Guo‐Wei Wei

Computer ScienceBiochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 64 papers. Top paper: “Evaluation of AlphaFold 3’s Protein–Protein Complexes for Predicting Binding Free Energy Changes upon Mutation”.

Evaluation of AlphaFold 3’s Protein–Protein Complexes for Predicting Binding Free Energy Changes upon Mutation

Journal of Chemical Information and Modeling(2024)10.1021/acs.jcim.4c00976

N/A

0.650DataRank · unranked

75 citations

Guo‐Wei Wei, JunJie Wee

Evolutionary Khovanov homology

AIMS Mathematics(2024)10.3934/math.20241277

N/A

0.345DataRank · unranked

9 citations

Jian Liu, Guo‐Wei Wei, Li Shen

ChatGPT for computational topology

Foundations of Data Science(2024)10.3934/fods.2024009

N/A

0.312DataRank · unranked

7 citations

Li Shen, Guo‐Wei Wei, Jian Liu

CAML: Commutative Algebra Machine Learning─A Case Study on Protein–Ligand Binding Affinity Prediction

Journal of Chemical Information and Modeling(2025)10.1021/acs.jcim.5c00940

N/A

0.312DataRank · unranked

7 citations

Faisal Suwayyid, Mushal Zia, JunJie Wee, Yuta Hozumi, Chun‐Long Chen +2 more

Multi-scale Jones polynomial and persistent Jones polynomial for knot data analysis

AIMS Mathematics(2025)10.3934/math.2025068

N/A

0.208DataRank · unranked

3 citations

Fengling Li, Jie Wu, Fengchun Lei, Guo‐Wei Wei, Rui Song

Persistent Sheaf Laplacian Analysis of Protein Flexibility

The Journal of Physical Chemistry B(2025)10.1021/acs.jpcb.5c01287

N/A

0.165DataRank · unranked

2 citations

Xiaoqi Wei, Hongsong Feng, Ekaterina Merkurjev, Guo‐Wei Wei, Nicole Hayes

Machine learning tools advance biophysics

Biophysical Journal(2024)10.1016/j.bpj.2024.07.036

N/A

0.165DataRank · unranked

2 citations

Guo‐Wei Wei, Tamar Schlick

AweGNN: Auto-parametrized weighted element-specific graph neural networks for molecules

Computers in Biology and Medicine(2021)10.1016/j.compbiomed.2021.104460

N/A

0DataRank · unranked

7 citations

Duc Duy Nguyen, Guo‐Wei Wei, Timothy Szocinski

CLADE: Cluster learning-assisted directed evolution

Research Square(2021)10.21203/rs.3.rs-528258/v1

N/A

0DataRank · unranked

2 citations

Jian Hu, Guo‐Wei Wei, Yuchi Qiu

Emerging Dominant SARS-CoV-2 Variants

Journal of Chemical Information and Modeling(2022)10.1021/acs.jcim.2c01352

N/A

0DataRank · unranked

45 citations

Rui Wang, Yuta Hozumi, Gengzhuo Liu, Yuchi Qiu, Xiaoqi Wei +2 more

Machine Learning Analysis of Cocaine Addiction Informed by DAT, SERT, and NET-Based Interactome Networks

Journal of Chemical Theory and Computation(2022)10.1021/acs.jctc.2c00002

N/A

0DataRank · unranked

15 citations

Kaifu Gao, Dong Chen, Li Shen, Alfred J. Robison, Edmund L. Ellsworth +2 more

Integrating transformer and autoencoder techniques with spectral graph algorithms for the prediction of scarcely labeled molecular data

Computers in Biology and Medicine(2022)10.1016/j.compbiomed.2022.106479

N/A

0DataRank · unranked

12 citations

Ekaterina Merkurjev, Guo‐Wei Wei, Nicole Hayes

Multiscale laplacian learning

Applied Intelligence(2022)10.1007/s10489-022-04333-2

N/A

0DataRank · unranked

5 citations

Duc Duy Nguyen, Guo‐Wei Wei, Ekaterina Merkurjev

Geometric algebra generation of molecular surfaces

Journal of The Royal Society Interface(2022)10.1098/rsif.2022.0117

N/A

0DataRank · unranked

4 citations

Guo‐Wei Wei, Azzam Alfarraj

Persistent spectral theory-guided protein engineering

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.18.520933

N/A

0DataRank · unranked

5 citations

Guo‐Wei Wei, Yuchi Qiu

Machine learning analysis of cocaine addiction informed by DAT, SERT, and NET-based interactome networks

arXiv (Cornell University)(2022)10.48550/arxiv.2201.00114

N/A

0DataRank · unranked

0 citations

Kaifu Gao, Dong Chen, Alfred J. Robison, Edmund L. Ellsworth, Guo‐Wei Wei +1 more

