Olga G. Troyanskaya

Also affiliated with Institute for Integrative and Experimental Genomics, Flatiron Health (United States)

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

6.7Author DataRank

Indexed papers

5in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 5 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A reference tissue atlas for the human kidney

Science Advances(2022)10.1126/sciadv.abn4965

Top 5%

4.1DataRank

Top 5%173 citations

Rachel Sealfon, Rajasree Menon, Michael T. Eadon, Blue B. Lake, Becky Steck +40 more

Papers

Driven by 64 papers — median percentile 60. Top paper: “IFNγ-Dependent Tissue-Immune Homeostasis Is Co-opted in the Tumor Microenvironment”.

IFNγ-Dependent Tissue-Immune Homeostasis Is Co-opted in the Tumor Microenvironment

Cell(2017)10.1016/j.cell.2017.06.016

N/A

8.4DataRank · unranked

191 citations

Mayte Suárez-Fariñas, Benjamin Izar, Ruth Dannenfelser, Itay Tirosh, Yong Liu +28 more

IMP: a multi-species functional genomics portal for integration, visualization and prediction of protein functions and networks

Nucleic Acids Research(2012)10.1093/nar/gks458

N/A

5.5DataRank · unranked

137 citations

Christopher Y. Park, Casey S. Greene, Lars A. Bongo, Yuanfang Guan, Olga G. Troyanskaya +2 more

A reference tissue atlas for the human kidney

Science Advances(2022)10.1126/sciadv.abn4965

Top 5%

4.1DataRank

Top 5%173 citations

Rachel Sealfon, Rajasree Menon, Michael T. Eadon, Blue B. Lake, Becky Steck +40 more

Selective Neuronal Vulnerability in Alzheimer’s Disease: A Network-Based Analysis

Neuron(2020)10.1016/j.neuron.2020.06.010

N/A

4.0DataRank · unranked

191 citations

Vicky Yao, Patricia Rodriguez‐Rodriguez, Rose Oughtred, Jennifer Rust, Zakary Plautz +16 more

SARS-CoV-2 receptor networks in diabetic and COVID-19–associated kidney disease

Kidney International(2020)10.1016/j.kint.2020.09.015

N/A

2.2DataRank · unranked

91 citations

Edgar A. Otto, Rachel Sealfon, Viji Nair, Aaron K. Wong, Chandra L. Theesfeld +27 more

Functional Knowledge Transfer for High-accuracy Prediction of Under-studied Biological Processes

PLoS Computational Biology(2013)10.1371/journal.pcbi.1002957

N/A

1.9DataRank · unranked

70 citations

Aaron K. Wong, Casey S. Greene, Jessica Rowland, Yuanfang Guan, Lars A. Bongo +4 more

Spatial transcriptional mapping of the human nephrogenic program

Developmental Cell(2021)10.1016/j.devcel.2021.07.017

N/A

1.8DataRank · unranked

83 citations

Rachel Sealfon, Xi Chen, Riana K. Parvez, Andrew Ransick, Guilherme De Sena Brandine +18 more

Single nucleus multi-omics regulatory landscape of the murine pituitary

Nature Communications(2021)10.1038/s41467-021-22859-w

Top 13%

1.6DataRank

Top 13%79 citations

Zidong Zhang, Michel Zamojski, Gregory R. Smith, Natalia Mendelev, Hanqing Liu +23 more

Missing value estimation methods for DNA microarrays

Bioinformatics(2001)10.1093/bioinformatics/17.6.520

N/A

1.3DataRank · unranked

4216 citations

Michael Cantor, Gavin Sherlock, Pat Brown, Trevor Hastie, Robert Tibshirani +3 more

Understanding multicellular function and disease with human tissue-specific networks

Nature Genetics(2015)10.1038/ng.3259

N/A

1.0DataRank · unranked

925 citations

Krishnan, Arjun, Aaron K. Wong, Emanuela Ricciotti, Daniel S. Himmelstein, Ran Zhang +12 more

A Bayesian framework for combining heterogeneous data sources for gene function prediction (inSaccharomyces cerevisiae)

