Jonathan Foox

Also affiliated with Cornell University, Weill Cornell Medicine

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

6.9Author DataRank

Indexed papers

6in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 6 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Establishing community reference samples, data and call sets for benchmarking cancer mutation detection using whole-genome sequencing

Nature Biotechnology(2021)10.1038/s41587-021-00993-6

Top 8%

2.7DataRank

Top 8%153 citations

Bin Zhu, Yongmei Zhao, Wanqiu Chen, Zhaowei Yang, Liz Kerrigan +88 more

Papers

Driven by 46 papers — median percentile 76. Top paper: “Immune complement and coagulation dysfunction in adverse outcomes of SARS-CoV-2 infection”.

Immune complement and coagulation dysfunction in adverse outcomes of SARS-CoV-2 infection

Nature Medicine(2020)10.1038/s41591-020-1021-2

N/A

9.4DataRank · unranked

369 citations

Phyllis Thangaraj, Cem Meydan, Jonathan Foox, Daniel Butler, Jacob Kim +7 more

Fundamental Biological Features of Spaceflight: Advancing the Field to Enable Deep-Space Exploration

Cell(2020)10.1016/j.cell.2020.10.050

N/A

7.0DataRank · unranked

468 citations

Ryan T. Scott, Matthew MacKay, Eloise Pariset, Egle Cekanaviciute, Richard Barker +33 more

Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions

Nature Communications(2021)10.1038/s41467-021-21361-7

N/A

6.5DataRank · unranked

190 citations

Christopher Mozsary, Cem Meydan, Jonathan Foox, Joel Rosiene, Alon Shaiber +74 more

Shotgun Transcriptome and Isothermal Profiling of SARS-CoV-2 Infection Reveals Unique Host Responses, Viral Diversification, and Drug Interactions

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.20.048066

N/A

5.1DataRank · unranked

96 citations

Christopher Mozsary, Cem Meydan, David Danko, Jonathan Foox, Joel Rosiene +47 more

Establishing community reference samples, data and call sets for benchmarking cancer mutation detection using whole-genome sequencing

Nature Biotechnology(2021)10.1038/s41587-021-00993-6

Top 8%

2.7DataRank

Top 8%153 citations

Bin Zhu, Yongmei Zhao, Wanqiu Chen, Zhaowei Yang, Liz Kerrigan +88 more

Whole genome and exome sequencing reference datasets from a multi-center and cross-platform benchmark study

Scientific Data(2021)10.1038/s41597-021-01077-5

Top 12%

1.7DataRank

Top 12%60 citations

Li Tai Fang, Tsai-Wei Shen, Sulbha Choudhari, Keyur Talsania, Xiongfong Chen +33 more

System-wide transcriptome damage and tissue identity loss in COVID-19 patients

Cell Reports Medicine(2022)10.1016/j.xcrm.2022.100522

N/A

1.2DataRank · unranked

51 citations

Jonathan Foox, Tyler Hether, David Danko, Sarah Warren, Youngmi Kim +43 more

Longitudinal multi-omics analysis of host microbiome architecture and immune responses during short-term spaceflight

Nature Microbiology(2024)10.1038/s41564-024-01635-8

N/A

1.2DataRank · unranked

74 citations

JangKeun Kim, Eliah Overbey, Krista Ryon, Jonathan Foox, Maria A. Sierra +32 more

Cosmic kidney disease: an integrated pan-omic, physiological and morphological study into spaceflight-induced renal dysfunction

Nature Communications(2024)10.1038/s41467-024-49212-1

Top 20%

0.998DataRank

Top 20%50 citations

Kevin Nestler, Charlotte A. Nelson, Viola D’Ambrosio, Chutong Zhong, Zhongwang Li +95 more

Towards geospatially-resolved public-health surveillance via wastewater sequencing

