Thaddeus S. Stappenbeck

Biochemistry, Genetics and Molecular BiologyMedicineImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 31 papers. Top paper: “Reduced expression of COVID-19 host receptor, ACE2 is associated with small bowel inflammation, more severe disease, and response to anti-TNF therapy in Crohn’s disease”.

Reduced expression of COVID-19 host receptor, ACE2 is associated with small bowel inflammation, more severe disease, and response to anti-TNF therapy in Crohn’s disease

medRxiv(2020)10.1101/2020.04.19.20070995

N/A

0.489DataRank · unranked

25 citations

Shishir Dube, Takeo Naito, Gregory J. Botwin, Talin Haritunians, Dalin Li +11 more

Altered Intestinal ACE2 Levels Are Associated With Inflammation, Severe Disease, and Response to Anti-Cytokine Therapy in Inflammatory Bowel Disease

Gastroenterology(2020)10.1053/j.gastro.2020.10.041

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0DataRank · unranked

72 citations

Shishir Dube, Takeo Naito, Katherine Li, Gregory J. Botwin, Talin Haritunians +14 more

Epithelial Cell Biomarkers Are Predictive of Response to Biologic Agents in Crohn’s Disease

Inflammatory Bowel Diseases(2020)10.1093/ibd/izaa251

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0DataRank · unranked

15 citations

Kelli L. VanDussen, Ilyssa O. Gordon, Elisabeth M. Davis, Katherine Li, Kate Simpson +12 more

Patient-derived small intestinal myofibroblasts direct perfused, physiologically responsive capillary development in a microfluidic Gut-on-a-Chip Model

Scientific Reports(2020)10.1038/s41598-020-60672-5

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0DataRank · unranked

41 citations

Adam Bajinting, David M. Alvarado, Mahama A. Traoré, Michael M. Binkley, William H. Goo +18 more

A Network Medicine Approach to Investigation and Population-based Validation of Disease Manifestations and Drug Repurposing for COVID-19

ChemRxiv(2020)10.26434/chemrxiv.12579137

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0DataRank · unranked

30 citations

Yuan Hou, Jiayu Shen, Asha Kalianpur, Joe Zein, Daniel A. Culver +13 more

A Network Medicine Approach to Investigation and Population-based Validation of Disease Manifestations and Drug Repurposing for COVID-19

ChemRxiv(2020)10.26434/chemrxiv.12579137.v1

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0DataRank · unranked

19 citations

Yuan Hou, Jiayu Shen, Asha Kalianpur, Joe Zein, Daniel A. Culver +13 more

Epithelial cell biomarkers are predictive of response to biologic agents in Crohn’s disease

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.20.106518

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0DataRank · unranked

2 citations

Kelli L. VanDussen, Ilyssa O. Gordon, Elisabeth M. Davis, Katherine Li, Kate Simpson +12 more

Gut metabolites influence susceptibility of neonatal mice to cryptosporidiosis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.11.294462

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0DataRank · unranked

0 citations

Lisa J. Funkhouser-Jones, Marianna E. Akey, Deborah A. Schaefer, Kevin Ackman, Michael W. Riggs +3 more

Debaryomyces is enriched in Crohn’s disease intestinal tissue and impairs healing in mice

Science(2021)10.1126/science.abd0919

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0DataRank · unranked

219 citations

Aaron Ver Heul, Shanshan Xiong, Martin Gregory, Elora G. Demers, Justin Kern +14 more

Western diet induces Paneth cell defects through microbiome alterations and farnesoid X receptor and type I interferon activation

Cell Host & Microbe(2021)10.1016/j.chom.2021.04.004

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0DataRank · unranked

163 citations

Justin Kern, Umang Jain, Naomi Sonnek, Shanshan Xiong, Katherine F. Simpson +12 more

Enteric helminth coinfection enhances host susceptibility to neurotropic flaviviruses via a tuft cell-IL-4 receptor signaling axis

Cell(2021)10.1016/j.cell.2021.01.051

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0DataRank · unranked

66 citations

Hana Jáňová, James P. White, Glennys V. Reynoso, Heather D. Hickman, Megan T. Baldridge +5 more

