Aparna Nathan

Biochemistry, Genetics and Molecular BiologyImmunology and MicrobiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 6%percentile

0.204Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Dynamic regulatory elements in single-cell multimodal data capture autoimmune disease heritability and implicate key immune cell states

medRxiv(2023)10.1101/2023.02.24.23286364

Top 65%

0.204DataRank

Top 65%2 citations

Kathryn Weinand, Aparna Nathan, Saori Sakaue, Accelerating Medicines Partnership RA/SLE Program and Network, Laura T. Donlin +5 more

Papers

Driven by 37 papers — median percentile 35. Top paper: “Granzyme K activates the entire complement cascade”.

Granzyme K activates the entire complement cascade

Nature(2025)10.1038/s41586-025-08713-9

N/A

1.5DataRank · unranked

118 citations

Erin Theisen, Fan Zhang, Aparna Nathan, Madison L. Fairfield, Karishma Vijay Rupani +89 more

Tissue-specific enhancer–gene maps from multimodal single-cell data identify causal disease alleles

Nature Genetics(2024)10.1038/s41588-024-01682-1

N/A

0.972DataRank · unranked

52 citations

Kathryn Weinand, Shakson Isaac, Kushal K. Dey, Karthik A. Jagadeesh, Masahiro Kanai +86 more

Dynamic regulatory elements in single-cell multimodal data capture autoimmune disease heritability and implicate key immune cell states

medRxiv(2023)10.1101/2023.02.24.23286364

Top 65%

0.204DataRank

Top 65%2 citations

Kathryn Weinand, Aparna Nathan, Saori Sakaue, Accelerating Medicines Partnership RA/SLE Program and Network, Laura T. Donlin +5 more

Multimodal memory T cell profiling identifies a reduction in a polyfunctional Th17 state associated with tuberculosis progression

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.23.057828

N/A

0DataRank · unranked

7 citations

Jessica I. Beynor, Yuriy Baglaenko, Sara Suliman, Kazuyoshi Ishigaki, Samira Asgari +12 more

Efficient and precise single-cell reference atlas mapping with Symphony

Nature Communications(2021)10.1038/s41467-021-25957-x

N/A

0DataRank · unranked

251 citations

Aparna Nathan, Kathryn Weinand, Fan Zhang, Nghia Millard, Laurie Rumker +4 more

IFN-γ and TNF-α drive a CXCL10+ CCL2+ macrophage phenotype expanded in severe COVID-19 lungs and inflammatory diseases with tissue inflammation

Genome Medicine(2021)10.1186/s13073-021-00881-3

N/A

0DataRank · unranked

236 citations

Joseph Mears, Lorien Shakib, Jessica I. Beynor, Sara Shanaj, Ilya Korsunsky +4 more

Multimodally profiling memory T cells from a tuberculosis cohort identifies cell state associations with demographics, environment and disease

Nature Immunology(2021)10.1038/s41590-021-00933-1

N/A

0DataRank · unranked

116 citations

Jessica I. Beynor, Yuriy Baglaenko, Sara Suliman, Kazuyoshi Ishigaki, Samira Asgari +14 more

Deep transcriptome sequencing of subgenual anterior cingulate cortex reveals cross-diagnostic and diagnosis-specific RNA expression changes in major psychiatric disorders

Neuropsychopharmacology(2021)10.1038/s41386-020-00949-5

N/A

0DataRank · unranked

43 citations

Stefano Marenco, Kory R. Johnson, Ningping Feng, Kevin Zhu, Anton Schulmann +16 more

Maximizing statistical power to detect differentially abundant cell states with scPOST

Cell Reports Methods(2021)10.1016/j.crmeth.2021.100120

N/A

0DataRank · unranked

3 citations

Ilya Korsunsky, Kathryn Weinand, Chamith Y. Fonseka, Aparna Nathan, Joyce B. Kang +2 more

Modeling memory T cell states at single-cell resolution identifies in vivo state-dependence of eQTLs influencing disease

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.29.454316

N/A

0DataRank · unranked

5 citations

Samira Asgari, Kazuyoshi Ishigaki, Tiffany Amariuta, Yang Luo, Jessica I. Beynor +8 more

Repertoire analyses reveal T cell antigen receptor sequence features that influence T cell fate

