Xiangmin Xu

Neuroscience

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 7%percentile

0.165Author DataRank

Indexed papers

3in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Multiscale Spatial Transcriptomic Atlas of Human Basal Ganglia Cell-Type and Cellular Community Organization

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.64898/2025.12.02.691876

Top 70%

0.165DataRank

Top 70%2 citations

Zhiqun Tan, Ginny Wu, Sujan C. Das, Li Ren, Benjamin Esser +16 more

Papers

Driven by 59 papers — median percentile 30. Top paper: “Microglia Elimination Increases Neural Circuit Connectivity and Activity in Adult Mouse Cortex”.

Microglia Elimination Increases Neural Circuit Connectivity and Activity in Adult Mouse Cortex

Journal of Neuroscience(2020)10.1523/jneurosci.2140-20.2020

N/A

0.768DataRank · unranked

166 citations

Elizabeth E. Spangenberg, Bryan Y. Tang, Todd C. Holmes, Kim N. Green, Xiangmin Xu +1 more

Massively parallel in vivo Perturb-seq reveals cell-type-specific transcriptional networks in cortical development

Cell(2024)10.1016/j.cell.2024.04.050

N/A

0.639DataRank · unranked

70 citations

Boli Wu, Yuejia Liu, Sean K. Simmons, Kwanho Kim, Grace S. Clarke +19 more

Stress-induced plasticity of a CRH/GABA projection disrupts reward behaviors in mice

Nature Communications(2023)10.1038/s41467-023-36780-x

N/A

0.631DataRank · unranked

66 citations

Annabel K. Short, Gregory de Carvalho, Lara Taniguchi, Benjamin G. Gunn, Aidan L. Pham +7 more

Subanesthetic ketamine reactivates adult cortical plasticity to restore vision from amblyopia

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.16.994475

N/A

0.630DataRank · unranked

14 citations

Xin Qiao, Xiaoting Zheng, Yong‐Jun Liu, Lujia Chen, Hai Zhang +6 more

Noncanonical projections to the hippocampal CA3 regulate spatial learning and memory by modulating the feedforward hippocampal trisynaptic pathway

PLoS Biology(2021)10.1371/journal.pbio.3001127

N/A

0.564DataRank · unranked

42 citations

Michelle Amalraj, Crisylle Blanton, Brenda Avila, Todd C. Holmes, Douglas A. Nitz +2 more

Hippocampal neural circuit connectivity alterations in an Alzheimer's disease mouse model revealed by monosynaptic rabies virus tracing

Neurobiology of Disease(2022)10.1016/j.nbd.2022.105820

N/A

0.524DataRank · unranked

32 citations

Gocylen Gast, Xilin Su, Takashi Saito, Takaomi C. Saido, Todd C. Holmes +2 more

Identification of the velum interpositum as a meningeal-CNS route for myeloid cell trafficking into the brain

Neuron(2025)10.1016/j.neuron.2025.05.004

N/A

0.385DataRank · unranked

12 citations

Sungjin Kim, Rocio A. Barahona, Caden M. Henningfield, Kimiya Mansour, Kristen Vallejo +12 more

Octodon degus laboratory colony management principles and methods for behavioral analysis for Alzheimer’s disease neuroscience research

Frontiers in Aging Neuroscience(2025)10.3389/fnagi.2024.1517416

N/A

0.241DataRank · unranked

4 citations

Todd C. Holmes, Robert M. J. Deacon, Xiangmin Xu, Patricia Cogram, B. Maximiliano Garduño

Single-cell Multiome Analysis of Chromatin State and Transcriptome in the Human Basal Ganglia

10.64898/2026.02.03.703645

N/A

0.208DataRank · unranked

3 citations

Kai Li, Yang Xie, Guojie Zhong, Jonathan A. Rink, Cindy Tatiana Báez-Becerra +55 more

Multiscale Spatial Transcriptomic Atlas of Human Basal Ganglia Cell-Type and Cellular Community Organization

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.64898/2025.12.02.691876

Top 70%

0.165DataRank

Top 70%2 citations

Zhiqun Tan, Ginny Wu, Sujan C. Das, Li Ren, Benjamin Esser +16 more

Hippocampal neural circuit mechanisms in Alzheimer's disease revealed by viral-genetic circuit mapping

