Ken Cadwell

Also affiliated with University of Pennsylvania

Biochemistry, Genetics and Molecular BiologyDentistryMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 64 papers. Top paper: “Altered Immunity of Laboratory Mice in the Natural Environment Is Associated with Fungal Colonization”.

Altered Immunity of Laboratory Mice in the Natural Environment Is Associated with Fungal Colonization

Cell Host & Microbe(2020)10.1016/j.chom.2020.02.015

N/A

4.6DataRank · unranked

171 citations

Ying-Han Chen, Jian-Da Lin, Jacqueline M. Leung, Caroline McCauley, Joseph C. Devlin +12 more

Paneth Cell-Derived Lysozyme Defines the Composition of Mucolytic Microbiota and the Inflammatory Tone of the Intestine

Immunity(2020)10.1016/j.immuni.2020.07.010

N/A

0.821DataRank · unranked

237 citations

Iyshwarya Balasubramanian, Daniel Laubitz, Kevin Tong, Sheila Bandyopadhyay, Xiang Lin +21 more

Gut microbiome dysbiosis in antibiotic-treated COVID-19 patients is associated with microbial translocation and bacteremia

Nature Communications(2022)10.1038/s41467-022-33395-6

N/A

0.791DataRank · unranked

194 citations

Mericien Venzon, Jon Klein, Jordan E. Axelrad, Chenzhen Zhang, Alexis Sullivan +81 more

Antimicrobial overproduction sustains intestinal inflammation by inhibiting Enterococcus colonization

Cell Host & Microbe(2023)10.1016/j.chom.2023.08.002

N/A

0.626DataRank · unranked

64 citations

T. G. Heaney, Mariya London, Yi Ding, Gregory Putzel, Frank Yeung +16 more

A neonatal mouse model characterizes transmissibility of SARS-CoV-2 variants and reveals a role for ORF8

Nature Communications(2023)10.1038/s41467-023-38783-0

N/A

0.557DataRank · unranked

13 citations

Grace O. Ciabattoni, Ralf Duerr, Ana M. Valero-Jimenez, Stephen T. Yeung, Keaton M. Crosse +14 more

Pathogen Species Is Associated With Mortality in Nosocomial Bloodstream Infection in Patients With COVID-19

Open Forum Infectious Diseases(2022)10.1093/ofid/ofac083

N/A

0.551DataRank · unranked

10 citations

Thomas D. Filardo, Sarah Conderino, Samuel J. Magaziner, Yanina Dubrovskaya, Kenneth Inglima +10 more

Gut microbiome of helminth-infected indigenous Malaysians is context dependent

Microbiome(2022)10.1186/s40168-022-01385-x

N/A

0.524DataRank · unranked

32 citations

Yi Xian Er, Alice V. Easton, Nan Jiun Yap, Ii Li Lee, Joseph C. Devlin +15 more

Genetic and environmental interactions contribute to immune variation in rewilded mice

Nature Immunology(2024)10.1038/s41590-024-01862-5

N/A

0.442DataRank · unranked

18 citations

Alexander E. Downie, Nina Howard, Ramya S. Barre, Kasalina N. Kiwanuka, Kimberly Zaldaña +12 more

Mammary intraepithelial lymphocytes and intestinal inputs shape T cell dynamics in lactogenesis

Nature Immunology(2025)10.1038/s41590-025-02218-3

N/A

0.432DataRank · unranked

11 citations

Eleni Phung, Xutong Gong, Pilar Baldominos, Silvia Galván-Peña, Ian Magill +93 more

Tofacitinib Uptake by Patient-Derived Intestinal Organoids Predicts Individual Clinical Responsiveness

Gastroenterology(2024)10.1053/j.gastro.2024.07.035

N/A

0.396DataRank · unranked

13 citations

David Hudesman, Drew R. Jones, P’ng Loke, Jordan E. Axelrad, Ken Cadwell +7 more

ACE2-containing defensosomes serve as decoys to inhibit SARS-CoV-2 infection

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.17.473223

N/A

0.312DataRank · unranked

7 citations

Maren de Vries, Juan Gago, Kristen Dancel-Manning, Joseph Sall, William J. Rice +9 more

Tofacitinib uptake by patient-derived intestinal organoids predicts individual clinical responsiveness