Proceedings of the National Academy of Sciences(2003)10.1073/pnas.0832373100

N/A

0.942DataRank · unranked

533 citations

Kara Dolinski, Art B. Owen, Russ B. Altman, David Botstein, Olga G. Troyanskaya

Genomic RNA Elements Drive Phase Separation of the SARS-CoV-2 Nucleocapsid

Molecular Cell(2020)10.1016/j.molcel.2020.11.041

N/A

0.885DataRank · unranked

363 citations

Christine A. Roden, Mark A. Boerneke, Grace A. McLaughlin, Irwin Jungreis, Ethan J. Fritch +13 more

Variation in Gene Expression Patterns in Human Gastric Cancers

Molecular Biology of the Cell(2003)10.1091/mbc.e02-12-0833

N/A

0.865DataRank · unranked

318 citations

Suet Y. Leung, Siu T. Yuen, Kent-Man Chu, Jiafu Ji, Rui Li +11 more

A critical assessment of Mus musculusgene function prediction using integrated genomic evidence

Genome Biology(2008)10.1186/gb-2008-9-s1-s2

N/A

0.834DataRank · unranked

258 citations

Murat Tasan, Chad L. Myers, Hyunju Lee, Trupti Joshi, Chao Zhang +35 more

Genomic analyses implicate noncoding de novo variants in congenital heart disease

Nature Genetics(2020)10.1038/s41588-020-0652-z

N/A

0.779DataRank · unranked

179 citations

Sarah U. Morton, Seong Won Kim, Alexander Kitaygorodsky, Lauren K. Wasson, Kathleen Chen +30 more

Targeted exploration and analysis of large cross-platform human transcriptomic compendia

Nature Methods(2015)10.1038/nmeth.3249

N/A

0.740DataRank · unranked

138 citations

Aaron K. Wong, Krishnan, Arjun, Sietse Aukema, Alicja Tadych, Ran Zhang +10 more

An activation to memory differentiation trajectory of tumor-infiltrating lymphocytes informs metastatic melanoma outcomes

Cancer Cell(2022)10.1016/j.ccell.2022.04.005

N/A

0.617DataRank · unranked

60 citations

Akanksha Verma, Ruth Dannenfelser, Marit Melssen, Itay Tirosh, Benjamin Izar +19 more

A methylation clock model of mild SARS‐CoV‐2 infection provides insight into immune dysregulation

Molecular Systems Biology(2023)10.15252/msb.202211361

N/A

0.613DataRank · unranked

21 citations

Clare Miller, Venugopalan D. Nair, Yongchao Ge, Mary Anne S. Amper, Antonio Cappuccio +27 more

Atlas of primary cell-type-specific sequence models of gene expression and variant effects

Cell Reports Methods(2023)10.1016/j.crmeth.2023.100580

Top 40%

0.479DataRank

Top 40%17 citations

Chandra L. Theesfeld, Aaron K. Wong, Zijun Zhang, Kara Dolinski, Olga G. Troyanskaya +1 more

Integrative Systems Biology for Data-Driven Knowledge Discovery

Seminars in Nephrology(2010)10.1016/j.semnephrol.2010.07.002

N/A

0.457DataRank · unranked

20 citations

Olga G. Troyanskaya, Casey S. Greene

Peak-agnostic high-resolution cis-regulatory circuitry mapping using single cell multiome data

Nucleic Acids Research(2023)10.1093/nar/gkad1166

N/A

0.448DataRank · unranked

9 citations

Frederique Ruf-Zamojski, Michel Zamojski, Daniel J. Bernard, Xi Chen, Olga G. Troyanskaya +2 more

Integrated single-cell multiome analysis reveals muscle fiber-type gene regulatory circuitry modulated by endurance exercise

Genome Research(2025)10.1101/gr.280051.124

N/A

0.312DataRank · unranked

7 citations

Gregory R. Smith, Zidong Zhang, Xi Chen, Toby L. Chambers, Frederique Ruf-Zamojski +13 more

Blood RNA alternative splicing events as diagnostic biomarkers for infectious disease

Cell Reports Methods(2023)10.1016/j.crmeth.2023.100395

N/A

0.312DataRank · unranked

7 citations

Natalie Sauerwald, Antonio Cappuccio, Irene Ramos, Venugopalan D. Nair, German Nudelman +21 more

A reference tissue atlas for the human kidney

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.23.216507

Top 55%

0.295DataRank

Top 55%5 citations

Rachel Sealfon, Rajasree Menon, Michael T. Eadon, Blue B. Lake, Becky Steck +37 more

Integrated single-cell multiome analysis reveals muscle fiber-type gene regulatory circuitry modulated by endurance exercise

