Jacob D. Durrant

Computer ScienceBiochemistry, Genetics and Molecular BiologyMaterials Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 25 papers. Top paper: “A Multidimensional Strategy to Detect Polypharmacological Targets in the Absence of Structural and Sequence Homology”.

A Multidimensional Strategy to Detect Polypharmacological Targets in the Absence of Structural and Sequence Homology

PLoS Computational Biology(2010)10.1371/journal.pcbi.1000648

N/A

2.7DataRank · unranked

76 citations

Rommie E. Amaro, Lei Xie, Michael D. Urbaniak, Michael A. J. Ferguson, Antti Haapalainen +7 more

Adaptive laboratory evolution in S. cerevisiae highlights role of transcription factors in fungal xenobiotic resistance

Communications Biology(2022)10.1038/s42003-022-03076-7

N/A

0.652DataRank · unranked

24 citations

Madeline R. Luth, Erich Hellemann, Gregory M. Goldgof, Eddy Vigil, Prianka Kumar +27 more

ProteinVR: Web-based molecular visualization in virtual reality

PLoS Computational Biology(2020)10.1371/journal.pcbi.1007747

N/A

0DataRank · unranked

83 citations

Jan Šefčík, Yogindra Raghav, Alexander Chang, Jacob D. Durrant, Kevin C. Cassidy

LigGrep: a tool for filtering docked poses to improve virtual-screening hit rates

Journal of Cheminformatics(2020)10.1186/s13321-020-00471-2

N/A

0DataRank · unranked

20 citations

Cara T. Lwin, Jacob D. Durrant, Emily J. Ha

MutantHuntWGS: A Pipeline for Identifying Saccharomyces cerevisiae Mutations

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.16.099259

N/A

0DataRank · unranked

0 citations

Jennifer L. Walker, Patrick J. Ropp, Jacob D. Durrant, Karen M. Arndt, Mitchell A. Ellison

DeepFrag: a deep convolutional neural network for fragment-based lead optimization

Chemical Science(2021)10.1039/d1sc00163a

N/A

0DataRank · unranked

103 citations

David Ryan Koes, Jacob D. Durrant, Harrison Green

PARP1: Structural insights and pharmacological targets for inhibition

DNA repair(2021)10.1016/j.dnarep.2021.103125

N/A

0DataRank · unranked

98 citations

Bennett Van Houten, Jacob D. Durrant, Jacob O. Spiegel

Defining the Yeast Resistome through in vitro Evolution and Whole Genome Sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.17.430112

N/A

0DataRank · unranked

4 citations

Madeline R. Luth, Erich Hellemann, Gregory M. Goldgof, Eddy Vigil, Prianka Kumar +27 more

BINANA 2.0: Characterizing Protein/Ligand Interactions in Python and JavaScript

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.10.459812

N/A

0DataRank · unranked

0 citations

Neerja Garikipati, Jacob D. Durrant, Jade Young

FPocketWeb: protein pocket hunting in a web browser

Journal of Cheminformatics(2022)10.1186/s13321-022-00637-0

N/A

0DataRank · unranked

40 citations

Jacob D. Durrant, Yuri Kochnev

Novel mutation in hexokinase 2 confers resistance to 2-deoxyglucose by altering protein dynamics

PLoS Computational Biology(2022)10.1371/journal.pcbi.1009929

N/A

0DataRank · unranked

16 citations

Jennifer L. Walker, Mitchell A. Lesko, Dakshayini G. Chandrashekarappa, Martin C. Schmidt, Allyson F. O’Donnell +2 more

Open-Source Browser-Based Tools for Structure-Based Computer-Aided Drug Discovery

Molecules(2022)10.3390/molecules27144623

N/A

0DataRank · unranked

14 citations

Jacob D. Durrant, Ann Wang

Phosphate position is key in mediating transmembrane ion channel TMEM16A–phosphatidylinositol 4,5-bisphosphate interaction

Journal of Biological Chemistry(2022)10.1016/j.jbc.2022.102264

N/A

0DataRank · unranked

5 citations

Rachel E. Bainbridge, Crystal Lara‐Santos, Kayla M. Komondor, Grant J. Daskivich, Jacob D. Durrant +3 more

Prot2Prot: A Deep Learning Model for Rapid, Photorealistic Macromolecular Visualization

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.21.485218

N/A

0DataRank · unranked

3 citations

Jacob D. Durrant

FPocketWeb: Protein pocket hunting in a web browser

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.27.493797

N/A

0DataRank · unranked

3 citations

Jacob D. Durrant, Yuri Kochnev

Hexokinase 2 localizes to the nucleus in response to glucose limitation but does not regulate gene expression

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.30.518474

N/A

0DataRank · unranked

0 citations

Dakshayini G. Chandrashekarappa, Eric M. Jordahl, Katherine G. Oppenheimer, Ray W. Bowman, Chaowei Shang +4 more

From byte to bench to bedside: molecular dynamics simulations and drug discovery

BMC Biology(2023)10.1186/s12915-023-01791-z

N/A

0DataRank · unranked

58 citations

Alex M. Maldonado, Jacob D. Durrant, Mayar Ahmed

Changing course: Glucose starvation drives nuclear accumulation of Hexokinase 2 in S. cerevisiae

PLoS Genetics(2023)10.1371/journal.pgen.1010745

N/A

0DataRank · unranked

12 citations

Dakshayini G. Chandrashekarappa, Eric M. Jordahl, Katherine G. Oppenheimer, Ray W. Bowman, Chaowei Shang +4 more

Genome mining yields putative disease-associated ROMK variants with distinct defects

PLoS Genetics(2023)10.1371/journal.pgen.1011051

N/A

0DataRank · unranked

5 citations

Srikant Sarangi, Erin M. McChesney, Shaohu Sheng, Jacob D. Durrant, Aidan W. Porter +4 more

Computational and experimental analyses of alanine racemase suggest new avenues for developing allosteric small‐molecule antibiotics

Drug Development Research(2023)10.1002/ddr.22068

N/A

0DataRank · unranked

3 citations

Jacob D. Durrant, Sudipta Majumdar, Arie Van Wieren

CENsible: Interpretable Insights into Small-Molecule Binding with Context Explanation Networks

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.18.562959

N/A

0DataRank · unranked

1 citations

David Ryan Koes, Jacob D. Durrant, Roshni Bhatt

MolModa: accessible and secure molecular docking in a web browser

Nucleic Acids Research(2024)10.1093/nar/gkae406

N/A

0DataRank · unranked

27 citations

M.W. Ahmed, Alex M. Maldonado, Jacob D. Durrant, Yuri Kochnev

The chaperone PrsA2 regulates the secretion, stability, and folding of listeriolysin O during Listeria monocytogenes infection

mBio(2024)10.1128/mbio.00743-24

N/A

0DataRank · unranked

8 citations

Adriana M. Zimnicka, Allison Kumar, Jada L. George, Madeline Torres, Gerd Prehna +5 more

Teaching old docks new tricks with machine learning enhanced ensemble docking

Scientific Reports(2024)10.1038/s41598-024-71699-3

N/A

0DataRank · unranked

4 citations

Ann Wang, Jacob D. Durrant, Roshni Bhatt

Mesoscale All-Atom Influenza Virus Simulations Suggest New Substrate Binding Mechanism

ACS Central Science(2020)10.1021/acscentsci.9b01071

N/A

0DataRank · unranked

117 citations

Sarah E. Kochanek, Lorenzo Casalino, Pek U. Ieong, Abigail C. Dommer, Rommie E. Amaro +1 more