John F. Rawls

Also affiliated with Cancer Institute (WIA), Laboratory of Molecular Genetics, MicroBio Engineering (United States), Duke Medical Center, Duke Cancer Institute

Biochemistry, Genetics and Molecular BiologyMedicineNursingSocial Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 62 papers. Top paper: “Zebrafish are resilient to the loss of major diacylglycerol acyltransferase enzymes”.

Zebrafish are resilient to the loss of major diacylglycerol acyltransferase enzymes

Journal of Biological Chemistry(2024)10.1016/j.jbc.2024.107973

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0.250DataRank · unranked

4 citations

Monica R. Hensley, Meng‐Chieh Shen, Hsiu-Yi Lu, Vanessa H. Quinlivan, Elisabeth M. Busch‐Nentwich +3 more

Short-Chain Fatty Acid Production by Gut Microbiota from Children with Obesity Differs According to Prebiotic Choice and Bacterial Community Composition

mBio(2020)10.1128/mbio.00914-20

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0DataRank · unranked

100 citations

Justin D. Silverman, Holly K. Dressman, Zhengzheng Wei, Eric P. Dallow, Sarah Armstrong +4 more

RSPO3 impacts body fat distribution and regulates adipose cell biology in vitro

Nature Communications(2020)10.1038/s41467-020-16592-z

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0DataRank · unranked

70 citations

James E. N. Minchin, Katherine E. Pinnick, Manu Verma, Marijana Todorčević, Nathan Denton +12 more

Feeling the Burn: Intestinal Epithelial Cells Modify Their Lipid Metabolism in Response to Bacterial Fermentation Products

Cell Host & Microbe(2020)10.1016/j.chom.2020.02.009

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0DataRank · unranked

19 citations

John F. Rawls, Jia Wen

Transcriptional programmes underlying cellular identity and microbial responsiveness in the intestinal epithelium

Nature Reviews Gastroenterology & Hepatology(2020)10.1038/s41575-020-00357-6

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0DataRank · unranked

42 citations

James M. Davison, Cecelia Kelly, Gilberto Padilla Mercado, Colin R. Lickwar, John F. Rawls +1 more

Single-cell imaging of human cancer xenografts using adult immunodeficient zebrafish

Nature Protocols(2020)10.1038/s41596-020-0372-y

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0DataRank · unranked

24 citations

Daniel Do, Qiqi Yang, Dalton C. Brunson, John F. Rawls, David M. Langenau +1 more

Contribution of neutral processes to the assembly of gut microbial communities in the zebrafish over host development

UNC Libraries(2020)10.17615/vxyb-pb50

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2 citations

Sandi Wong, Karen Guillemin, Adam R. Burns, Brendan J. M. Bohannan, Keaton Stagaman +2 more

Microgavage of Zebrafish Larvae

UNC Libraries(2020)10.17615/4vs9-8n55

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0DataRank · unranked

1 citations

John F. Rawls, Jordan L. Cocchiaro

Carbon Monoxide and Heme Oxygenase-1 Prevent Intestinal Inflammation in Mice by Promoting Bacterial Clearance

UNC Libraries(2020)10.17615/05qx-fz63

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0DataRank · unranked

1 citations

Shehzad Z. Sheikh, Leo E. Otterbein, Taku Kobayashi, Lantz C. Mackey, Steven M. Russo +8 more

Increased rectal microbial richness is associated with the presence of colorectal adenomas in humans

UNC Libraries(2020)10.17615/gsd2-7n66

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0DataRank · unranked

1 citations

Amber N. McCoy, Ryan M. Legge, John F. Rawls, Anthony A. Fodor, Temitope O. Keku +9 more

Enteroendocrine cells sense bacterial tryptophan catabolites to activate enteric and vagal neuronal pathways

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.09.142133

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0DataRank · unranked

21 citations

Munhyung Bae, Chelsi D. Cassilly, Sairam V. Jabba, Daniel Thorpe, Alyce M. Martin +11 more