Neurobiology of Disease(2025)10.1016/j.nbd.2025.107139

N/A

0.104DataRank · unranked

1 citations

Gocylen Gast, Todd C. Holmes, Xiangmin Xu, Qiao Ye

Brain image data processing using collaborative data workflows on Texera

Frontiers in Neural Circuits(2024)10.3389/fncir.2024.1398884

N/A

0.104DataRank · unranked

1 citations

Yicong Huang, Pan Gao, Andy Thai, Atchuth Naveen Chilaparasetti, M. Gopi +3 more

PHGDH expression increases with progression of Alzheimer’s disease pathology and symptoms

Cell Metabolism(2022)10.1016/j.cmet.2022.02.008

N/A

0DataRank · unranked

37 citations

Riccardo Calandrelli, John Girardini, Zhangming Yan, Zhiqun Tan, Xiangmin Xu +3 more

Degenerate mapping of environmental location presages deficits in object-location encoding and memory in the 5xFAD mouse model for Alzheimer's disease

Neurobiology of Disease(2022)10.1016/j.nbd.2022.105939

N/A

0DataRank · unranked

23 citations

Lujia Chen, Kevin G. Johnston, Joshua Crapser, Kim N. Green, Nicole My-Linh Ha +5 more

Longitudinal dynamics of microvascular recovery after acquired cortical injury

Acta Neuropathologica Communications(2022)10.1186/s40478-022-01361-4

N/A

0DataRank · unranked

17 citations

Lujia Chen, Amandine Jullienne, Hai Zhang, Arjang Salehi, Mary Hamer +4 more

Genome Sequencing Variations in the Octodon degus, an Unconventional Natural Model of Aging and Alzheimer's Disease

Frontiers in Aging Neuroscience(2022)10.3389/fnagi.2022.894994

N/A

0DataRank · unranked

14 citations

Claudio Urra, B. Maximiliano Garduño, Agostino Bruno, Allison Kimbell, Brent Wilkinson +18 more

Tracking longitudinal population dynamics of single neuronal calcium signal using SCOUT

Cell Reports Methods(2022)10.1016/j.crmeth.2022.100207

N/A

0DataRank · unranked

13 citations

Steven F. Grieco, Hai Zhang, Suoqin Jin, Xiangmin Xu, Qing Nie +1 more

Commentary: How Do Microglia Regulate Neural Circuit Connectivity and Activity in the Adult Brain?

Neuroscience Insights(2022)10.1177/26331055211071124

N/A

0DataRank · unranked

5 citations

Kim N. Green, Todd C. Holmes, Xiangmin Xu, Yong‐Jun Liu

Inferring neuron-neuron communications from single-cell transcriptomics through NeuronChat

Nature Communications(2023)10.1038/s41467-023-36800-w

N/A

0DataRank · unranked

77 citations

Kevin G. Johnston, Honglei Ren, Xiangmin Xu, Qing Nie, Wei Zhao

Erythrocyte–brain endothelial interactions induce microglial responses and cerebral microhemorrhages in vivo

Journal of Neuroinflammation(2023)10.1186/s12974-023-02932-5

N/A

0DataRank · unranked

21 citations

Rachita K. Sumbria, Rudy Chang, Jiahong Sun, David H. Cribbs, Todd C. Holmes +3 more

Probing neural circuit mechanisms in Alzheimer’s disease using novel technologies

Molecular Psychiatry(2023)10.1038/s41380-023-02018-x

N/A

0DataRank · unranked

29 citations

Todd C. Holmes, Xiangmin Xu, Steven F. Grieco

Anatomical and molecular characterization of parvalbumin-cholecystokinin co-expressing inhibitory interneurons: implications for neuropsychiatric conditions

Molecular Psychiatry(2023)10.1038/s41380-023-02153-5

N/A

0DataRank · unranked

18 citations

Kevin G. Johnston, Pan Gao, B. Maximiliano Garduño, Bryan Y. Tang, Elsie Yi +6 more