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.02.583137

N/A

0.269DataRank · unranked

5 citations

Defne Ercelen, Jing Yu Carolina Cen Feng, Sakteesh Gurunathan, Chaoting Zhou, Aryeh Korman +7 more

Tonic type I interferon signaling optimizes the antiviral function of plasmacytoid dendritic cells

Nature Immunology(2025)10.1038/s41590-025-02279-4

N/A

0.269DataRank · unranked

5 citations

Raul A. Maqueda‐Alfaro, Hai Ni, Fernando Bandeira Sulczewski, Anna Eichinger, Eduardo Esteva +20 more

Genetic and Environmental interactions contribute to immune variation in rewilded mice

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.17.533121

N/A

0.241DataRank · unranked

4 citations

Alexander E. Downie, Nina Howard, Ramya S. Barre, Kasalina N. Kiwanuka, Kimberly Zaldaña +12 more

Safety of administering biologics to IBD patients at an outpatient infusion center In New York City during the COVID-19 pandemic: Sars-CoV-2 seroprevalence and clinical and social characteristics

medRxiv(2021)10.1101/2021.03.15.21253615

N/A

0.165DataRank · unranked

2 citations

Stephanie Gold, Emma K. Accorsi, Tori L. Cowger, Dean A. Wiseman, Reema Navalurkar +9 more

Social association predicts immunological similarity in rewilded mice

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.15.532825

N/A

0.165DataRank · unranked

2 citations

Oyebola O. Oyesola, Ramya S. Barre, Quentin Caudron, Y.-H. Chen, Emily Jane Dennis +12 more

Microbial byproducts determine reproductive fitness of free-living and parasitic nematodes

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.02.454806

N/A

0DataRank · unranked

4 citations

Ritika Das, D Luciano, Julia Burnett, Hyun Shin Park, Joseph C. Devlin +5 more

Playing dirty with virus transmission

The Journal of Experimental Medicine(2021)10.1084/jem.20212358

N/A

0DataRank · unranked

0 citations

Ken Cadwell, Christin Herrmann

Gut microbiome dysbiosis during COVID-19 is associated with increased risk for bacteremia and microbial translocation

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.15.452246

N/A

0DataRank · unranked

15 citations

Lucie Bernard, Jon Klein, Jordan E. Axelrad, Chenzhen Zhang, Grant Hussey +19 more

Gut microbiome dysbiosis during COVID-19 is associated with increased risk for bacteremia and microbial translocation.

Research Square(2021)10.21203/rs.3.rs-726620/v1

N/A

0DataRank · unranked

43 citations

Lucie Bernard, Jon Klein, Jordan E. Axelrad, Grant Hussey, Alexis Sullivan +16 more

ACE2-containing defensosomes serve as decoys to inhibit SARS-CoV-2 infection

PLoS Biology(2022)10.1371/journal.pbio.3001754

N/A

0DataRank · unranked

30 citations

Maren de Vries, Juan Gago, Kristen Dancel-Manning, Joseph Sall, William J. Rice +11 more

Efficacy of triple dose albendazole treatment for soil-transmitted helminth infections

PLoS ONE(2022)10.1371/journal.pone.0272821

N/A

0DataRank · unranked

29 citations

Soo Ching Lee, Yi Xian Er, Nan Jiun Yap, Romano Ngui, Alice V. Easton +8 more

Clostridia isolated from helminth-colonized humans promote the life cycle of Trichuris species

Cell Reports(2022)10.1016/j.celrep.2022.111725

N/A

0DataRank · unranked

29 citations

Ze Chen, Soo Ching Lee, Amicha Robertson, Rafaela Saes Thur, Julia Sproch +13 more

Interactions of Autophagy and the Immune System in Health and Diseases

Autophagy Reports(2022)10.1080/27694127.2022.2119743

N/A

0DataRank · unranked

23 citations

Xiaomin Yao, Aude Lavedrine, Christophe Viret, Jacob Dockterman, Swati Chauhan +11 more

Atovaquone and Berberine Chloride Reduce SARS-CoV-2 Replication In Vitro

Viruses(2021)10.3390/v13122437

N/A

0DataRank · unranked

17 citations

María G. Noval, Maria E. Kaczmarek, Kyung Ku Jang, Sara A. Thannickal, Angelica C Kottkamp +5 more