Fxr signaling and microbial metabolism of bile salts in the zebrafish intestine

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.13.422569

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0DataRank · unranked

7 citations

Gilberto Padilla Mercado, Alyssa Volland, Heidi L. Doden, Colin R. Lickwar, Taylor Crooks +6 more

Starvation causes changes in the intestinal transcriptome and microbiome that are reversed upon refeeding

Research Square(2020)10.21203/rs.3.rs-120052/v1

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0DataRank · unranked

3 citations

Alexander W. McCumber, Colin R. Lickwar, Caroline R. Amoroso, Sol Gómez de la Torre Canny, Sandi Wong +4 more

Evidence for a core gut microbiota in the zebrafish

UNC Libraries(2020)10.17615/q2d1-5648

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0DataRank · unranked

0 citations

John F. Rawls, Colleen M. Cavanaugh, Karen Guillemin, David M. Parichy, Guus Roeselers +2 more

Intronic Cis-Regulatory Modules Mediate Tissue-Specific and Microbial Control of angptl4/fiaf Transcription

UNC Libraries(2020)10.17615/qv00-vp02

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0DataRank · unranked

0 citations

John F. Rawls, Amelia L. Jazwa, J. Gray Camp, Chad M. Trent

A classification system for zebrafish adipose tissues

UNC Libraries(2020)10.17615/q7y6-cy98

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0DataRank · unranked

0 citations

James E. N. Minchin, John F. Rawls

Ontogeny and nutritional control of adipogenesis in zebrafish ( Danio rerio )

UNC Libraries(2020)10.17615/4g9d-0z61

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0DataRank · unranked

0 citations

Chad M. Trent, John F. Rawls, Edward J. Flynn

Commensal microbiota stimulate systemic neutrophil migration through induction of Serum amyloid A: Microbiota regulate systemic neutrophil function

UNC Libraries(2020)10.17615/b88c-sn22

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0DataRank · unranked

0 citations

Melinda R. Grosser, Edward J. Flynn, Michelle Kanther, Christian Jobin, John F. Rawls +3 more

Microbial Colonization Induces Dynamic Temporal and Spatial Patterns of NF-κB Activation in the Zebrafish Digestive Tract

UNC Libraries(2020)10.17615/53w2-yr56

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0DataRank · unranked

0 citations

Xiaolun Sun, John F. Rawls, Lantz C. Mackey, Christian Jobin, Edward J. Flynn +3 more

The composition of the zebrafish intestinal microbial community varies across development

UNC Libraries(2020)10.17615/b7vm-j214

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0DataRank · unranked

0 citations

Sandi Wong, W. Zac Stephens, John F. Rawls, Adam R. Burns, Keaton Stagaman +2 more

In vivo Analysis of White Adipose Tissue in Zebrafish

UNC Libraries(2020)10.17615/9q4x-6n49

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0DataRank · unranked

0 citations

James E. N. Minchin, John F. Rawls

Microbiota Regulate Intestinal Absorption and Metabolism of Fatty Acids in the Zebrafish

UNC Libraries(2020)10.17615/rbzm-xz63

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0DataRank · unranked

0 citations

Rob Knight, Steven Farber, Juliana Debrito Carten, Lantz C. Mackey, Jesse Stombaugh +2 more

Host–microbe interactions in the developing zebrafish

UNC Libraries(2020)10.17615/dyrb-cf87

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0DataRank · unranked

0 citations

John F. Rawls, Michelle Kanther

Microbiota regulate intestinal epithelial gene expression by suppressing the transcription factor Hepatocyte nuclear factor 4 alpha

UNC Libraries(2020)10.17615/gz9e-z407

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0DataRank · unranked

0 citations

James M. Davison, Colin R. Lickwar, Ghislaı̀n Breton, Lingyun Song, John F. Rawls +1 more