Nature Immunology(2022)10.1038/s41590-022-01129-x

N/A

0DataRank · unranked

83 citations

Joyce B. Kang, Aparna Nathan, Kristen E. Pauken, A. Helena Jonsson, Deepak A. Rao +4 more

High incidence of proliferative and membranous nephritis in SLE patients with low proteinuria in the Accelerating Medicines Partnership

Lara D. Veeken(2022)10.1093/rheumatology/keac067

N/A

0DataRank · unranked

32 citations

Jessica Li, Andrea Fava, Kristina Deonaraine, David Wofsy, Judith A. James +95 more

Cellular deconstruction of inflamed synovium defines diverse inflammatory phenotypes in rheumatoid arthritis

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.25.481990

N/A

0DataRank · unranked

30 citations

A. Helena Jonsson, Aparna Nathan, Kevin Wei, Nghia Millard, Qian Xiao +80 more

Immunosuppression causes dynamic changes in expression QTLs in psoriatic skin

medRxiv(2022)10.1101/2022.10.14.22281091

N/A

0DataRank · unranked

1 citations

Joseph Mears, Aparna Nathan, Kazuyoshi Ishigaki, Yuriy Baglaenko, Noha Lim +8 more

Methods and Insights from Single-Cell Expression Quantitative Trait Loci

Annual Review of Genomics and Human Genetics(2023)10.1146/annurev-genom-101422-100437

N/A

0DataRank · unranked

49 citations

Alessandro Raveane, Aparna Nathan, Nicole Soranzo, Soumya Raychaudhuri, Joyce B. Kang

Mapping the dynamic genetic regulatory architecture of HLA genes at single-cell resolution

Nature Genetics(2023)10.1038/s41588-023-01586-6

N/A

0DataRank · unranked

43 citations

Amber Shen, Saisriram Gurajala, Aparna Nathan, Laurie Rumker, Vitor R. C. Aguiar +95 more

Dynamic regulatory elements in single-cell multimodal data implicate key immune cell states enriched for autoimmune disease heritability

Nature Genetics(2023)10.1038/s41588-023-01577-7

N/A

0DataRank · unranked

30 citations

Kathryn Weinand, Aparna Nathan, Saori Sakaue, Martin Jinye Zhang, Accelerating Medicines Partnership RA/SLE Program and Network +6 more

Immunosuppression causes dynamic changes in expression QTLs in psoriatic skin

Nature Communications(2023)10.1038/s41467-023-41984-2

N/A

0DataRank · unranked

12 citations

Joseph Mears, Aparna Nathan, Kazuyoshi Ishigaki, Yuriy Baglaenko, Noha Lim +8 more

Clonal associations of lymphocyte subsets and functional states revealed by single cell antigen receptor profiling of T and B cells in rheumatoid arthritis synovium

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.18.533282

N/A

0DataRank · unranked

12 citations

Aaron B. Wagner, Nida Meednu, Fan Zhang, A. Helena Jonsson, Kevin Wei +19 more

The Chromatin Landscape of Pathogenic Transcriptional Cell States in Rheumatoid Arthritis

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.07.536026

N/A

0DataRank · unranked

12 citations

Saori Sakaue, Aparna Nathan, A. Helena Jonsson, Fan Zhang, Gerald F. Watts +9 more

Mapping the dynamic genetic regulatory architecture of HLA genes at single-cell resolution

medRxiv(2023)10.1101/2023.03.14.23287257

N/A

0DataRank · unranked

10 citations

Amber Shen, Saori Sakaue, Yang Luo, Saisriram Gurajala, Aparna Nathan +23 more

High-dimensional phenotyping to define the genetic basis of cellular morphology

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.09.522731

N/A

0DataRank · unranked

7 citations

Jatin Arora, Samira Asgari, Beth A. Cimini, Emily Peirent, Dhara Liyanage +12 more

The T cell receptor sequence influences the likelihood of T cell memory formation

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.20.549939

N/A

0DataRank · unranked

5 citations

Aparna Nathan, Laurie Rumker, Michael E. Birnbaum, Soumya Raychaudhuri, Kaitlyn A. Lagattuta

History of tuberculosis disease is associated with genetic regulatory variation in Peruvians

Andalucía Económica(2023)10.1101/2023.06.20.23291558

N/A

0DataRank · unranked

0 citations

Victor E. Nieto-Caballero, Samira Asgari, Kattya Lopez, Sarah K. Iwany, Yang Luo +14 more

