Chengzhong Ye

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 9 papers. Top paper: “Learning epistatic polygenic phenotypes with Boolean interactions”.

Learning epistatic polygenic phenotypes with Boolean interactions

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.24.396846

N/A

0.460DataRank · unranked

5 citations

Karl Kumbier, Aldo Cordova-Palomera, Matthew Aguire, Omer Ronen, Chengzhong Ye +8 more

Cross-protein transfer learning substantially improves disease variant prediction

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.15.516532

N/A

0.345DataRank · unranked

9 citations

Chengzhong Ye, Carlos Albors, Ruchir Rastogi, Antoine Koehl, Nilah M. Ioannidis +2 more

Learning epistatic polygenic phenotypes with Boolean interactions

PLOS ONE(2024)10.1371/journal.pone.0298906

N/A

0.241DataRank · unranked

4 citations

Karl Kumbier, Aldo Cordova-Palomera, Matthew Aguirre, Omer Ronen, Chengzhong Ye +8 more

GPN-MSA: an alignment-based DNA language model for genome-wide variant effect prediction

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.10.561776

N/A

0DataRank · unranked

29 citations

Carlos Albors, Alan J. Aw, Chengzhong Ye, Yun S. Song, Gonzalo Benegas

Genomic language models: opportunities and challenges

Trends in Genetics(2025)10.1016/j.tig.2024.11.013

N/A

0DataRank · unranked

94 citations

Chengzhong Ye, Carlos Albors, Jianan Canal Li, Yun S. Song, Gonzalo Benegas

Predicting functional constraints across evolutionary timescales with phylogeny-informed genomic language models

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.21.677619

N/A

0DataRank · unranked

6 citations

Gonzalo Benegas, Carlos Albors, Jianan Canal Li, Sebastian Prillo, Peter D. Fields +3 more

A Phylogenetic Approach to Genomic Language Modeling

arXiv (Cornell University)(2025)10.48550/arxiv.2503.03773

N/A

0DataRank · unranked

0 citations

Jianan Canal Li, Gonzalo Benegas, Chengzhong Ye, Yun S. Song, Carlos Albors

Surface protein imputation from single cell transcriptomes by deep neural networks

Nature Communications(2020)10.1038/s41467-020-14391-0

N/A

0DataRank · unranked

92 citations

Chengzhong Ye, Jingshu Wang, Nancy R. Zhang, Zilu Zhou

Cross-protein transfer learning substantially improves disease variant prediction

Genome biology(2023)10.1186/s13059-023-03024-6

N/A

0DataRank · unranked

72 citations

Chengzhong Ye, Carlos Albors, Ruchir Rastogi, Antoine Koehl, Nilah M. Ioannidis +2 more