Methods for generating and colonizing gnotobiotic zebrafish

UNC Libraries(2020)10.17615/7gwj-bf63

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0DataRank · unranked

0 citations

Michelle Kanther, Linh N Pham, Ivana Semova, John F. Rawls

Patterns and Scales in Gastrointestinal Microbial Ecology

UNC Libraries(2020)10.17615/1p9v-r597

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0DataRank · unranked

0 citations

Michelle Kanther, J. Gray Camp, John F. Rawls, Ivana Semova

Plexin D1 determines body fat distribution by regulating the type V collagen microenvironment in visceral adipose tissue

UNC Libraries(2020)10.17615/dmx4-e942

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0DataRank · unranked

0 citations

Jonathan A. Epstein, Peter Arner, John F. Rawls, Christopher Harvey, James E. N. Minchin +4 more

Acoustofluidic rotational tweezing enables high-speed contactless morphological phenotyping of zebrafish larvae

Nature Communications(2021)10.1038/s41467-021-21373-3

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0DataRank · unranked

102 citations

Yuyang Gu, Julien Philippe, Peiran Zhang, Hunter Bachman, Jinxin Zhang +7 more

Fxr signaling and microbial metabolism of bile salts in the zebrafish intestine

Science Advances(2021)10.1126/sciadv.abg1371

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0DataRank · unranked

80 citations

Gilberto Padilla Mercado, Alyssa Volland, Heidi L. Doden, Colin R. Lickwar, Taylor Crooks +6 more

Non-diphtheriae Corynebacterium species are associated with decreased risk of pneumococcal colonization during infancy

The ISME Journal(2021)10.1038/s41396-021-01108-4

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0DataRank · unranked

39 citations

Catherine H. Plunkett, Yahe Yu, Jhoanna N. Aquino, Sweta Patel, Jillian H. Hurst +16 more

Single-cell imaging of T cell immunotherapy responses in vivo

The Journal of Experimental Medicine(2021)10.1084/jem.20210314

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0DataRank · unranked

27 citations

Qiqi Yang, Songfa Zhang, David G. Millar, Eric Alpert, Daniel Do +16 more

Microbial influences on gut development and gut-brain communication

Development(2021)10.1242/dev.194936

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0DataRank · unranked

27 citations

John F. Rawls, Lihua Ye

Mucosal candidiasis elicits NF- B activation, proinflammatory gene expression and localized neutrophilia in zebrafish

UNC Libraries(2021)10.17615/5wr5-1111

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0DataRank · unranked

2 citations

Robert T. Wheeler, John F. Rawls, Remi L. Gratacap

Glafenine-induced intestinal injury in zebrafish is ameliorated by -opioid signaling via enhancement of Atf6-dependent cellular stress responses

UNC Libraries(2021)10.17615/8g33-xr73

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0DataRank · unranked

2 citations

Christian Jobin, Jordan L. Cocchiaro, John F. Rawls, Jason R. Goldsmith

Tributyltin exposure leads to increased adiposity and reduced abundance of leptogenic bacteria in the zebrafish intestine

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.09.451869

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0DataRank · unranked

10 citations

Olaf Mueller, Camil V. Craciunescu, Bruce Blumberg, John F. Rawls, Sol Gómez de la Torre Canny

Age-related changes in the upper respiratory microbiome are associated with SARS-CoV-2 susceptibility and illness severity

medRxiv(2021)10.1101/2021.03.20.21252680

N/A

0DataRank · unranked

9 citations

Alexander W. McCumber, Jhoanna N. Aquino, Javier Rodriguez, Sarah M. Heston, Debra J. Lugo +10 more

Transcriptional integration of distinct microbial and nutritional signals by the small intestinal epithelium

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.01.465976

N/A

0DataRank · unranked

0 citations

James Davison, Cecelia Kelly, Gilberto Padilla Mercado, Jia Wen, Briana R. Davis +7 more

Ontogenetic Differences in Dietary Fat Influence Microbiota Assembly in the Zebrafish Gut

UNC Libraries(2021)10.17615/9z2r-5s12

N/A

0DataRank · unranked

0 citations

Sandi Wong, Adam R. Burns, Lawrence A. David, Keaton Stagaman, Brendan J. M. Bohannan +3 more