Nature Communications(2024)10.1038/s41467-024-52427-x

Top 28%

0.723DataRank

Top 28%22 citations

Jonathan Foox, Krista Ryon, Daniel Butler, Namita Damle, B. G. Young +33 more

Role of miR-2392 in driving SARS-CoV-2 infection

Cell Reports(2021)10.1016/j.celrep.2021.109839

N/A

0.694DataRank · unranked

101 citations

Francisco J. Enguita, Deanne Taylor, Robert J. Griffin, Waldemar Priebe, Mark R. Emmett +54 more

Whole Genome and Exome Sequencing Reference Datasets from A Multi-center and Cross-platform Benchmark Study

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.27.433136

Top 33%

0.603DataRank

Top 33%10 citations

Li Tai Fang, Tsai-Wei Shen, Sulbha Choudhari, Keyur Talsania, Xiongfong Chen +31 more

Elevated A-to-I RNA editing in COVID-19 infected individuals

NAR Genomics and Bioinformatics(2023)10.1093/nargab/lqad092

N/A

0.603DataRank · unranked

19 citations

David Gorelik, Jiwoon Park, Cem Meydan, Jonathan Foox, Miriam Karmon +8 more

Identification of Immune complement function as a determinant of adverse SARS-CoV-2 infection outcome

medRxiv(2020)10.1101/2020.05.05.20092452

N/A

0.510DataRank · unranked

29 citations

Phyllis Thangaraj, Cem Meydan, Jonathan Foox, Daniel Butler, Ben May +6 more

Characterization of subclonal variants in HG002 Genome in a Bottle reference material as a resource for benchmarking variant callers

Cell Genomics(2025)10.1016/j.xgen.2025.101104

Top 65%

0.208DataRank

Top 65%3 citations

Adetola A. Abdulkadir, Megan H. Cleveland, Jennifer McDaniel, David Jáspez, Luis Alberto Rubio-Rodríguez +33 more

Viral activation and ecological restructuring characterize a microbiome axis of spaceflight-associated immune activation

Research Square(2023)10.21203/rs.3.rs-2493867/v1

N/A

0.172DataRank · unranked

2 citations

Braden Tierney, JangKeun Kim, Eliah Overbey, Krista Ryon, Jonathan Foox +32 more

Geospatially-resolved public-health surveillance via wastewater sequencing

medRxiv(2023)10.1101/2023.05.31.23290781

N/A

0.104DataRank · unranked

1 citations

Jonathan Foox, Krista Ryon, Daniel Butler, Namita Damle, B. G. Young +30 more

Cell-free DNA (cfDNA) and exosome profiling from a year-long human spaceflight reveals circulating biomarkers

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.08.373530

N/A

0.104DataRank · unranked

1 citations

Kirill Grigorev, Cem Meydan, Fanny A. Pelissier Vatter, Michele Cioffi, Varsha Rao +25 more

DNA methylation calling tools for Oxford Nanopore sequencing: a survey and human epigenome-wide evaluation

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.05.442849

N/A

0DataRank · unranked

23 citations

Wojciech Rosikiewicz, Ziwei Pan, Nathaniel Jillette, Ping Wang, Aziz Taghbalout +6 more

The Great Deceiver: miR-2392’s Hidden Role in Driving SARS-CoV-2 Infection

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.23.441024

N/A

0DataRank · unranked

7 citations

Francisco J. Enguita, Deanne Taylor, Robert J. Griffin, Waldemar Priebe, Mark R. Emmett +43 more

Betacoronavirus-specific alternate splicing

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.02.450920

N/A

0DataRank · unranked

0 citations

Bruce J. Aronow, Stephen B. Baylin, Daniel Butler, Jonathan Foox, Shawn Levy +9 more

Role of miR-2392 in driving SARS-CoV-2 infection

UNC Libraries(2021)10.17615/cm13-py86

N/A

0DataRank · unranked

0 citations

R. Meller, Prashant Nagpal, Jonathan C. Schisler, Peter Grabham, Bruna Cerqueira +44 more

Relationships between SARS-CoV-2 in Wastewater and COVID-19 Clinical Cases and Hospitalizations, with and without Normalization against Indicators of Human Waste