Machine Learning Methods for Small Data Challenges in Molecular Science

Chemical Reviews(2023)10.1021/acs.chemrev.3c00189

N/A

0DataRank · unranked

464 citations

Zailiang Zhu, Ekaterina Merkurjev, Ke Lü, Long Chen, Jiang Jian +5 more

Persistent spectral theory-guided protein engineering

Nature Computational Science(2023)10.1038/s43588-022-00394-y

N/A

0DataRank · unranked

59 citations

Guo‐Wei Wei, Yuchi Qiu

ChatGPT in Drug Discovery: A Case Study on Anticocaine Addiction Drug Development with Chatbots

Journal of Chemical Information and Modeling(2023)10.1021/acs.jcim.3c01429

N/A

0DataRank · unranked

52 citations

Hongsong Feng, Guo‐Wei Wei, Rui Wang

Path Topology in Molecular and Materials Sciences

The Journal of Physical Chemistry Letters(2023)10.1021/acs.jpclett.2c03706

N/A

0DataRank · unranked

37 citations

Jian Liu, Jie Wu, Guo‐Wei Wei, Feng Pan, Shing–Tung Yau +1 more

SVSBI: sequence-based virtual screening of biomolecular interactions

Communications Biology(2023)10.1038/s42003-023-04866-3

N/A

0DataRank · unranked

31 citations

Hongsong Feng, Yuchi Qiu, Guo‐Wei Wei, Li Shen

Shape Anisotropy‐Governed High‐Performance Nanomagnetosol for In Vivo Magnetic Particle Imaging of Lungs

Small(2023)10.1002/smll.202305300

N/A

0DataRank · unranked

20 citations

Jeotikanta Mohapatra, Ashley V. Makela, Hanaan Hayat, Jessi Mercedes Rodriguez, Aixia Sun +17 more

PLPCA: Persistent Laplacian-Enhanced PCA for Microarray Data Analysis

Journal of Chemical Information and Modeling(2023)10.1021/acs.jcim.3c01023

N/A

0DataRank · unranked

20 citations

Rui Wang, Guo‐Wei Wei, Sean Cottrell

Preprocessing of Single Cell RNA Sequencing Data Using Correlated Clustering and Projection

Journal of Chemical Information and Modeling(2023)10.1021/acs.jcim.3c00674

N/A

0DataRank · unranked

17 citations

Kiyoto Aramis Tanemura, Guo‐Wei Wei, Yuta Hozumi

Machine learning study of the extended drug–target interaction network informed by pain related voltage-gated sodium channels

Pain(2023)10.1097/j.pain.0000000000003089

N/A

0DataRank · unranked

17 citations

Jian Jiang, Bozheng Dou, Hongsong Feng, Jie Liu, Yueying Zhu +4 more

Multiobjective Molecular Optimization for Opioid Use Disorder Treatment Using Generative Network Complex

Journal of Medicinal Chemistry(2023)10.1021/acs.jmedchem.3c01053

N/A

0DataRank · unranked

13 citations

Rui Wang, Chang‐Guo Zhan, Guo‐Wei Wei, Hongsong Feng

Bridging Eulerian and Lagrangian Poisson–Boltzmann solvers by ESES

Journal of Computational Chemistry(2023)10.1002/jcc.27239

N/A

0DataRank · unranked

2 citations

Xin Yang, Benjamin Jones, Shan Zhao, Weihua Geng, Guo‐Wei Wei +1 more

Persistent hyperdigraph homology and persistent hyperdigraph Laplacians

arXiv (Cornell University)(2023)10.48550/arxiv.2304.00345

N/A

0DataRank · unranked

3 citations

Jian Liu, Jie Wu, Guo‐Wei Wei, Dong Chen

ChatGPT for Computational Topology

arXiv (Cornell University)(2023)10.48550/arxiv.2310.07570

N/A

0DataRank · unranked

3 citations

Shen Li, Guo‐Wei Wei, Jian LIU

Knot data analysis using multiscale Gauss link integral

ChemRxiv(2023)10.26434/chemrxiv-2023-s83vq

N/A

0DataRank · unranked

3 citations

Hongsong Feng, Fengling Li, Fengchun Lei, Jie Wu, Guo‐Wei Wei +1 more

Persistent Directed Flag Laplacian

arXiv (Cornell University)(2023)10.48550/arxiv.2312.02099

N/A

0DataRank · unranked

3 citations

Guo‐Wei Wei, Benjamin Jones

Analyzing Single Cell RNA Sequencing with Topological Nonnegative Matrix Factorization