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.26.558914

N/A

0.269DataRank · unranked

5 citations

Gregory R. Smith, Zidong Zhang, Xi Chen, Toby L. Chambers, Frederique Ruf-Zamojski +13 more

Voices in methods development

Nature Methods(2019)10.1038/s41592-019-0585-6

N/A

0.269DataRank · unranked

5 citations

Rosalind Mott Firenze, Clifford Brangwynne, Ibrahim I. Cissé, Oliver Fiehn, Petra Fromme +44 more

Mapping disease regulatory circuits at cell-type resolution from single-cell multiomics data

medRxiv(2022)10.1101/2022.12.06.22282077

N/A

0.231DataRank · unranked

3 citations

Yuan Wang, Antonio Cappuccio, Wan-Sze Cheng, Frederique Ruf Zamojski, Venugopalan D. Nair +23 more

Single nucleus multi-omics regulatory atlas of the murine pituitary

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.06.138024

Top 65%

0.208DataRank

Top 65%3 citations

Zidong Zhang, Michel Zamojski, Gregory R. Smith, Natalia Mendelev, Hanqing Liu +23 more

DeepArk: modeling cis -regulatory codes of model species with deep learning

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.23.058040

N/A

0.182DataRank · unranked

2 citations

João Raimundo, Alicja Tadych, Yuji Yamazaki, Aaron K. Wong, Chandra L. Theesfeld +3 more

Automated single-cell omics end-to-end framework with data-driven batch inference

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.01.564815

N/A

0.165DataRank · unranked

2 citations

William Thistlethwaite, Alicja Tadych, Frederique Ruf-Zamojski, Daniel J. Bernard, Antonio Cappuccio +5 more

Decomposition of phenotypic heterogeneity in autism reveals underlying genetic programs

Nature Genetics(2025)10.1038/s41588-025-02224-z

N/A

0DataRank · unranked

71 citations

Natalie Sauerwald, LeeAnne Green Snyder, Jennifer H. Foss‐Feig, Christopher Y. Park, Yun Hao +4 more

3D chromatin structures precede genome activation in Drosophila embryogenesis

Cell Genomics(2025)10.1016/j.xgen.2025.101002

N/A

0DataRank · unranked

6 citations

Evan M. Cofer, Xinyang Bing, Benjamin J. Brack, Marcus Curlin, Chandra L. Theesfeld +4 more

Innate immune molecular landscape following controlled human influenza virus infection

Cell Reports(2025)10.1016/j.celrep.2025.116312

N/A

0DataRank · unranked

5 citations

Sindhu Vangeti, Wan-Sze Cheng, Pankaj Agarwal, Antonio Cappuccio, Wenliang Wang +18 more

An Evidence-Grounded Research Assistant for Functional Genomics and Drug Target Assessment

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.64898/2025.12.30.697073

N/A

0DataRank · unranked

2 citations

Dmitri Kosenkov, Keerthana Nallamotu, Sanketh Vedula, Daniil Sokolov, Guillermo Sapiro +2 more

Exploring How Workflow Variations in Denaturation-Based Assays Impact Global Protein–Protein Interaction Predictions

Molecular & Cellular Proteomics(2025)10.1016/j.mcpro.2025.101479

N/A

0DataRank · unranked

0 citations

Laura M Haubold, Josiah E. Hutton, Olga G. Troyanskaya, Ileana M. Cristea, Tavis J. Reed

Gene-centered representation of coding and regulatory variation enables outcome prediction

bioRxiv (Cold Spring Harbor Laboratory)(2026)10.64898/2026.01.27.701808

N/A

0DataRank · unranked

0 citations

Vessela N Kristensen, Christopher Y. Park, Chandra L. Theesfeld, Laura Mariani, Matthias Kretzler +4 more

Selected proceedings of the First Summit on Translational Bioinformatics 2008

BMC Bioinformatics(2009)10.1186/1471-2105-10-s2-i1

N/A

0DataRank · unranked

0 citations

Indra Neil Sarkar, Marco F. Ramoni, Yves A. Lussier, Olga G. Troyanskaya, Atul Janardhan Butte

RNA Identification of PRIME Cells Predicting Rheumatoid Arthritis Flares

New England Journal of Medicine(2020)10.1056/nejmoa2004114

N/A

0DataRank · unranked

208 citations

Vicky Yao, Kirsty Sawicka, John J. Fak, Mayu O. Frank, Salina Parveen +7 more

Single cell transcriptomics identifies focal segmental glomerulosclerosis remission endothelial biomarker