ACS ES&T Water(2022)10.1021/acsestwater.2c00045

N/A

0DataRank · unranked

106 citations

Kristina M. Babler, Mark Sharkey, Ayaaz Amirali, Cynthia Beaver, Melinda Boone +28 more

Assessing reproducibility of inherited variants detected with short-read whole genome sequencing

Genome biology(2022)10.1186/s13059-021-02569-8

N/A

0DataRank · unranked

56 citations

Luyao Ren, Vitor Onuchic, Meijian Guan, Rebecca Kusko, Steve Bruinsma +50 more

Comprehensive Multi-omics Analysis Reveals Mitochondrial Stress as a Central Biological Hub for Spaceflight Impact

Cell(2020)10.1016/j.cell.2020.11.002

N/A

0DataRank · unranked

408 citations

Hossein Fazelinia, Sara Brin Rosenthal, Evagelia C. Laiakis, Man S. Kim, Cem Meydan +33 more

Core mitochondrial genes are down-regulated during SARS-CoV-2 infection of rodent and human hosts

Science Translational Medicine(2023)10.1126/scitranslmed.abq1533

N/A

0DataRank · unranked

186 citations

Joseph M. Dybas, Hossein Fazelinia, Man S. Kim, Justin J. Frere, Yuanchao Zhang +46 more

Resistance to PRMT5-targeted therapy in mantle cell lymphoma

Blood Advances(2023)10.1182/bloodadvances.2023010554

N/A

0DataRank · unranked

11 citations

Shirsha Koirala, Shelby Sloan, Fiona Brown-Burke, Christoph Weigel, Lynda Villagomez +19 more

Lethal COVID-19 Associates With RAAS-Induced Inflammation For Multiple Organ Damage Including Mediastinal Lymph Nodes

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.08.561395

N/A

0DataRank · unranked

6 citations

Michael J. Topper, Katherine Beigel, Jeffrey Haltom, Amy Chadburn, Justin J. Frere +56 more

Host transcriptional responses in nasal swabs identify potential SARS-CoV-2 infection in PCR negative patients

UNC Libraries(2023)10.17615/s7xk-wv12

N/A

0DataRank · unranked

0 citations

Christopher E. Mason, Cem Meydan, Christopher Mozsary, D. Butler, Kyle M. Hernandez +6 more

Molecular and physiological changes in the SpaceX Inspiration4 civilian crew

Nature(2024)10.1038/s41586-024-07648-x

N/A

0DataRank · unranked

60 citations

Eliah Overbey, Jérôme Lacombe, Adrian J. Ecker, Cem Meydan, Krista Ryon +54 more

Single-cell multi-ome and immune profiles of the Inspiration4 crew reveal conserved, cell-type, and sex-specific responses to spaceflight

Nature Communications(2024)10.1038/s41467-024-49211-2

N/A

0DataRank · unranked

58 citations

Braden Tierney, Eliah Overbey, Ezequiel Dantas, Matías Fuentealba, Jiwoon Park +45 more

Genome and clonal hematopoiesis stability contrasts with immune, cfDNA, mitochondrial, and telomere length changes during short duration spaceflight

Precision Clinical Medicine(2024)10.1093/pcmedi/pbae007

N/A

0DataRank · unranked

24 citations

Karolina Sienkiewicz, S Narayanan, Eliah Overbey, Kirill Grigorev, Krista Ryon +38 more

Cosmic kidney disease: an integrated pan-omic, physiological and morphological study into spaceflight-induced renal dysfunction

Figshare(2024)10.17615/x00g-jr51

N/A

0DataRank · unranked

0 citations

Keith Siew, Amanda Saravia-Butler, Fatemeh Afsari, Vaksha Patel, Zhongwang Li +95 more

Augmenting precision medicine via targeted RNA-Seq detection of expressed mutations

npj Precision Oncology(2025)10.1038/s41698-025-00993-8

N/A

0DataRank · unranked

5 citations

Jianying Li, Donald J. Johann, Daniel Butler, Guangchun Chen, Jonathan Foox +20 more

Hidden genomic diversity of SARS-CoV-2: implications for qRT-PCR diagnostics and transmission

