Christina A. Cuomo

Also affiliated with John Brown University, Brown University

MedicineImmunology and MicrobiologyBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 3%percentile

1.3Author DataRank

Indexed papers

5in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 5 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Complete Genome Sequences for Two Talaromyces marneffei Clinical Isolates from Northern and Southern Vietnam

Microbiology Resource Announcements(2020)10.1128/mra.01367-19

Top 37%

0.525DataRank

Top 37%11 citations

Terrance Shea, Thu Nguyen, Philip Ashton, John R. Perfect, Thuy Le +1 more

Papers

Driven by 61 papers — median percentile 41. Top paper: “Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement”.

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

PLoS ONE(2014)10.1371/journal.pone.0112963

N/A

1.4DataRank · unranked

10052 citations

Thomas Abeel, Terrance Shea, Margaret Priest, Amr Abouelliel, Sharadha Sakthikumar +7 more

Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium

Nature(2010)10.1038/nature08850

N/A

1.1DataRank · unranked

1810 citations

H. Charlotte van der Does, Katherine A. Borkovich, Jeffrey J. Coleman, Marie-Josée Daboussi, Antonio Di Pietro +79 more

Evolution of pathogenicity and sexual reproduction in eight Candida genomes

Nature(2009)10.1038/nature08064

N/A

1.1DataRank · unranked

1097 citations

Albert J. Vilella, Alireza Heravi-Moussavi, Manuel A. S. Santos, Sharadha Sakthikumar, Carol A. Munro +52 more

The evolution of drug resistance in clinical isolates of Candida albicans

eLife(2015)10.7554/elife.00662

N/A

0.885DataRank · unranked

364 citations

Darren Abbey, Luca Issi, Candace Guiducci, Diego A Martinez, Toni Marie Delorey +10 more

Comparative genomics of white and opaque cell states supports an epigenetic mechanism of phenotypic switching in Candida albicans

G3 Genes Genomes Genetics(2021)10.1093/g3journal/jkab001

N/A

0.549DataRank · unranked

12 citations

Christina A. Cuomo, Richard J. Bennett, Iuliana V. Ene, Chapman Beekman

Complete Genome Sequences for Two Talaromyces marneffei Clinical Isolates from Northern and Southern Vietnam

Microbiology Resource Announcements(2020)10.1128/mra.01367-19

Top 37%

0.525DataRank

Top 37%11 citations

Terrance Shea, Thu Nguyen, Philip Ashton, John R. Perfect, Thuy Le +1 more

Comparative genomics of the closely related fungal genera Cryptococcus and Kwoniella reveals karyotype dynamics and suggests evolutionary mechanisms of pathogenesis

PLoS Biology(2024)10.1371/journal.pbio.3002682

Top 39%

0.490DataRank

Top 39%20 citations

Márcia David‐Palma, Terrance Shea, Katharine Bowers, Sage M. Smith, Arman W. Mohammad +7 more

Application of an optimized annotation pipeline to the Cryptococcus deuterogattii genome reveals dynamic primary metabolic gene clusters and genomic impact of RNAi loss

G3 Genes Genomes Genetics(2021)10.1093/g3journal/jkaa070

N/A

0.483DataRank · unranked

18 citations

Corinne Maufrais, Rodrigo Silva Araujo Streit, Shelby Priest, Christina A. Cuomo, Joseph Heitman +3 more

Improved genome assembly of Candida auris strain B8441 and annotation of B11205

Microbiology Resource Announcements(2024)10.1128/mra.00512-24

Top 59%

0.265DataRank

Top 59%4 citations

Terrance Shea, Christina A. Cuomo, Nicholas C. Cauldron

Author response: The evolution of drug resistance in clinical isolates of Candida albicans

(2014)10.7554/elife.00662.023

N/A

0.104DataRank · unranked

1 citations

Darren Abbey, Luca Issi, Candace Guiducci, Diego A Martinez, Toni Marie Delorey +10 more

Genome-wide analysis of experimentally evolved Candida auris reveals multiple novel mechanisms of multidrug-resistance

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.28.317891

N/A

0DataRank · unranked

4 citations

Siebe Pierson, José F. Muñoz, Ana Subotić, Rita B. Cruz, Christina A. Cuomo +2 more