Anatomical organization of temporally correlated neural calcium activity in the hippocampal CA1 region

iScience(2023)10.1016/j.isci.2023.106703

N/A

0DataRank · unranked

10 citations

Xiaoxiao Lin, Qiao Ye, Zoran Nenadić, Todd C. Holmes, Douglas A. Nitz +2 more

Hippocampal CA3 inhibitory neurons receive extensive noncanonical synaptic inputs from CA1 and subicular complex

The Journal of Comparative Neurology(2023)10.1002/cne.25510

N/A

0DataRank · unranked

5 citations

Neeyaz Cyrus, Brenda Avila, Todd C. Holmes, Xiangmin Xu, Xiaoxiao Lin

Intranasal Delivery of Ketamine Induces Cortical Disinhibition

eNeuro(2023)10.1523/eneuro.0107-23.2023

N/A

0DataRank · unranked

2 citations

Steven F. Grieco, Zhaoxia Yu, Todd C. Holmes, Xiangmin Xu, Xin Qiao

Inferring neuron-neuron communications from single-cell transcriptomics through NeuronChat

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.12.523826

N/A

0DataRank · unranked

6 citations

Kevin G. Johnston, Honglei Ren, Xiangmin Xu, Qing Nie, Wei Zhao

Single cell spatial transcriptomics reveals distinct patterns of dysregulation in non-neuronal and neuronal cells induced by the Trem2R47H Alzheimer’s risk gene mutation

Research Square(2023)10.21203/rs.3.rs-3656139/v1

N/A

0DataRank · unranked

4 citations

Bereket B Berackey, Kristine M. Tran, Alon Gelber, Zhaoxia Yu, Grant R. MacGregor +5 more

Multichannel bridges and NSC synergize to enhance axon regeneration, myelination, synaptic reconnection, and recovery after SCI

Research Square(2023)10.21203/rs.3.rs-3044426/v1

N/A

0DataRank · unranked

3 citations

P Sakthivel, Atena Zahedi, Dana Creasman, Rebecca A. Nishi, Courtney M. Dumont +18 more

New rabies viral resources for multi-scale neural circuit mapping

Research Square(2023)10.21203/rs.3.rs-3250124/v1

N/A

0DataRank · unranked

0 citations

Alexis Bouin, Ginny Wu, Orkide Ö. Koyuncu, Qiao Ye, Keunyoung Kim +10 more

Single-cell spatial transcriptomics reveals distinct patterns of dysregulation in non-neuronal and neuronal cells induced by the Trem2R47H Alzheimer’s risk gene mutation

Molecular Psychiatry(2024)10.1038/s41380-024-02651-0

N/A

0DataRank · unranked

37 citations

Bereket T Berackey, Kristine M. Tran, Alon Gelber, Zhaoxia Yu, Grant R. MacGregor +5 more

Distinct dynamics and intrinsic properties in ventral tegmental area populations mediate reward association and motivation

Cell Reports(2024)10.1016/j.celrep.2024.114668

N/A

0DataRank · unranked

22 citations

Eric R Szelenyi, Barbara Juarez, Alexandria D. Murry, G. I. Loginov, Catalina A. Zamorano +8 more

New rabies viral resources for multi-scale neural circuit mapping

Molecular Psychiatry(2024)10.1038/s41380-024-02451-6

N/A

0DataRank · unranked

15 citations

Ginny Wu, Orkide Ö. Koyuncu, Qiao Ye, Keunyoung Kim, Michele Wu +10 more

Monosynaptic rabies tracing reveals sex- and age-dependent dorsal subiculum connectivity alterations in an Alzheimer's disease mouse model

Journal of Neuroscience(2024)10.1523/jneurosci.1796-23.2024

N/A

0DataRank · unranked

9 citations

Gocylen Gast, Erik George Wilfley, Hanh Huynh, Chelsea C. Hays, Todd C. Holmes +2 more

Projection-specific circuits of retrosplenial cortex with differential contributions to spatial cognition

Molecular Psychiatry(2024)10.1038/s41380-024-02819-8

N/A

0DataRank · unranked

7 citations

Ali Ghafuri, Xiaojun Chen, M. Zain H. Kazmi, Douglas A. Nitz, Xiangmin Xu +1 more

How the forebrain transitions to adulthood: developmental plasticity markers in a long-lived rodent reveal region diversity and the uniqueness of adolescence