Into the wild: How exposure to wild or domesticated fungi shapes immune responses in mice

PLoS Pathogens(2022)10.1371/journal.ppat.1010841

N/A

0DataRank · unranked

2 citations

Ken Cadwell, Ying-Han Chen

Gut Microbiome of Helminth Infected Indigenous Malaysians Is Context Dependent

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.21.477162

N/A

0DataRank · unranked

4 citations

Yi Xian Er, Alice V. Easton, Nan Jiun Yap, Ii Li Lee, Joseph C. Devlin +13 more

Defensosomes: a new role for autophagy proteins in innate immune defense

Autophagy(2022)10.1080/15548627.2022.2146894

N/A

0DataRank · unranked

4 citations

Victor J. Torres, Ken Cadwell, Krystal L. Ching

Enteric viruses evoke broad host immune responses resembling those elicited by the bacterial microbiome

Cell Host & Microbe(2021)10.1016/j.chom.2021.03.015

N/A

0DataRank · unranked

73 citations

T. G. Heaney, Adriana Rosas-Villegas, Jessica A. Neil, Serre-Yu Wong, Judy J. Brown +6 more

Rewilding of laboratory mice enhances granulopoiesis and immunity through intestinal fungal colonization

Science Immunology(2023)10.1126/sciimmunol.add6910

N/A

0DataRank · unranked

51 citations

Frank Yeung, Keenan A. Lacey, Kimberly Zaldaña, Jian-Da Lin, Gavyn Chern Wei Bee +13 more

Mitigation of Osteoclast‐Mediated Arthritic Bone Remodeling By Short Chain Fatty Acids

Arthritis & Rheumatology(2023)10.1002/art.42765

N/A

0DataRank · unranked

43 citations

Briana J. Mullins, Alannah Lejeune, Ellie Ivanova, Jong Shin, Sofia Bajwa +5 more

Bacterial contact induces polar plug disintegration to mediate whipworm egg hatching

PLoS Pathogens(2023)10.1371/journal.ppat.1011647

N/A

0DataRank · unranked

15 citations

Joseph Sall, Mericien Venzon, Janet J. Olivas, Xuhui Zheng, Michael Cammer +11 more

Single-Cell Transcriptional Survey of Ileal-Anal Pouch Immune Cells From Ulcerative Colitis Patients

Gastroenterology(2021)10.1053/j.gastro.2020.12.030

N/A

0DataRank · unranked

87 citations

Jordan E. Axelrad, Ashley M. Hine, Shannon Chang, Suparna A. Sarkar, Jian-Da Lin +5 more

Beyond antiviral: Interferon induced by bacteria maintains tolerance in the gut

The Journal of Experimental Medicine(2023)10.1084/jem.20232011

N/A

0DataRank · unranked

2 citations

Ken Cadwell, Yi Yang

Serologic Response to Messenger RNA Coronavirus Disease 2019 Vaccines in Inflammatory Bowel Disease Patients Receiving Biologic Therapies

Gastroenterology(2021)10.1053/j.gastro.2021.04.025

N/A

0DataRank · unranked

141 citations

Rebekah E. Dixon, Vicky Martinez Pazos, Sacha Gnjatic, Jean‐Frédéric Colombel, Ken Cadwell +37 more

Antimicrobial overproduction sustains intestinal inflammation by inhibiting Enterococcus colonization

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.29.526128

N/A

0DataRank · unranked

2 citations

T. G. Heaney, Mariya London, Yi Ding, Frank Yeung, Defne Ercelen +8 more

Bacterial contact induces polar plug disintegration to mediate whipworm egg hatching

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.13.532458

N/A

0DataRank · unranked

2 citations

Joseph Sall, Mericien Venzon, Janet J. Olivas, Xuhui Zheng, Michael Cammer +8 more

Improving protective humoral immunity at mucosal sites: the regulation and maintenance of IgA-producing plasma cells in the gut 3400

The Journal of Immunology(2025)10.1093/jimmun/vkaf283.1211

N/A

0DataRank · unranked

0 citations

Timothy C. Borbet, Tate Morrison, Thomas Boehringer, Janet J. Olivas, Tenny Mudianto +6 more

