Andrew Holmes

Biochemistry, Genetics and Molecular BiologyEnvironmental Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 10 papers. Top paper: “Epididymis-specific RNase A family genes regulate fertility and small RNA processing”.

Epididymis-specific RNase A family genes regulate fertility and small RNA processing

Journal of Biological Chemistry(2024)10.1016/j.jbc.2024.107933

N/A

0.343DataRank · unranked

7 citations

Alka Gupta, Geetika Kharkwal, Edgardo E. Linares, Andrew Holmes, Julian R. Swartz +3 more

tRNA Analysis of eXpression (tRAX): A tool for integrating analysis of tRNAs, tRNA-derived small RNAs, and tRNA modifications

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.02.498565

N/A

0DataRank · unranked

45 citations

Jonathan M. Howard, Patricia P. Chan, Todd M. Lowe, Andrew Holmes

A Standardized Ontology for Naming tRNA-derived RNAs Based on Molecular Origin

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.06.490965

N/A

0DataRank · unranked

7 citations

Patricia P. Chan, Qi Chen, Pavel Ivanov, Laurence Drouard, Norbert Polacek +3 more

A standardized ontology for naming tRNA-derived RNAs based on molecular origin

Nature Methods(2023)10.1038/s41592-023-01813-2

N/A

0DataRank · unranked

90 citations

Patricia P. Chan, Qi Chen, Pavel Ivanov, Laurence Drouard, Norbert Polacek +3 more

A sperm-enriched 5’fragment of tRNA-Valine regulates preimplantation embryonic transcriptome and development

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.08.08.607197

N/A

0DataRank · unranked

5 citations

Andrew Holmes, Sol Katzman, Upasna Sharma, Simeiyun Liu

Epididymal dynamics and preimplantation roles of a sperm-enriched 5′ fragment of tRNA-valine

Cell Reports(2025)10.1016/j.celrep.2025.116366

N/A

0DataRank · unranked

5 citations

Andrew Holmes, Alka Gupta, Sol Katzman, Upasna Sharma, Simeiyun Liu

Analyzing, visualizing, and annotating tRNA-derived RNAs using tRAX and tDRnamer

Methods in enzymology on CD-ROM/Methods in enzymology(2025)10.1016/bs.mie.2024.11.016

N/A

0DataRank · unranked

4 citations

Andrew Holmes, Todd M. Lowe, Patricia P. Chan

A survey of dietary effects on tRNA abundance and modifications

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.10.658430

N/A

0DataRank · unranked

0 citations

Andrew Holmes, Ruoxia Zhao, Cassandra Herbert, Patrick A. Limbach, Todd M. Lowe +2 more

Charged Residues Flanking the Transmembrane Domain of Two Related Toxin–Antitoxin System Toxins Affect Host Response

Toxins(2021)10.3390/toxins13050329

N/A

0DataRank · unranked

6 citations

Jessie Sadlon, Keith E. Weaver, Andrew Holmes

Tracking tRNA evolution in closely related mouse strains

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.30.673268

N/A

0DataRank · unranked

0 citations

Upasna Sharma, Andrew Holmes