M. Hocky, Heta A. Gandhi, Mehrad Ansari, Sam Cox, Geemi P. Wellawatte +6 more

Neural potentials of proteins extrapolate beyond training data

The Journal of Chemical Physics(2023)10.1063/5.0147240

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0DataRank · unranked

10 citations

Glen M. Hocky, Andrew Dickson White, Geemi P. Wellawatte

A coarse-grained simulation model for colloidal self-assembly via explicit mobile binders

Soft Matter(2023)10.1039/d3sm00196b

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0DataRank · unranked

17 citations

C. C. Chang, Angus McMullen, Daniela Puchall, Jasna Brujić, Glen M. Hocky +1 more

Molecular dynamics simulations support a multistep pathway for activation of branched actin filament nucleation by Arp2/3 complex

Journal of Biological Chemistry(2023)10.1016/j.jbc.2023.105169

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0DataRank · unranked

8 citations

Glen M. Hocky, Brad J. Nolen, Yuvraj Singh

Neural potentials of proteins extrapolate beyond training data

ChemRxiv(2023)10.26434/chemrxiv-2022-41f04-v2

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0DataRank · unranked

2 citations

Glen M. Hocky, Andrew Dickson White, Geemi P. Wellawatte

Neural potentials of proteins extrapolate beyond training data

ChemRxiv(2023)10.26434/chemrxiv-2022-41f04-v3

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0DataRank · unranked

2 citations

Glen M. Hocky, Andrew Dickson White, Geemi P. Wellawatte

Reaction Coordinates for Conformational Transitions using Linear Discriminant Analysis on Positions

arXiv (Cornell University)(2023)10.48550/arxiv.2301.03479

N/A

0DataRank · unranked

0 citations

Martin McCullagh, Glen M. Hocky, Subarna Sasmal

Computing equilibrium free energies through a nonequilibrium quench

arXiv (Cornell University)(2023)10.48550/arxiv.2309.05122

N/A

0DataRank · unranked

0 citations

Grant M. Rotskoff, Eric Vanden‐Eijnden, Glen M. Hocky, Kangxin Liu

Polysome collapse and RNA condensation fluidize the cytoplasm

Molecular Cell(2024)10.1016/j.molcel.2024.06.024

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0DataRank · unranked

35 citations

Tong Shu, Tiewei Liu, Marie-Christin Spindler, Julia Mahamid, Glen M. Hocky +3 more

Enabling three-dimensional real-space analysis of ionic colloidal crystallization

Nature Materials(2024)10.1038/s41563-024-01917-w

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0DataRank · unranked

22 citations

Adam W. Hauser, Sanjib Paul, Glen M. Hocky, Stefano Sacanna, Shihao Zang

Quantifying Unbiased Conformational Ensembles from Biased Simulations Using ShapeGMM

Journal of Chemical Theory and Computation(2024)10.1021/acs.jctc.4c00223

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0DataRank · unranked

14 citations

Triasha Pal, Glen M. Hocky, Martin McCullagh, Subarna Sasmal

Mesoscale molecular assembly is favored by the active, crowded cytoplasm

PRX Life(2024)10.1103/prxlife.2.033001

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0DataRank · unranked

13 citations

Gaurav Mitra, Jonathan Alberts, Matheus P. Viana, Emmanuel D. Levy, Glen M. Hocky +2 more

Good Rates From Bad Coordinates: The Exponential Average Time-dependent Rate Approach

Journal of Chemical Theory and Computation(2024)10.1021/acs.jctc.4c00425

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0DataRank · unranked

10 citations

Subarna Sasmal, Pilar Cossio, Glen M. Hocky, Nicodemo Mazzaferro

Arp2/3 complex- and formin-mediated actin cytoskeleton networks facilitate actin binding protein sorting in fission yeast

European Journal of Cell Biology(2024)10.1016/j.ejcb.2024.151404

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0DataRank · unranked

8 citations

Glen M. Hocky, Cristian Suarez, David R. Kovar, Kaitlin E. Homa

Molecular simulation approaches to probing the effects of mechanical forces in the actin cytoskeleton

Cytoskeleton(2024)10.1002/cm.21837

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0DataRank · unranked

7 citations

Willmor J. Peña Ccoa, Glen M. Hocky, Fatemah Mukadum

Computing equilibrium free energies through a nonequilibrium quench

The Journal of Chemical Physics(2024)10.1063/5.0176700

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0DataRank · unranked

1 citations

Grant M. Rotskoff, Eric Vanden‐Eijnden, Glen M. Hocky, Kangxin Liu

β-barrel proteins dictate the effect of core oligosaccharide composition on outer membrane mechanics

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.02.610904

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0DataRank · unranked

2 citations

Anthony Amador, Tahj Starr, Glen M. Hocky, Enrique Rojas, Dylan Fitzmaurice

Direct observation and control of non-classical crystallization pathways in binary colloidal systems

Nature Communications(2025)10.1038/s41467-025-58959-0

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0DataRank · unranked

18 citations

Sanjib Paul, Cheuk Wai Leung, Michael S. Chen, Theodore Hueckel, Glen M. Hocky +2 more

β-Barrel proteins dictate the effect of core oligosaccharide composition on outer membrane mechanics

Biophysical Journal(2025)10.1016/j.bpj.2025.01.017

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0DataRank · unranked

2 citations

Anthony Amador, Tahj Starr, Glen M. Hocky, Enrique Rojas, Dylan Fitzmaurice

A direct computational assessment of vinculin–actin unbinding kinetics reveals catch-bonding behavior

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2425982122

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0DataRank · unranked

1 citations

Fatemah Mukadum, Aubin Ramon, Guillaume Stirnemann, Glen M. Hocky, Willmor J. Peña Ccoa

Peptidoglycan turnover promotes active transport of protein through the bacterial cell wall

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.12.675941

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0DataRank · unranked

1 citations

Kunal Samantaray, Dan Shafir, Kaya Jain, Glen M. Hocky, Sven van Teeffelen +2 more

Using Time Dependent Rate Analysis to Evaluate the Quality of Machine Learned Reaction Coordinates for Biasing and Computing Kinetics

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.03.662600

N/A

0DataRank · unranked

0 citations

Suemin Lee, Pilar Cossio, Pratyush Tiwary, Glen M. Hocky, Nicodemo Mazzaferro

Tutorial on quantifying and sampling biomolecular ensembles with ShapeGMM

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.06.680711

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0DataRank · unranked

0 citations

Martin McCullagh, Glen M. Hocky, Subarna Sasmal