Functional characterization of helminth-associated Clostridiales reveals covariates of Treg differentiation

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.05.543751

N/A

0DataRank · unranked

0 citations

Alannah Lejeune, Defne Ercelen, Wen‐Bing Jin, Alan Varghese, P’ng Loke +4 more

Sphingosine 1-phosphate receptor 1 inhibition induces a pro-apoptotic signaling cascade in T cells

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.21.554104

N/A

0DataRank · unranked

0 citations

Victoria M. Hallisey, Ethan Y.S. Zhu, Martyna Okuniewska, Ken Cadwell, Jerry E. Chipuk +3 more

The hyphal-specific toxin candidalysin promotes fungal gut commensalism

Nature(2024)10.1038/s41586-024-07142-4

N/A

0DataRank · unranked

109 citations

Shabnam Sircaik, Joseph Dainis, Pallavi Kakade, Swathi Penumutchu, Liam McDonough +15 more

S1PR1 inhibition induces proapoptotic signaling in T cells and limits humoral responses within lymph nodes

Journal of Clinical Investigation(2024)10.1172/jci174984

N/A

0DataRank · unranked

23 citations

Victoria M. Hallisey, Ethan Y.S. Zhu, Martyna Okuniewska, Ken Cadwell, Jerry E. Chipuk +3 more

Transcriptional Atlas of Ileal-Anal Pouch Immune Cells from Ulcerative Colitis Patients

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.31.231308

N/A

0DataRank · unranked

0 citations

Jordan E. Axelrad, Ashley M. Hine, Shannon Chang, Suparna A. Sarkar, Jian-Da Lin +5 more

SARS-CoV-2 infection predisposes patients to coinfection with Staphylococcus aureus

mBio(2024)10.1128/mbio.01667-24

N/A

0DataRank · unranked

15 citations

Lucie Bernard, Ashley Dumont, Ana Mayela Valero Jimenez, Gregory Putzel, Juan Gago +32 more

An intestinal organoid–based platform that recreates susceptibility to T-cell–mediated tissue injury

Blood(2020)10.1182/blood.2019004116

N/A

0DataRank · unranked

60 citations

Ashley M. Hine, Yusuke Shono, Eugene Rudensky, Amina Lazrak, Frank Yeung +22 more

Assessing immune phenotypes using simple proxy measures: promise and limitations

Discovery Immunology(2024)10.1093/discim/kyae010

N/A

0DataRank · unranked

8 citations

Ramya S. Barre, Annie Robinson, Jennie Yang, Ying-Han Chen, Jian-Da Lin +6 more

Functional characterization of helminth-associated Clostridiales reveals covariates of Treg differentiation

Microbiome(2024)10.1186/s40168-024-01793-1

N/A

0DataRank · unranked

5 citations

Octavio Mondragón-Palomino, Alannah Lejeune, Defne Ercelen, Wen‐Bing Jin, Alan Varghese +5 more

Microbiota and metabolic adaptation shape Staphylococcus aureus virulence and antimicrobial resistance during intestinal colonization

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.11.593044

N/A

0DataRank · unranked

8 citations

Miranda Pawline, Alejandro Pironti, Sabrina M. Morales, Andrew I. Perault, Robert J. Ulrich +14 more

Sex-dependent gastrointestinal colonization resistance to MRSA is microbiota and Th17 dependent

eLife(2024)10.7554/elife.101606

N/A

0DataRank · unranked

6 citations

Chunyi Zhou, Defne Ercelen, Gregory Putzel, Xiaomin Yao, Alyson R Guy +7 more

A single early-in-life antibiotic course increases susceptibility to DSS-induced colitis

Genome Medicine(2020)10.1186/s13073-020-00764-z

N/A

0DataRank · unranked

53 citations

Victoria Ruiz, Thomas Battaglia, Joseph Xu, Claire Roubaud‐Baudron, Ken Cadwell +3 more

Sex-dependent gastrointestinal colonization resistance to MRSA is microbiota and Th17 dependent

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.17.603994

N/A

0DataRank · unranked

0 citations

Chunyi Zhou, Defne Ercelen, Gregory Putzel, Xiaomin Yao, Alyson R Guy +7 more

Gene–environment interactions shape the host–microbial interface in inflammatory bowel disease