Clonal associations between lymphocyte subsets and functional states in rheumatoid arthritis synovium

Nature Communications(2024)10.1038/s41467-024-49186-0

N/A

0DataRank · unranked

55 citations

Aaron B. Wagner, Nida Meednu, Ruoqiao Huiyi Wang, Fan Zhang, Jabea Cyril Ekabe +84 more

High-dimensional phenotyping to define the genetic basis of cellular morphology

Nature Communications(2024)10.1038/s41467-023-44045-w

N/A

0DataRank · unranked

53 citations

Jatin Arora, Samira Asgari, Beth A. Cimini, Ajay Nadig, Emily Peirent +14 more

The chromatin landscape of pathogenic transcriptional cell states in rheumatoid arthritis

Nature Communications(2024)10.1038/s41467-024-48620-7

N/A

0DataRank · unranked

39 citations

Saori Sakaue, Aparna Nathan, A. Helena Jonsson, Fan Zhang, Gerald F. Watts +82 more

Identifying genetic variants that influence the abundance of cell states in single-cell data

Nature Genetics(2024)10.1038/s41588-024-01909-1

N/A

0DataRank · unranked

18 citations

Saori Sakaue, Yakir Reshef, Joyce B. Kang, Seyhan Yazar, José Alquicira-Hernández +8 more

The T cell receptor sequence influences the likelihood of T cell memory formation

Cell Reports(2024)10.1016/j.celrep.2024.115098

N/A

0DataRank · unranked

9 citations

Ayano C. Kohlgruber, Nouran S. Abdelfattah, Aparna Nathan, Laurie Rumker, Michael E. Birnbaum +3 more

Estimating the sensitivity of genomic newborn screening for treatable inherited metabolic disorders

Genetics in Medicine(2024)10.1016/j.gim.2024.101284

N/A

0DataRank · unranked

8 citations

Aparna Nathan, Hannah Park, Robert C. Green, Monica H. Wojcik, Nina B. Gold +1 more

Opportunities and considerations for using artificial intelligence in bioinformatics education

Bioinformatics Advances(2024)10.1093/bioadv/vbaf169

N/A

0DataRank · unranked

2 citations

Aparna Nathan, Michelle D. Brazas, Manoj Kandpal, Aida Miró-Herrans, Adam J. Kleinschmit +13 more

History of tuberculosis disease is associated with genetic regulatory variation in Peruvians

PLoS Genetics(2024)10.1371/journal.pgen.1011313

N/A

0DataRank · unranked

4 citations

Josephine F. Reijneveld, Angel Ruvalcaba, Gabriel Innocenzi, Nalin Abeydeera, Samira Asgari +19 more

Reproducible single cell annotation of programs underlying T-cell subsets, activation states, and functions

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.03.592310

N/A

0DataRank · unranked

18 citations

Michelle Curtis, Ryan Agnew, Kathryn Weinand, Aparna Nathan, Yuriy Baglaenko +5 more

BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain

Cell Systems(2020)10.1016/j.cels.2020.03.003

N/A

0DataRank · unranked

87 citations

Peter E.A. Ash, Sadhna Phanse, Florian Goebels, Lucas ZhongMing Hu, Siwei Chen +30 more

Modeling heterogeneity in single-cell perturbation states enhances detection of response eQTLs

Nature Genetics(2025)10.1038/s41588-025-02344-6

N/A

0DataRank · unranked

3 citations

Aparna Nathan, Joyce B. Kang, Laurie Rumker, Hyunsun Lee, Soumya Raychaudhuri +1 more

IFN- γ and TNF- α drive a CXCL10 + CCL2 + macrophage phenotype expanded in severe COVID-19 and other diseases with tissue inflammation

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.05.238360

N/A

0DataRank · unranked

31 citations

Joseph Mears, Lorien Shakib, Jessica I. Beynor, Sara Shanaj, Ilya Korsunsky +4 more

Efficient and precise single-cell reference atlas mapping with Symphony

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.18.389189

N/A

0DataRank · unranked

31 citations

Aparna Nathan, Fan Zhang, Nghia Millard, Laurie Rumker, D. Branch Moody +3 more

Aparna Nathan

Indexed papers

Top data-sharing exemplar

Papers