Application of an Optimized Annotation Pipeline to the Cryptococcus Deuterogattii Genome Reveals Dynamic Primary Metabolic Gene Clusters and Genomic Impact of RNAi Loss

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.01.278374

N/A

0DataRank · unranked

3 citations

Corinne Maufrais, Rodrigo Silva Araujo Streit, Shelby Priest, Christina A. Cuomo, Joseph Heitman +3 more

The Dynamic Genome and Transcriptome of the Human Fungal Pathogen Blastomyces and Close Relative Emmonsia

Digital Commons@Becker (Washington University School of Medicine)(2020)10.17615/e5gj-a863

N/A

0DataRank · unranked

0 citations

Christina A. Cuomo, William E. Goldman, Sharvari Gujja, Christopher A. Desjardins, Sarah Young +21 more

Genome-Wide Analysis of Experimentally Evolved Candida auris Reveals Multiple Novel Mechanisms of Multidrug Resistance

mBio(2021)10.1128/mbio.03333-20

N/A

0DataRank · unranked

203 citations

Siebe Pierson, José F. Muñoz, Ana Subotić, Rita B. Cruz, Christina A. Cuomo +2 more

Clade-specific chromosomal rearrangements and loss of subtelomeric adhesins in Candida auris

Genetics(2021)10.1093/genetics/iyab029

N/A

0DataRank · unranked

124 citations

Rory M. Welsh, Terrance Shea, Dhwani Batra, Lalitha Gade, Dakota Howard +5 more

Amoeba Predation of Cryptococcus neoformans Results in Pleiotropic Changes to Traits Associated with Virulence

mBio(2021)10.1128/mbio.00567-21

N/A

0DataRank · unranked

56 citations

Livia C. Liporagi-Lopes, Samuel Ribeiro dos Santos, Jennifer L. Tenor, John R. Perfect, Christina A. Cuomo +2 more

Gene Expression of Diverse Cryptococcus Isolates during Infection of the Human Central Nervous System

mBio(2021)10.1128/mbio.02313-21

N/A

0DataRank · unranked

55 citations

Poppy Sephton-Clark, Jennifer L. Tenor, Dena L. Toffaletti, Charles Giamberardino, Miriam Haverkamp +3 more

Genomic insights into the host specific adaptation of the Pneumocystis genus

Communications Biology(2021)10.1038/s42003-021-01799-7

N/A

0DataRank · unranked

40 citations

Liang Ma, John P. Dekker, Pavel P. Khil, Jung-Ho Youn, Jason M. Brenchley +20 more

Chromosome-level genome assembly of a human fungal pathogen reveals synteny among geographically distinct species

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.13.452254

N/A

0DataRank · unranked

3 citations

Shirli Cohen, Terrance Shea, Semar Petrus, José F. Muñoz, Shane G. Poplawski +6 more

Genomic variation across a clinical Cryptococcus population linked to disease outcome

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.22.469645

N/A

0DataRank · unranked

3 citations

Jennifer L. Tenor, Dena L. Toffaletti, Nancy Meyers, Charles Giamberardino, Síle F. Molloy +15 more

Inter-species geographic signatures for tracing horizontal gene transfer and long-term persistence of carbapenem resistance

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.08.471225

N/A

0DataRank · unranked

2 citations

Abigail L. Manson, Bruce J. Walker, Thea Brennan-Krohn, Colin J. Worby, Peijun Ma +27 more

The importance of antimicrobial resistance in medical mycology

Nature Communications(2022)10.1038/s41467-022-32249-5

N/A

0DataRank · unranked

222 citations

Carolyn Johnson, Judith Berman, Alix T. Coste, Christina A. Cuomo, David S. Perlin +7 more

The molecular and genetic basis of antifungal resistance in the emerging fungal pathogen Candida auris

Current Opinion in Microbiology(2022)10.1016/j.mib.2022.102208

N/A

0DataRank · unranked

110 citations

Christina A. Cuomo, P. David Rogers, Jeffrey M. Rybak

Diploid-dominant life cycles characterize the early evolution of Fungi

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2116841119

N/A

0DataRank · unranked

82 citations

D. Rabern Simmons, Joyce E. Longcore, Stephen J. Mondo, Kensuke Seto, Gustavo Henrique Jerônimo +23 more

The future of fungi: threats and opportunities

G3 Genes Genomes Genetics(2022)10.1093/g3journal/jkac224

N/A

0DataRank · unranked

55 citations

Judith Berman, David S. Blehert, Robert A. Cramer, Christina A. Cuomo, Cameron R. Currie +29 more