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.02.184481

N/A

0DataRank · unranked

16 citations

Medhat Mahmoud, Michael D. Jochum, Yunxi Liu, R. A. Leo Elworth, Qi Wang +15 more

Mutant IDH1 cooperates with NPM1c or FLT3 ITD to drive distinct myeloid diseases and molecular outcomes

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2415779122

N/A

0DataRank · unranked

4 citations

Julie Leca, Xin Zhang, Cem Meydan, Jonathan Foox, Parameswaran Ramachandran +27 more

Transcriptional response modules characterise IL-1β and IL-6 activity in COVID-19

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.22.202275

N/A

0DataRank · unranked

1 citations

Cem Meydan, Jacob Kim, Jonathan Foox, Daniel Butler, Christopher E. Mason +4 more

Identification of Radioresponsive Genes in Esophageal Cancer from Longitudinal and Single Cell Exome Sequencing

International Journal of Radiation Oncology*Biology*Physics(2020)10.1016/j.ijrobp.2020.06.015

N/A

0DataRank · unranked

23 citations

Xiaoyan Zhang, Matthew MacKay, Jonathan Foox, Qiang Hou, Xiaoli Zheng +6 more

A diagnostic host response biosignature for COVID-19 from RNA profiling of nasal swabs and blood

Science Advances(2021)10.1126/sciadv.abe5984

N/A

0DataRank · unranked

114 citations

Andrea Granados, Yale Santos, Venice Servellita, Gregory M. Goldgof, Cem Meydan +27 more

A verified genomic reference sample for assessing performance of cancer panels detecting small variants of low allele frequency

Genome biology(2021)10.1186/s13059-021-02316-z

N/A

0DataRank · unranked

61 citations

Binsheng Gong, Natalia Novoradovskaya, Dan Li, Rebecca Kusko, Todd Richmond +69 more

The SEQC2 epigenomics quality control (EpiQC) study

Genome biology(2021)10.1186/s13059-021-02529-2

N/A

0DataRank · unranked

60 citations

Jessica Nordlund, Claudia Lalancette, Ting Gong, Michelle Lacey, Samantha Lent +52 more

Cross-oncopanel study reveals high sensitivity and accuracy with overall analytical performance depending on genomic regions

Genome biology(2021)10.1186/s13059-021-02315-0

N/A

0DataRank · unranked

40 citations

Dan Li, Rebecca Kusko, Natalia Novoradovskaya, Yifan Zhang, Shangzi Wang +95 more

Molecular Characterization of Increased Amplicon Lengths in SARS-CoV-2 Reverse Transcription Loop-Mediated Isothermal Amplification Assays

Journal of Biomolecular Techniques JBT(2021)10.7171/jbt.21-3203-015

N/A

0DataRank · unranked

5 citations

Andrew Hayden, Marcy Kuentzel, Korin Eckstrom, Jonathan Foox, Daniel Vellone +5 more

Cell-free DNA (cfDNA) and Exosome Profiling from a Year-Long Human Spaceflight Reveals Circulating Biomarkers

iScience(2020)10.1016/j.isci.2020.101844

N/A

0DataRank · unranked

57 citations

Kirill Grigorev, Cem Meydan, Fanny A. Pelissier Vatter, Michele Cioffi, Varsha Rao +26 more

SARS-CoV-2 genomic diversity and the implications for qRT-PCR diagnostics and transmission

Genome Research(2021)10.1101/gr.268961.120

N/A

0DataRank · unranked

55 citations

Medhat Mahmoud, Michael D. Jochum, Yunxi Liu, R. A. Leo Elworth, Qi Wang +15 more

Haplotype diversity and sequence heterogeneity of human telomeres

Genome Research(2021)10.1101/gr.274639.120

N/A

0DataRank · unranked

55 citations

Jonathan Foox, Daniela Bezdan, Daniel Butler, Jared J. Luxton, Jake Reed +7 more

Jonathan Foox

Indexed papers

Top data-sharing exemplar

Papers