🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Thomas J. Begley

Albany State University

ORCID: 0000-0002-5641-7644

Also affiliated with University at Albany, State University of New York, Abterra Biosciences (United States), Albany Research Institute

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 17 papers. Top paper: “The epitranscriptomic writer ALKBH8 drives tolerance and protects mouse lungs from the environmental pollutant naphthalene”.

The epitranscriptomic writer ALKBH8 drives tolerance and protects mouse lungs from the environmental pollutant naphthalene

Epigenetics(2020)10.1080/15592294.2020.1750213

N/A

0DataRank · unranked

24 citations

Nataliia Kovalchuk, Lei Yin, Lauren Endres, Sara Evke, Steven Nevins +8 more

Loss of Elongator- and KEOPS-Dependent tRNA Modifications Leads to Severe Growth Phenotypes and Protein Aggregation in Yeast

Biomolecules(2020)10.3390/biom10020322

N/A

0DataRank · unranked

27 citations

Roland Klassen, Nick Davis, Akif Ciftci, Jo Marie Bacusmo, Maria Martinelli +6 more

Loss of Elongator- and KEOPS-Dependent tRNA Modifications Leads to Severe Growth Phenotypes and Protein Aggregation in Yeast

Preprints.org(2020)10.20944/preprints202001.0188.v1

N/A

0DataRank · unranked

5 citations

Roland Klassen, Nick Davis, Akif Ciftci, Jo Marie Bacusmo, Maria Marinelli +6 more

Detecting the epitranscriptome

Wiley Interdisciplinary Reviews - RNA(2021)10.1002/wrna.1663

N/A

0DataRank · unranked

43 citations

William Gasperi, Ulrike Begley, Steven Nevins, Sabrina M. Huber, Peter C. Dedon +2 more

Dysfunctional tRNA reprogramming and codon-biased translation in cancer

Trends in Molecular Medicine(2022)10.1016/j.molmed.2022.09.007

N/A

0DataRank · unranked

68 citations

Thomas J. Begley, Peter C. Dedon

Arsenite toxicity is regulated by queuine availability and oxidation-induced reprogramming of the human tRNA epitranscriptome

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2123529119

N/A

0DataRank · unranked

54 citations

Ulrike Begley, Anwesha Sarkar, William Gasperi, Evan T. Davis, Vasudha Surampudi +5 more

Epitranscriptomic Reprogramming Is Required to Prevent Stress and Damage from Acetaminophen

Genes(2022)10.3390/genes13030421

N/A

0DataRank · unranked

20 citations

Qishan Lin, J. Andrés Melendez, Thomas J. Begley, Sara Evke

Disease-associated inosine misincorporation into RNA hinders translation

Nucleic Acids Research(2022)10.1093/nar/gkac709

N/A

0DataRank · unranked

16 citations

Lindsey A. Jones, Ryan Meng, Hannah K. Shorrock, Jared Richardson, Sharon Shaughnessy +7 more

Molecular Coping Mechanisms: Reprogramming tRNAs To Regulate Codon-Biased Translation of Stress Response Proteins

Accounts of Chemical Research(2023)10.1021/acs.accounts.3c00572

N/A

0DataRank · unranked

29 citations

Thomas J. Begley, Peter C. Dedon, Michelle M. Mitchener

Dengue virus exploits the host tRNA epitranscriptome to promote viral replication

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.05.565734

N/A

0DataRank · unranked

10 citations

Newman Siu Kwan Sze, Yuka Suzuki, Takayuki Ohira, Tsutomu Suzuki, Thomas J. Begley +2 more

Stress response regulation of mRNA translation: Implications for antioxidant enzyme expression in cancer

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2317846121

N/A

0DataRank · unranked

20 citations

Scot R. Kimball, Elena Piskounova, Thomas J. Begley, Nadine Hempel, Yeon Kim

Correction to “Molecular Coping Mechanisms: Reprogramming tRNAs to Regulate Codon-Biased Translation of Stress Response Proteins”

Accounts of Chemical Research(2024)10.1021/acs.accounts.4c00466

N/A

0DataRank · unranked

0 citations

Thomas J. Begley, Peter C. Dedon, Michelle M. Mitchener

tRNA modification profiling reveals epitranscriptome regulatory networks in Pseudomonas aeruginosa

Nucleic Acids Research(2025)10.1093/nar/gkaf696

N/A

0DataRank · unranked

7 citations

Junzhou Wu, Yifeng Yuan, Leon Fan, Wei Lin Patrina Chua, Yan Han Sharon Ling +8 more

5-Methyluridine is Ubiquitous in Pseudomonas aeruginosa tRNA and Modulates Antimicrobial Resistance and Virulence

Journal of Molecular Biology(2025)10.1016/j.jmb.2025.169020

N/A

0DataRank · unranked

6 citations

Ruixi Chen, Junzhou Wu, Michael S. DeMott, Jingjing Sun, Kamonwan Phatinuwat +7 more

A Geranylated Natural Product Simamycin Disrupts the Allosteric Catalysis of tRNA-2-selenouridine Synthase SelU

Biochemistry(2025)10.1021/acs.biochem.5c00053

N/A

0DataRank · unranked

2 citations

Alexander Shekhtman, Francesco Epifano, Salvatore Genovese, Serena Fiorito, Thomas J. Begley +2 more

Genes and Pathways Comprising the Human and Mouse ORFeomes Display Distinct Codon Bias Signatures that Can Regulate Protein Levels

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.02.03.636209

N/A

0DataRank · unranked

3 citations

Rahul Raman, Shane R. Byrne, Farzan Ghanegolmohammadi, Chetna Mathur, Ulrike Begley +3 more

An Oxyprenylated Phenylpropanoid Pharmacologic Scaffold for SelU Inhibition

ChemBioChem(2025)10.1002/cbic.202500280

N/A

0DataRank · unranked

0 citations

Alexander Shekhtman, Salvatore Genovese, Chiara Collevecchio, Serena Fiorito, Thomas J. Begley +3 more