Genomic Variation across a Clinical Cryptococcus Population Linked to Disease Outcome

mBio(2022)10.1128/mbio.02626-22

N/A

0DataRank · unranked

45 citations

Jennifer L. Tenor, Dena L. Toffaletti, Nancy Meyers, Charles Giamberardino, Síle F. Molloy +15 more

Inter-species geographic signatures for tracing horizontal gene transfer and long-term persistence of carbapenem resistance

Genome Medicine(2022)10.1186/s13073-022-01040-y

N/A

0DataRank · unranked

44 citations

Abigail L. Manson, Bruce J. Walker, Thea Brennan-Krohn, Colin J. Worby, Peijun Ma +25 more

Evolution of zygomycete secretomes and the origins of terrestrial fungal ecologies

iScience(2022)10.1016/j.isci.2022.104840

N/A

0DataRank · unranked

38 citations

Yan Wang, Stephen J. Mondo, Steven Ahrendt, William Andreopoulos, Kerrie Barry +22 more

Obligate sexual reproduction of a homothallic fungus closely related to the Cryptococcus pathogenic species complex

eLife(2022)10.7554/elife.79114

N/A

0DataRank · unranked

11 citations

Shelly Applen Clancey, Terrance Shea, Márcia David‐Palma, Anna Floyd Averette, Teun Boekhout +7 more

A novel rRNA hybridization-based approach to rapid, accurate Candida identification directly from blood culture

Medical Mycology(2022)10.1093/mmy/myac065

N/A

0DataRank · unranked

2 citations

Poppy Sephton-Clark, Eleanor L. Young, Tulip A. Jhaveri, Melanie A. Martinsen, Evan Mojica +5 more

Obligate sexual reproduction of a homothallic fungus closely related to the Cryptococcus pathogenic species complex

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.30.486436

N/A

0DataRank · unranked

0 citations

Shelly Applen Clancey, Terrance Shea, Márcia David‐Palma, Anna Floyd Averette, Teun Boekhout +7 more

A novel rRNA hybridization-based approach to rapid, accurate Candida identification directly from blood culture

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.09.491195

N/A

0DataRank · unranked

0 citations

Poppy Sephton-Clark, Eleanor L. Young, Tulip A. Jhaveri, Melanie A. Martinsen, Evan Mojica +5 more

Comparison of long- and short-read metagenomic assembly for low-abundance species and resistance genes

Briefings in Bioinformatics(2023)10.1093/bib/bbad050

N/A

0DataRank · unranked

29 citations

Terrance Shea, Christina A. Cuomo, Bruce J. Walker, Regina C. LaRocque, Abigail L. Manson +3 more

Similar evolutionary trajectories in an environmental Cryptococcus neoformans isolate after human and murine infection

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2217111120

N/A

0DataRank · unranked

21 citations

Scott A. McConnell, Nina T. Grossman, Rosanna P. Baker, Quigly Dragotakes, Yunfan Fan +15 more

Impact of pathogen genetics on clinical phenotypes in a population of Talaromyces marneffei from Vietnam

Genetics(2023)10.1093/genetics/iyad100

N/A

0DataRank · unranked

10 citations

Thu Nguyen, Ngô Thị Hoa, Philip Ashton, H. Rogier van Doorn, Vo Trieu Ly +3 more

Comparing genomic variant identification protocols for Candida auris

Microbial Genomics(2023)10.1099/mgen.0.000979

N/A

0DataRank · unranked

15 citations

José F. Muñoz, Lalitha Gade, Silvia Argimón, Marie‐Elisabeth Bougnoux, Jolene R. Bowers +21 more

Analysis of clinical Candida parapsilosis isolates reveals copy number variation in key fluconazole resistance genes

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.13.571446

N/A

0DataRank · unranked

1 citations

Laura A. Doorley, Jeffrey M. Rybak, Kenneth H. Wolfe, Geraldine Butler, Christina A. Cuomo +2 more

Impact of pathogen genetics on clinical phenotypes in a population of Talaromyces marneffei from Vietnam