Nature Immunology(2025)10.1038/s41590-025-02197-5

N/A

0DataRank · unranked

23 citations

P’ng Loke, Ken Cadwell

Rewilding Nod2 and Atg16l1 Mutant Mice Uncovers Genetic and Environmental Contributions to Microbial Responses and Immune Cell Composition

Cell Host & Microbe(2020)10.1016/j.chom.2020.03.001

N/A

0DataRank · unranked

90 citations

Joseph C. Devlin, Frank Yeung, Caroline McCauley, Jacqueline M. Leung, Ying-Han Chen +8 more

Autophagy and Bacterial infections

Autophagy Reports(2025)10.1080/27694127.2025.2542904

N/A

0DataRank · unranked

8 citations

Clara Abraham, Shai Bel, Santosh Chauhan, Jörn Coers, María Isabel Colombo +16 more

Rewilding catalyzes maturation of the humoral immune system

Science Advances(2025)10.1126/sciadv.ads2364

N/A

0DataRank · unranked

13 citations

Kimberly Zaldaña, Frank Yeung, Ivan Vujkovic-Cvijin, Alexander E. Downie, Jian-Da Lin +13 more

Heterozygosity for Crohn’s disease risk allele of ATG16L1 promotes unique protein interactions and protects against bacterial infection

Immunity(2025)10.1016/j.immuni.2025.04.023

N/A

0DataRank · unranked

7 citations

Eugene Rudensky, Patricia Martin, Brittany Miller, Isabel Vargas, Erin E. Zwack +8 more

Effects of Intestinal Fungi and Viruses on Immune Responses and Inflammatory Bowel Diseases

Gastroenterology(2020)10.1053/j.gastro.2020.06.100

N/A

0DataRank · unranked

124 citations

Ken Cadwell, Iliyan D. Iliev

Goblet Cell Loss Linked to NOD2 and Secondary Resection in Crohn’s Disease Is Induced by Dysbiosis and Epithelial MyD88

Cellular and Molecular Gastroenterology and Hepatology(2025)10.1016/j.jcmgh.2025.101533

N/A

0DataRank · unranked

2 citations

María Manuela Estevinho, T. G. Heaney, A. Marshall, Elisabeth Giselbrecht, Scott G. Daniel +13 more

Pharmacological reduction of neutrophil infiltration reduces Clostridioides difficile infection severity

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.30.685526

N/A

0DataRank · unranked

1 citations

Joshua Soto Ocaña, Alexa Semon, Tao-You Zhou, Emma E. Furth, Gavyn Chern Wei Bee +7 more

Sex-dependent gastrointestinal colonization resistance to MRSA is microbiota and Th17 dependent

eLife(2025)10.7554/elife.101606.3

N/A

0DataRank · unranked

0 citations

Chunyi Zhou, Defne Ercelen, Gregory Putzel, Xiaomin Yao, Alyson R Guy +7 more

Genomic specificity of anti-mouse TCR mAbs determined by single-cell RNAseq

The Journal of Immunology(2025)10.1093/jimmun/vkaf094

N/A

0DataRank · unranked

0 citations

Val Piekarsa, Sofia Kossida, Joshua Croteau, Amy Huei‐Yi Lee, Robert Balderas +85 more

MAIT cell enrichment in Lynch syndrome is associated with immune surveillance and colorectal cancer risk

Research Square(2025)10.21203/rs.3.rs-7273425/v1

N/A

0DataRank · unranked

0 citations

Hairu Yang, Michaela Dungan, Keely A. Beyries, Xin Wang, R. Kilpatrick +11 more

Discovery Stack Pilot: Feasibility and Outcomes of a Scientist-Designed Peer Review Model Separating Quality and Impact

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.31.685758

N/A

0DataRank · unranked

0 citations

Beiyun C. Liu, Michael S. Kuhns, Daniel Mucida, Isabella Rauch, Lauren B. Rodda +12 more

Variable susceptibility of intestinal organoid-derived monolayers to SARS-CoV-2 infection

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.16.452680

N/A

0DataRank · unranked

3 citations

Maria E. Kaczmarek, Simone Dallari, Ying-Han Chen, Takuya Tada, Jordan E. Axelrad +4 more