arXiv (Cornell University)(2023)10.48550/arxiv.2310.15744

N/A

0DataRank · unranked

1 citations

Guo‐Wei Wei, Yuta Hozumi

Persistent Topological Laplacians -- a Survey

arXiv (Cornell University)(2023)10.48550/arxiv.2312.07563

N/A

0DataRank · unranked

1 citations

Guo‐Wei Wei, Xiaoqi Wei

Persistent Laplacian-enhanced Algorithm for Scarcely Labeled Data Classification

arXiv (Cornell University)(2023)10.48550/arxiv.2305.16239

N/A

0DataRank · unranked

0 citations

Ekaterina Merkurjev, Guo‐Wei Wei, Gokul Bhusal

PLPCA: Persistent Laplacian Enhanced-PCA for Microarray Data Analysis

arXiv (Cornell University)(2023)10.48550/arxiv.2306.06292

N/A

0DataRank · unranked

0 citations

Rui Wang, Guo‐Wei Wei, Sean Cottrell

Knot data analysis using multiscale Gauss link integral

arXiv (Cornell University)(2023)10.48550/arxiv.2311.12834

N/A

0DataRank · unranked

0 citations

Hongsong Feng, Fengling Li, Fengchun Lei, Jie Wu, Guo‐Wei Wei +1 more

Multiscale differential geometry learning of networks with applications to single-cell RNA sequencing data

arXiv (Cornell University)(2023)10.48550/arxiv.2312.10261

N/A

0DataRank · unranked

0 citations

Sean Cottrell, Yuta Hozumi, Guo‐Wei Wei, Hongsong Feng

Poisson-Boltzmann based machine learning (PBML) model for electrostatic analysis

arXiv (Cornell University)(2023)10.48550/arxiv.2312.11482

N/A

0DataRank · unranked

0 citations

Yongjia Xu, Xin Yang, Zixuan Cang, Weihua Geng, Guo‐Wei Wei +1 more

A review of transformer models in drug discovery and beyond

Journal of Pharmaceutical Analysis(2024)10.1016/j.jpha.2024.101081

N/A

0DataRank · unranked

60 citations

Long Chen, Ke Lü, Bozheng Dou, Chunhuan Zhang, Hongsong Feng +5 more

Hodge Decomposition of Single-Cell RNA Velocity

Journal of Chemical Information and Modeling(2024)10.1021/acs.jcim.4c00132

N/A

0DataRank · unranked

14 citations

Yiying Tong, Guo‐Wei Wei, Zhe Su

Multiscale topology in interactomic network: from transcriptome to antiaddiction drug repurposing

Briefings in Bioinformatics(2024)10.1093/bib/bbae054

N/A

0DataRank · unranked

13 citations

Guo‐Wei Wei, Tingjun Hou, Hongyan Du

Mayer-Homology Learning Prediction of Protein-Ligand Binding Affinities

Journal of Computational Biophysics and Chemistry(2024)10.1142/s2737416524500613

N/A

0DataRank · unranked

11 citations

Li Shen, Jian Liu, Guo‐Wei Wei, Hongsong Feng

Poisson-Boltzmann-based machine learning model for electrostatic analysis

Biophysical Journal(2024)10.1016/j.bpj.2024.02.008

N/A

0DataRank · unranked

9 citations

Yongjia Xu, Xin Yang, Zixuan Cang, Weihua Geng, Guo‐Wei Wei +1 more

Analyzing single cell RNA sequencing with topological nonnegative matrix factorization

Journal of Computational and Applied Mathematics(2024)10.1016/j.cam.2024.115842

N/A

0DataRank · unranked

10 citations

Guo‐Wei Wei, Yuta Hozumi

Persistent Laplacian-enhanced algorithm for scarcely labeled data classification

Machine Learning(2024)10.1007/s10994-024-06616-w

N/A

0DataRank · unranked

1 citations

Ekaterina Merkurjev, Guo‐Wei Wei, Gokul Bhusal

Position: Topological Deep Learning is the New Frontier for Relational Learning

arXiv (Cornell University)(2024)10.48550/arxiv.2402.08871

N/A

0DataRank · unranked

5 citations

Tolga Birdal, Michael M. Bronstein, Gunnar Carlsson, Justin Curry, Yue Gao +17 more

Hodge decomposition of vector fields in Cartesian grids

PubMed(2024)10.1145/3680528.3687602

N/A

0DataRank · unranked

2 citations

Yiying Tong, Guo‐Wei Wei, Zhe Su

Persistent Khovanov homology of tangles

arXiv (Cornell University)(2024)10.48550/arxiv.2409.18312

N/A

0DataRank · unranked

0 citations

Li Shen, Guo‐Wei Wei, Jian Liu

Topological data analysis and topological deep learning beyond persistent homology: a review