北海道大學水産學部研究彙報 = BULLETIN OF THE FACULTY OF FISHERIES HOKKAIDO UNIVERSITY(2023)10.1101/2023.03.30.534926

N/A

0DataRank · unranked

0 citations

Thu Nguyen, Ngô Thị Hoa, Philip Ashton, H. Rogier van Doorn, Vo Trieu Ly +3 more

Genome Sequence of Lichtheimia ornata, an Emerging Opportunistic Mucorales Pathogen

Microbiology Resource Announcements(2023)10.1128/mra.00338-23

Top 100%

0DataRank

Top 100%0 citations

Jason T. Mohabir, Tania Kurbessoian, Brittany Berdy, J Fontaine, Andreas Gnirke +4 more

Comparative genomics of Cryptococcus and Kwoniella reveals pathogenesis evolution and contrasting karyotype dynamics via intercentromeric recombination or chromosome fusion

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.27.573464

Top 100%

0DataRank

Top 100%0 citations

Márcia David‐Palma, Terrance Shea, Katharine Bowers, Sage M. Smith, Arman W. Mohammad +7 more

A secondary mechanism of action for triazole antifungals in Aspergillus fumigatus mediated by hmg1

Nature Communications(2024)10.1038/s41467-024-48029-2

N/A

0DataRank · unranked

50 citations

Jinhong Xie, Adela Martín‐Vicente, Xabier Guruceaga, Harrison I. Thorn, Ashley V. Nywening +12 more

Fungal symbiont transmitted by free-living mice promotes type 2 immunity

Nature(2024)10.1038/s41586-024-08213-2

N/A

0DataRank · unranked

32 citations

Iris H. Gao, Takato Kusakabe, Woan-Yu Lin, Alexander Grier, Xiangyu Pan +14 more

Analysis of clinical Candida parapsilosis isolates reveals copy number variation in key fluconazole resistance genes

Antimicrobial Agents and Chemotherapy(2024)10.1128/aac.01619-23

N/A

0DataRank · unranked

14 citations

Laura A. Doorley, Jeffrey M. Rybak, Kenneth H. Wolfe, Geraldine Butler, Christina A. Cuomo +2 more

Integration of genomic and pharmacokinetic data to predict clinical outcomes in HIV-associated cryptococcal meningitis

mBio(2024)10.1128/mbio.01592-24

N/A

0DataRank · unranked

6 citations

Jason T. Mohabir, Katharine Bowers, Jennifer L. Tenor, Dena L. Toffaletti, Jennifer Unsworth +16 more

New approaches to tackle a rising problem: Large-scale methods to study antifungal resistance

PLoS Pathogens(2024)10.1371/journal.ppat.1012478

N/A

0DataRank · unranked

5 citations

Rebecca S. Shapiro, Christina A. Cuomo, Philippe C Després

Fungal impacts on Earth’s ecosystems

Nature(2025)10.1038/s41586-024-08419-4

N/A

0DataRank · unranked

94 citations

Sarah J. Gurr, Matthew C. Fisher, David S. Blehert, Charles Boone, Arturo Casadevall +28 more

Aneuploidy confers a unique transcriptional and phenotypic profile to Candida albicans

Nature Communications(2025)10.1038/s41467-025-58457-3

N/A

0DataRank · unranked

9 citations

Robert J. Fillinger, P Shane Hendricks, Grégory Thomson, Christina A. Cuomo, Richard J. Bennett +2 more

Mutations in transcription factors that confer fluconazole resistance also confer reduced susceptibility to manogepix in Candida auris ( Candidozyma auris ), Candida albicans , Candida parapsilosis , and Candida glabrata ( Nakaseomyces glabratus )

Antimicrobial Agents and Chemotherapy(2025)10.1128/aac.00680-25

N/A

0DataRank · unranked

5 citations

Hoja Patterson, Joachim Morschhäuser, Christina A. Cuomo, Nathan P. Wiederhold, P. David Rogers +1 more

Relative contributions of the ERG11VF125AL and MRR1AN647T mutations to fluconazole resistance in Clade III Candidozyma (Candida) auris clinical isolates

Clinical Microbiology and Infection(2025)10.1016/j.cmi.2025.10.009

N/A

0DataRank · unranked

2 citations

Qing Zhang, Tracy L. Peters, Jeffrey M. Rybak, Joachim Morschhäuser, Christina A. Cuomo +2 more