Frontiers in Neuroscience(2024)10.3389/fnins.2024.1365737

N/A

0DataRank · unranked

3 citations

Patrick Hanni, Chelsea C. Hays, Patricia Cogram, Nathan Insel, Xiangmin Xu +1 more

First International Conference on Unconventional Animal Models of Alzheimer’s Disease and Aging

Journal of Alzheimer s Disease(2024)10.3233/jad-249004

N/A

0DataRank · unranked

4 citations

B. Maximiliano Garduño, Bing Ren, Xiangmin Xu, Patricia Cogram

Epigenetic and 3D genome reprogramming during the aging of human hippocampus

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.14.618338

N/A

0DataRank · unranked

7 citations

Seo Yeon Lee, Sainath Mamde, Bing Yang, Nicole Berchtold, B. Maximiliano Garduño +16 more

Meeting report for the 2024 UC Irvine Center for neural circuit mapping conference: Brain cell types, circuits, and disorders

Molecular Psychiatry(2024)10.1038/s41380-024-02775-3

N/A

0DataRank · unranked

2 citations

Todd C. Holmes, Xiangmin Xu, Steven F. Grieco

Time-Varying ℓ 0 Optimization for Spike Inference from Multi-Trial Calcium Recordings

Data Science in Science(2024)10.1080/26941899.2024.2407770

N/A

0DataRank · unranked

0 citations

Mingyu Du, Kevin Johnston, Steven F. Grieco, Rachel Crary, John F. Guzowski +6 more

RegBoost: Enhancing mouse brain image registration using geometric priors and Laplacian interpolation

NeuroImage(2024)10.1016/j.neuroimage.2024.120981

N/A

0DataRank · unranked

0 citations

Andy Thai, Pan Gao, Xiangmin Xu, M. Gopi, Atchuth Naveen Chilaparasetti

Rewired m6A of promoter antisense RNAs in Alzheimer’s disease regulates neuronal genes in 3D nucleome

Nature Communications(2025)10.1038/s41467-025-60378-0

N/A

0DataRank · unranked

12 citations

Yuqiang Shi, Feng Xiong, Yi-Ting Chen, Xiaoyu Zhu, Elisa Carrillo +11 more

Specific targeting of brain endothelial cells using enhancer AAV vectors

Neuron(2025)10.1016/j.neuron.2025.03.031

N/A

0DataRank · unranked

7 citations

Oyshi Dey, Nayoon S. Kim, Wenhao Cao, Qiao Ye, Pan Gao +9 more

An AAV capsid proposed as microglia-targeting directs genetic expression in forebrain excitatory neurons

Cell Reports Methods(2025)10.1016/j.crmeth.2025.101054

N/A

0DataRank · unranked

3 citations

Zhiqun Tan, Bereket T Berackey, Jason K. Nguyen, Sara R. Brown, Sheng Du +6 more

Aggrecan protects against plaque accumulation and is essential for proper microglial responses to plaques

Cell Reports(2025)10.1016/j.celrep.2025.116064

N/A

0DataRank · unranked

2 citations

Nellie Kwang, Aashna R. Kono‐Soosaipillai, Giovanna Rubio Salgado, Kristine M. Tran, Yueh-Hao Lu +8 more

Unfolding neural diversity: how dynamic three-dimensional genome architecture regulates brain function and disease

Molecular Psychiatry(2025)10.1038/s41380-025-03056-3

N/A

0DataRank · unranked

4 citations

Steven F. Grieco, Todd C. Holmes, Xiangmin Xu, Brandon L. Logeman

Octodon degus: a natural animal model of aging and Alzheimer’s disease

Lab Animal(2025)10.1038/s41684-025-01602-8

N/A

0DataRank · unranked

1 citations

B. Maximiliano Garduño, Robert M. J. Deacon, Todd C. Holmes, Xiangmin Xu, Patricia Cogram +1 more

Establishing a continuum of cell types in the visual cortex

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.22.677893

N/A

0DataRank · unranked

2 citations

Fangming Xie, Salwan Butrus, Runzhe Xu, Zhiqun Tan, Ryan Gorzek +13 more

Multichannel bridges and NSC synergize to enhance axon regeneration, myelination, synaptic reconnection, and recovery after SCI

npj Regenerative Medicine(2024)10.1038/s41536-024-00356-0

N/A

0DataRank · unranked

9 citations

P Sakthivel, Atena Zahedi, Dana Creasman, Rebecca A. Nishi, Courtney M. Dumont +18 more