Age-Related Changes in the Nasopharyngeal Microbiome Are Associated With Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Infection and Symptoms Among Children, Adolescents, and Young Adults

Clinical Infectious Diseases(2022)10.1093/cid/ciac184

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0DataRank · unranked

55 citations

Alexander W. McCumber, Jhoanna N. Aquino, Javier Rodriguez, Sarah M. Heston, Debra J. Lugo +11 more

Using zebrafish to understand reciprocal interactions between the nervous and immune systems and the microbial world

Journal of Neuroinflammation(2022)10.1186/s12974-022-02506-x

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28 citations

John F. Rawls, Anne E. Clatworthy, Jean‐Pierre Levraud

Starvation causes changes in the intestinal transcriptome and microbiome that are reversed upon refeeding

BMC Genomics(2022)10.1186/s12864-022-08447-2

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0DataRank · unranked

27 citations

Alexander W. McCumber, Colin R. Lickwar, Caroline R. Amoroso, Sol Gómez de la Torre Canny, Sandi Wong +7 more

A Planar Culture Model of Human Absorptive Enterocytes Reveals Metformin Increases Fatty Acid Oxidation and Export

Cellular and Molecular Gastroenterology and Hepatology(2022)10.1016/j.jcmgh.2022.04.009

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0DataRank · unranked

21 citations

R. Jarrett Bliton, Keith A. Breau, Michael Czerwinski, Ian Williamson, Jia Wen +3 more

Conserved roles for Hnf4 family transcription factors in zebrafish development and intestinal function

Genetics(2022)10.1093/genetics/iyac133

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0DataRank · unranked

17 citations

Colin R. Lickwar, Matthew C. Tillman, Briana R. Davis, James M. Davison, Hsiu-Yi Lu +5 more

Transcriptional Integration of Distinct Microbial and Nutritional Signals by the Small Intestinal Epithelium

Cellular and Molecular Gastroenterology and Hepatology(2022)10.1016/j.jcmgh.2022.04.013

N/A

0DataRank · unranked

15 citations

James M. Davison, Cecelia Kelly, Gilberto Padilla Mercado, Jia Wen, Briana R. Davis +7 more

Pla2g12b is Essential for Expansion of Nascent Lipoprotein Particles

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.02.502564

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0DataRank · unranked

5 citations

Ombretta Foresti, Pradeep Kumar Yadav, Meredith H. Wilson, Tabea Moll, Meng‐Chieh Shen +8 more

DNA metabarcoding captures dietary plant diversity in individuals and cohorts

medRxiv(2022)10.1101/2022.06.13.22276343

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0DataRank · unranked

2 citations

Ammara Aqeel, Sharon Jiang, Heather K. Durand, Eric P. Dallow, Jessica R. McCann +10 more

Transcriptomics informs design of a planar human enterocyte culture system that reveals metformin enhances fatty acid export

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.24.477515

N/A

0DataRank · unranked

1 citations

R. Jarrett Bliton, Keith A. Breau, Michael Czerwinski, Ian Williamson, Jia Wen +3 more

“The Intestine is a Major Contributor to Circulating TCA Cycle Intermediates in Mice”

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.20.477123

N/A

0DataRank · unranked

0 citations

Sarah Anissa Hannou, You Wang, Inna Astapova, Ashot Sargsyan, Ruby Monn +8 more

Diversity of plant DNA in stool is linked to dietary quality, age, and household income

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2304441120

N/A

0DataRank · unranked

32 citations

Ammara Aqeel, Sharon Jiang, Heather K. Durand, Eric P. Dallow, Jessica R. McCann +12 more

Spontaneous episodic inflammation in the intestines of mice lacking HNF4A is driven by microbiota and associated with early life microbiota alterations

mBio(2023)10.1128/mbio.01504-23

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0DataRank · unranked

12 citations

Jayanth Jawahar, Lauren Davey, Jeffrey I. Everitt, Joseph A. Galanko, Chelsea Anderson +6 more