JCI Insight(2020)10.1172/jci.insight.133267

N/A

0DataRank · unranked

163 citations

Edgar A. Otto, Paul Hoover, Sean Eddy, Laura H. Mariani, Bradley Godfrey +18 more

SARS-CoV-2 Transmission among Marine Recruits during Quarantine

New England Journal of Medicine(2020)10.1056/nejmoa2029717

N/A

0DataRank · unranked

118 citations

Irene Ramos, Ajay Obla, Carl Goforth, Dawn L. Weir, Yongchao Ge +36 more

Discriminatory Power of Combinatorial Antigen Recognition in Cancer T Cell Therapies

Cell Systems(2020)10.1016/j.cels.2020.08.002

N/A

0DataRank · unranked

108 citations

Gregory M. Allen, Benjamin VanderSluis, Ashley K. Koegel, Sarah Levinson, Sierra R. Stark +5 more

Lack of a site-specific phosphorylation of Presenilin 1 disrupts microglial gene networks and progenitors during development

PLoS ONE(2020)10.1371/journal.pone.0237773

N/A

0DataRank · unranked

11 citations

Ran Zhang, Luka Mesin, Diego Mourão‐Sá, Estefania P. Azevedo, Olga G. Troyanskaya +3 more

Machine learning, the kidney, and genotype–phenotype analysis

Kidney International(2020)10.1016/j.kint.2020.02.028

N/A

0DataRank · unranked

39 citations

Laura H. Mariani, Matthias Kretzler, Olga G. Troyanskaya, Rachel Sealfon

Presenilin 1 phosphorylation regulates amyloid-β degradation by microglia

Molecular Psychiatry(2020)10.1038/s41380-020-0856-8

N/A

0DataRank · unranked

39 citations

Thomas Liebmann, Ran Zhang, Jerry C. Chang, Estefania P. Azevedo, Eitan Wong +5 more

Specific viral RNA drives the SARS CoV-2 nucleocapsid to phase separate

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.11.147199

N/A

0DataRank · unranked

58 citations

Christine Roden, Mark A. Boerneke, Rachel Sealfon, Grace A. McLaughlin, Irwin Jungreis +11 more

Spatial Transcriptional Mapping of the Human Nephrogenic Program

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.27.060749

N/A

0DataRank · unranked

16 citations

Rachel Sealfon, Xi Chen, Riana K. Parvez, Andrew Ransick, Guilherme De Sena Brandine +18 more

SynNotch-CAR T cells overcome challenges of specificity, heterogeneity, and persistence in treating glioblastoma

Science Translational Medicine(2021)10.1126/scitranslmed.abe7378

N/A

0DataRank · unranked

501 citations

Payal Watchmaker, Milos Simic, Ryan Gilbert, Aileen W. Li, Nira A. Krasnow +16 more

Double-stranded RNA drives SARS-CoV-2 nucleocapsid protein to undergo phase separation at specific temperatures

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.14.448452

N/A

0DataRank · unranked

15 citations

Yifan Dai, Ian Seim, Myungwoon Lee, Rachel Sealfon, Grace A. McLaughlin +10 more

Modeling transcriptional regulation of model species with deep learning

Genome Research(2021)10.1101/gr.266171.120

N/A

0DataRank · unranked

14 citations

João Raimundo, Alicja Tadych, Yuji Yamazaki, Aaron K. Wong, Chandra L. Theesfeld +3 more

A sequence-based global map of regulatory activity for deciphering human genetics

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.29.454384

N/A

0DataRank · unranked

12 citations

Aaron K. Wong, Olga G. Troyanskaya, Jian Zhou, Kathleen M. Chen

AMBIENT: Accelerated Convolutional Neural Network Architecture Search for Regulatory Genomics

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.25.432960

N/A

0DataRank · unranked

4 citations

Evan M. Cofer, Olga G. Troyanskaya, Zijun Zhang

A sequence-based global map of regulatory activity for deciphering human genetics

Nature Genetics(2022)10.1038/s41588-022-01102-2

N/A

0DataRank · unranked

282 citations

Aaron K. Wong, Olga G. Troyanskaya, Jian Zhou, Kathleen M. Chen

Double-stranded RNA drives SARS-CoV-2 nucleocapsid protein to undergo phase separation at specific temperatures