Viral Vectors for Neural Circuit Mapping and Recent Advances in Trans-synaptic Anterograde Tracers

Neuron(2020)10.1016/j.neuron.2020.07.010

N/A

0DataRank · unranked

118 citations

Todd C. Holmes, Min‐Hua Luo, Kevin T. Beier, Gregory D. Horwitz, Fei Zhao +5 more

Anterograde Neuronal Circuit Tracers Derived from Herpes Simplex Virus 1: Development, Application, and Perspectives

International Journal of Molecular Sciences(2020)10.3390/ijms21165937

N/A

0DataRank · unranked

13 citations

Yang Hong, Feng Xiong, Xiangmin Xu, Wenbo Zeng, Fei Zhao +2 more

Robust Population Single Neuronal Calcium Signal Extraction Using SCOUT Allows for Longitudinal Analysis of Behavior-associated Neural Ensemble Dynamics

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.26.268151

N/A

0DataRank · unranked

5 citations

Steven F. Grieco, Zhaoxia Yu, Suoqin Jin, Tong Shen, Rachel Crary +4 more

Beyond t test and ANOVA: applications of mixed-effects models for more rigorous statistical analysis in neuroscience research

Neuron(2021)10.1016/j.neuron.2021.10.030

N/A

0DataRank · unranked

585 citations

Michele Guindani, Steven F. Grieco, Lujia Chen, Todd C. Holmes, Xiangmin Xu +1 more

Spatial coding defects of hippocampal neural ensemble calcium activities in the triple-transgenic Alzheimer's disease mouse model

Neurobiology of Disease(2021)10.1016/j.nbd.2021.105562

N/A

0DataRank · unranked

28 citations

Lujia Chen, David Baglietto‐Vargas, Parsa Kamalipour, Qiao Ye, Frank M. LaFerla +4 more

Neuregulin signaling mediates the acute and sustained antidepressant effects of subanesthetic ketamine

Translational Psychiatry(2021)10.1038/s41398-021-01255-4

N/A

0DataRank · unranked

26 citations

Xin Qiao, Kevin G. Johnston, Lujia Chen, Renetta R. Nelson, Cary Lai +3 more

To deconvolve, or not to deconvolve: Inferences of neuronal activities using calcium imaging data

Journal of Neuroscience Methods(2021)10.1016/j.jneumeth.2021.109431

N/A

0DataRank · unranked

5 citations

György Lür, Xiangmin Xu, Zhaoxia Yu, Tong Shen

Non-Canonical Projections from Ventral CA1 and Subicular Complex to CA3 Augments the Feedforward Hippocampal Trisynaptic Pathway

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.01.429124

N/A

0DataRank · unranked

4 citations

Michelle Amalraj, Crisylle Blanton, Brenda Avila, Todd C. Holmes, Douglas A. Nitz +2 more

Spatial coding defects of hippocampal neural ensemble calcium activities in the 3xTg-AD Alzheimer’s disease mouse model

Research Square(2021)10.21203/rs.3.rs-550358/v1

N/A

0DataRank · unranked

0 citations

Lujia Chen, David Baglietto‐Vargas, Qiao Ye, Frank M. LaFerla, Douglas A. Nitz +3 more

Single-cell epigenome analysis reveals age-associated decay of heterochromatin domains in excitatory neurons in the mouse brain

Cell Research(2022)10.1038/s41422-022-00719-6

N/A

0DataRank · unranked

89 citations

Maria Luisa Amaral, Chenxu Zhu, Steven F. Grieco, Xiaomeng Hou, Lin Lin +6 more

Psychedelics and Neural Plasticity: Therapeutic Implications

Journal of Neuroscience(2022)10.1523/jneurosci.1121-22.2022

N/A

0DataRank · unranked

86 citations

Eero Ċastrén, Gitte M. Knudsen, Alex C. Kwan, David E. Olson, Yi Zuo +3 more

Xiangmin Xu

Indexed papers

Top data-sharing exemplar

Papers