A high-cholesterol zebrafish diet promotes hypercholesterolemia and fasting-associated liver triglycerides accumulation

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.01.565134

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13 citations

Darby W. Kozan, Jennifer L. Anderson, Monica R. Hensley, Meng‐Chieh Shen, Jia Wen +5 more

A high-cholesterol zebrafish diet promotes hypercholesterolemia and fasting-associated liver steatosis

Journal of Lipid Research(2024)10.1016/j.jlr.2024.100637

N/A

0DataRank · unranked

16 citations

Darby W. Kozan, Eric D. Young, Monica R. Hensley, Meng‐Chieh Shen, Jia Wen +6 more

Early subclinical stages of the inflammatory bowel diseases: insights from human and animal studies

American Journal of Physiology-Gastrointestinal and Liver Physiology(2024)10.1152/ajpgi.00252.2024

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0DataRank · unranked

4 citations

R. Balfour Sartor, John F. Rawls, Cecelia Kelly

Protein absorption in the zebrafish gut is regulated by interactions between lysosome rich enterocytes and the microbiome

eLife(2024)10.7554/elife.100611

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0DataRank · unranked

16 citations

Jieun Park, Siyao Wang, Richard Y. Liu, Robert J. Barry, Stephen A. Watts +3 more

Protein absorption in the zebrafish gut is regulated by interactions between lysosome rich enterocytes and the microbiome

eLife(2024)10.7554/elife.100611.1

N/A

0DataRank · unranked

1 citations

Jieun Park, Siyao Wang, Richard Y. Liu, Robert J. Barry, Stephen A. Watts +3 more

Molecular characterization of mucosal adherent bacteria and associations with colorectal adenomas

UNC Libraries(2024)10.17615/yn41-b256

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0 citations

Nigel Jenkins, John F. Rawls, Caroline N. Mpande, Xiang Shen, Temitope O. Keku +5 more

The role of the microbiota in respiratory virus-bacterial pathobiont relationships in the upper respiratory tract

medRxiv(2024)10.1101/2024.10.22.24315478

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0DataRank · unranked

0 citations

Pixu Shi, Sefelani Boiditswe, Emily Qin, Andrew P. Steenhoff, Tiny Mazhani +11 more

Role of the upper airway microbiota in respiratory virus and bacterial pathobiont dynamics in the first year of life

Nature Communications(2025)10.1038/s41467-025-60552-4

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0DataRank · unranked

4 citations

Pixu Shi, Sifelane C. Boiditswe, Emily Qin, Andrew P. Steenhoff, Tiny Mazhani +11 more

Environmental Microbial Cues Alter Embryonic Development and Stress Responses in Vertebrates: Insights From the Zebrafish ( Danio rerio ) Model

Molecular Ecology(2025)10.1111/mec.70168

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0DataRank · unranked

1 citations

Akila Harishchandra, Colin R. Lickwar, Yeon Ji Kim, John F. Rawls, Richard Di Giulio +2 more

Protein absorption in the zebrafish gut is regulated by interactions between lysosome rich enterocytes and the microbiome

eLife(2025)10.7554/elife.100611.3

N/A

0DataRank · unranked

0 citations

Jieun Park, Siyao Wang, Richard Y. Liu, Robert J. Barry, Stephen A. Watts +3 more

Enteroendocrine cells sense bacterial tryptophan catabolites to activate enteric and vagal neuronal pathways

Cell Host & Microbe(2020)10.1016/j.chom.2020.11.011

N/A

0DataRank · unranked

311 citations

Munhyung Bae, Chelsi D. Cassilly, Sairam V. Jabba, Daniel Thorpe, Alyce M. Martin +11 more

Epithelial transcription factor Elf3 mediates host immune responses to microbiota and protects against aerocystitis in zebrafish

mBio(2025)10.1128/mbio.02267-25

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0DataRank · unranked

0 citations

Colin R. Lickwar, Christiane V. Löhr, Jia Wen, Margaret Morash, Mollie I. Sweeney +5 more