Nucleic Acids Research(2022)10.1093/nar/gkac596

N/A

0DataRank · unranked

92 citations

Yifan Dai, Catherine A. Giannetti, Ian Seim, Myungwoon Lee, Rachel Sealfon +11 more

Asymptomatic SARS-CoV-2 Infection Is Associated With Higher Levels of Serum IL-17C, Matrix Metalloproteinase 10 and Fibroblast Growth Factors Than Mild Symptomatic COVID-19

Frontiers in Immunology(2022)10.3389/fimmu.2022.821730

N/A

0DataRank · unranked

40 citations

Natalie Sauerwald, Carl Goforth, Sivakumar Periasamy, Dawn L. Weir, Stephen E. Lizewski +19 more

Pre-infection antiviral innate immunity contributes to sex differences in SARS-CoV-2 infection

Cell Systems(2022)10.1016/j.cels.2022.10.005

N/A

0DataRank · unranked

21 citations

Zijun Zhang, Irene Ramos, Venugopalan D. Nair, Alessandra Soares‐Schanoski, Yongchao Ge +27 more

SARS-CoV-2 Outbreak Dynamics in an Isolated US Military Recruit Training Center With Rigorous Prevention Measures

Epidemiology(2022)10.1097/ede.0000000000001523

N/A

0DataRank · unranked

16 citations

Rachel Sealfon, Sang Woo Park, Gregory R. Smith, Chad K. Porter, Ana S. Gonzalez‐Reiche +38 more

Oral mucosal breaks trigger anti-citrullinated bacterial and human protein antibody responses in rheumatoid arthritis

Science Translational Medicine(2023)10.1126/scitranslmed.abq8476

N/A

0DataRank · unranked

106 citations

Tobias V. Lanz, Caryn Hale, Gregory D. Sepich‐Poore, Cameron Martino, Austin D. Swafford +30 more

Mapping disease regulatory circuits at cell-type resolution from single-cell multiomics data

Nature Computational Science(2023)10.1038/s43588-023-00476-5

N/A

0DataRank · unranked

27 citations

Yuan Wang, Antonio Cappuccio, Wan-Sze Cheng, Frederique Ruf-Zamojski, Venugopalan D. Nair +23 more

Programming tissue-sensing T cells that deliver therapies to the brain

Science(2024)10.1126/science.adl4237

N/A

0DataRank · unranked

80 citations

Payal Watchmaker, Sasha Gupta, Yuan Wang, Sharon A. Sagan, Jason Duecker +18 more

Tapioca: a platform for predicting de novo protein–protein interactions in dynamic contexts

Nature Methods(2024)10.1038/s41592-024-02179-9

N/A

0DataRank · unranked

26 citations

Matthew D. Tyl, Alicja Tadych, Olga G. Troyanskaya, Ileana M. Cristea, Tavis. J. Reed

A cell autonomous regulator of neuronal excitability modulates tau in Alzheimer’s disease vulnerable neurons

Brain(2024)10.1093/brain/awae051

N/A

0DataRank · unranked

17 citations

Luis Enrique Arroyo‐García, Christina Tsagkogianni, Lechuan Li, Wei Wang, Ákos Végvári +9 more

Automated single-cell omics end-to-end framework with data-driven batch inference

Cell Systems(2024)10.1016/j.cels.2024.09.003

N/A

0DataRank · unranked

8 citations

William Thistlethwaite, Alicja Tadych, Frederique Ruf-Zamojski, Daniel J. Bernard, Antonio Cappuccio +5 more

Decomposition of phenotypic heterogeneity in autism reveals distinct and coherent genetic programs

medRxiv(2024)10.1101/2024.08.15.24312078

N/A

0DataRank · unranked

5 citations

Natalie Sauerwald, LeeAnne Green Snyder, Jennifer H. Foss‐Feig, Christopher Y. Park, Yun Hao +4 more

Innate immune epigenomic landscape following controlled human influenza virus infection

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.20.612974

N/A

0DataRank · unranked

0 citations

Sindhu Vangeti, Wan-Sze Cheng, Pankaj Agarwal, Antonio Cappuccio, Wenliang Wang +18 more

Olga G. Troyanskaya

Indexed papers

Top data-sharing exemplar

Papers