Mutations in TAC1B drive CDR1 and MDR1 expression and azole resistance in C. auris

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.02.11.637698

N/A

0DataRank · unranked

7 citations

Darian J. Santana, Qing Zhang, Tracy L. Peters, Jeffrey M. Rybak, Joachim Morschhäuser +3 more

Ergosterol-depleted clinical isolates of Nakaseomyces glabratus can develop multi-drug resistance without apparent fitness and virulence defects

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.28.672802

N/A

0DataRank · unranked

0 citations

Nadja Thielemann, Aina Zurita Martinez, Christoph Müller, Tom Gräfenhan, Richard Kriz +12 more

Pooled CRISPRi screening reveals fungal-specific vulnerabilities across environments and genetic backgrounds

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.64898/2025.12.19.695556

N/A

0DataRank · unranked

0 citations

Philippe C Després, Desiree Francis, Meea Fogal, Anthony Hendriks, Nicholas C Gervais +6 more

Mutations in TAC1B : a Novel Genetic Determinant of Clinical Fluconazole Resistance in Candida auris

mBio(2020)10.1128/mbio.00365-20

N/A

0DataRank · unranked

200 citations

José F. Muñoz, Katherine S. Barker, Josie E. Parker, Brooke D. Esquivel, Elizabeth L. Berkow +8 more

Evolutionary Persistence of DNA Methylation for Millions of Years after Ancient Loss of a De Novo Methyltransferase

Cell(2020)10.1016/j.cell.2019.12.012

N/A

0DataRank · unranked

153 citations

Phillip A. Dumesic, Harold Pimentel, Ammar Nasif, Caitlin I. Stoddard, Jordan E. Burke +12 more

Tracing the Evolutionary History and Global Expansion of Candida auris Using Population Genomic Analyses

mBio(2020)10.1128/mbio.03364-19

N/A

0DataRank · unranked

457 citations

José F. Muñoz, Lalitha Gade, Elizabeth L. Berkow, Li Xiao, Rory M. Welsh +20 more

An oxindole efflux inhibitor potentiates azoles and impairs virulence in the fungal pathogen Candida auris

Nature Communications(2020)10.1038/s41467-020-20183-3

N/A

0DataRank · unranked

71 citations

Kaddy Camara, Martin Daniel-Ivad, Richard Trilles, Sheila Marie Pimentel‐Elardo, Jen Fossen +17 more

Genomic diversity of the human pathogen Paracoccidioides across the South American continent

Fungal Genetics and Biology(2020)10.1016/j.fgb.2020.103395

N/A

0DataRank · unranked

64 citations

María E. Cattana, Daniel R. Matute, José F. Muñoz, Alicia Arechavala, Kristin Isbell +19 more

Understanding the Emergence of Multidrug-Resistant Candida: Using Whole-Genome Sequencing to Describe the Population Structure of Candida haemulonii Species Complex

Frontiers in Genetics(2020)10.3389/fgene.2020.00554

N/A

0DataRank · unranked

58 citations

José F. Muñoz, Mili Sheth, Darlene Wagner, Elizabeth L. Berkow, Kaitlin Forsberg +11 more

Diversity and Complexity of the Large Surface Protein Family in the Compacted Genomes of MultiplePneumocystisSpecies

mBio(2020)10.1128/mbio.02878-19

N/A

0DataRank · unranked

20 citations

Zehua Chen, Da Wei Huang, Ousmane H. Cissé, Jamie L. Rothenburger, Alice Latinne +28 more

Tracing the evolutionary history and global expansion of Candida auris using population genomic analyses

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.06.896548

N/A

0DataRank · unranked

9 citations

José F. Muñoz, Lalitha Gade, Elizabeth L. Berkow, Li Xiao, Rory M. Welsh +20 more

Mutations in TAC1B : a novel genetic determinant of clinical fluconazole resistance in C. auris

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.18.955534

N/A

0DataRank · unranked

4 citations

José F. Muñoz, Katherine S. Barker, Josie E. Parker, Brooke D. Esquivel, Elizabeth L. Berkow +8 more

Christina A. Cuomo

Indexed papers

Top data-sharing exemplar

Papers