Artificial Intelligence Review(2025)10.1007/s10462-025-11462-w

N/A

0DataRank · unranked

7 citations

Xiang Liu, Layal Bou Hamdan, Vasileios Maroulas, Jie Wu, Gunnar Carlsson +2 more

Superionic Ionic Conductor Discovery via Multiscale Topological Learning

Journal of the American Chemical Society(2025)10.1021/jacs.5c04828

N/A

0DataRank · unranked

6 citations

Bingxu Wang, Shunning Li, Wentao Zhang, Kai Yang, Yongli Song +3 more

Multiscale Cell–Cell Interactive Spatial Transcriptomics Analysis

Advanced Science(2025)10.1002/advs.202508358

N/A

0DataRank · unranked

4 citations

Guo‐Wei Wei, Sean Cottrell

Interpretability and Representability of Commutative Algebra, Algebraic Topology, and Topological Spectral Theory for Real‐World Data

Advanced Intelligent Discovery(2025)10.1002/aidi.202500207

N/A

0DataRank · unranked

4 citations

Guo‐Wei Wei, Yiming Ren

Persistent Directed Flag Laplacian (PDFL)-Based Machine Learning for Protein–Ligand Binding Affinity Prediction

Journal of Chemical Theory and Computation(2025)10.1021/acs.jctc.5c00074

N/A

0DataRank · unranked

4 citations

Benjamin Jones, Hongsong Feng, Guo‐Wei Wei, Mushal Zia

Multiscale Differential Geometry Learning for Protein Flexibility Analysis

Journal of Computational Chemistry(2025)10.1002/jcc.70073

N/A

0DataRank · unranked

2 citations

J. Y. Zhao, Guo‐Wei Wei, Hongsong Feng

Multiscale Cell-Cell Interactive Spatial Transcriptomics Analysis

Research Square(2025)10.21203/rs.3.rs-5743704/v1

N/A

0DataRank · unranked

0 citations

Guo‐Wei Wei, Sean Cottrell

Superionic Ionic Conductor Discovery via Multiscale Topological Learning

Research Square(2025)10.21203/rs.3.rs-5627791/v1

N/A

0DataRank · unranked

0 citations

Dong Chen, Bingxu Wang, Shunning Li, Wentao Zhang, Kai Yang +3 more

Decoding SARS-CoV-2 Transmission and Evolution and Ramifications for COVID-19 Diagnosis, Vaccine, and Medicine

Journal of Chemical Information and Modeling(2020)10.1021/acs.jcim.0c00501

N/A

0DataRank · unranked

119 citations

Yuta Hozumi, Changchuan Yin, Guo‐Wei Wei, Rui Wang

Manifold Topological Deep Learning for Biomedical Data

Research Square(2025)10.21203/rs.3.rs-6149503/v1

N/A

0DataRank · unranked

0 citations

Xiang Liu, Zhe Su, Yongyi Shi, Yiying Tong, Ge Wang +1 more

Repositioning of 8565 Existing Drugs for COVID-19

The Journal of Physical Chemistry Letters(2020)10.1021/acs.jpclett.0c01579

N/A

0DataRank · unranked

110 citations

Duc Duy Nguyen, Jiahui Chen, Rui Wang, Guo‐Wei Wei, Kaifu Gao

Potentially highly potent drugs for 2019-nCoV

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.05.936013

N/A

0DataRank · unranked

69 citations

Kaifu Gao, Jiahui Chen, Rui Wang, Guo‐Wei Wei, Duc Duy Nguyen

Machine intelligence design of 2019-nCoV drugs

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.30.927889

N/A

0DataRank · unranked

66 citations

Duc Duy Nguyen, Rui Wang, Guo‐Wei Wei, Kaifu Gao

Extracting Predictive Representations from Hundreds of Millions of Molecules

The Journal of Physical Chemistry Letters(2021)10.1021/acs.jpclett.1c03058

N/A

0DataRank · unranked

62 citations

Jiaxin Zheng, Guo‐Wei Wei, Feng Pan, Dong Chen

Review of applications and challenges of quantitative systems pharmacology modeling and machine learning for heart failure

Journal of Pharmacokinetics and Pharmacodynamics(2021)10.1007/s10928-021-09785-6

N/A

0DataRank · unranked

25 citations

Yuchi Qiu, Brian J. Schmidt, Guo‐Wei Wei, Limei Cheng

Homotopy continuation for the spectra of persistent Laplacians

Foundations of Data Science(2021)10.3934/fods.2021017

N/A

0DataRank · unranked

4 citations

Guo‐Wei Wei, Xiaoqi Wei