Biofilm Formation and Virulence of Shigella flexneri Are Modulated by pH of Gastrointestinal Tract

Infection and Immunity(2021)10.1128/iai.00387-21

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0DataRank · unranked

22 citations

Yi Wang, Satoru Fujii, Brian D. Muegge, Qiuhe Lu, Phillip I. Tarr +2 more

HER2 and APC Mutations Promote Altered Crypt-Villus Morphology and Marked Hyperplasia in the Intestinal Epithelium

Cellular and Molecular Gastroenterology and Hepatology(2021)10.1016/j.jcmgh.2021.04.012

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0DataRank · unranked

11 citations

Xiaoqing Cheng, Anagha Krishna, Xiaohua Jin, Takahiro E. Ohara, Thaddeus S. Stappenbeck +2 more

Apurinic/Apyrimidinic Endonuclease 1 Restricts the Internalization of Bacteria Into Human Intestinal Epithelial Cells Through the Inhibition of Rac1

Frontiers in Immunology(2021)10.3389/fimmu.2020.553994

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0DataRank · unranked

8 citations

Lindsay D. Butcher, Amber Ablack, Laura Pace, Jailal Ablack, Richard Xiong +6 more

Bacterial infection drives trained immunity through epigenetic remodeling of epithelial stem cells

Research Square(2021)10.21203/rs.3.rs-842556/v1

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0DataRank · unranked

0 citations

Seongmi K. Russell, Hyung Joo Lee, Benjamin Olson, Jonathan Livny, Valerie P. O’Brien +9 more

Adaptive differentiation promotes intestinal villus recovery

Developmental Cell(2022)10.1016/j.devcel.2021.12.012

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0DataRank · unranked

67 citations

Marco Colonna, Thaddeus S. Stappenbeck, Takahiro E. Ohara

The Current State of Care for Black and Hispanic Inflammatory Bowel Disease Patients

Inflammatory Bowel Diseases(2022)10.1093/ibd/izac124

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0DataRank · unranked

30 citations

Bincy Abraham, Paula Adamson, Edward L. Barnes, Kelly A. Brister, Oriana M. Damas +14 more

Uropathogenic Escherichia coli infection-induced epithelial trained immunity impacts urinary tract disease outcome

Nature Microbiology(2023)10.1038/s41564-023-01346-6

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0DataRank · unranked

64 citations

Jessica K. Harrison, Benjamin Olson, Hyung Joo Lee, Valerie P. O’Brien, Xiaoyun Xing +14 more

Microbiota-produced indole metabolites disrupt mitochondrial function and inhibit Cryptosporidium parvum growth

Cell Reports(2023)10.1016/j.celrep.2023.112680

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0DataRank · unranked

48 citations

Rui Xu, Georgia Wilke, Yong Fu, Lawrence A. Schriefer, Heyde Makimaa +7 more

Microbiota produced indole metabolites disrupt host cell mitochondrial energy production and inhibit Cryptosporidium parvum growth

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.25.542157

N/A

0DataRank · unranked

2 citations

Rui Xu, Georgia Wilke, Yong Fu, Lawrence A. Shriefer, Heyde Makimaa +7 more

Cryptosporidium infection of human small intestinal epithelial cells induces type III interferon and impairs infectivity of Rotavirus

Gut Microbes(2024)10.1080/19490976.2023.2297897

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0DataRank · unranked

31 citations

Iti Saraav, Juhee Son, Yinxing Zhu, Denise Dayao, Avan Antia +6 more

A host-adapted auxotrophic gut symbiont induces mucosal immunodeficiency

Science(2024)10.1126/science.adk2536

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0DataRank · unranked

30 citations

Thomas C. A. Hitch, Julie Y. Zhou, Mohammed Dwidar, Naseer Sangwan, Dylan Lawrence +10 more

West Nile virus triggers intestinal dysmotility via T cell–mediated enteric nervous system injury

Journal of Clinical Investigation(2024)10.1172/jci181421

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0DataRank · unranked

12 citations

Fang Zhao, Pritesh Desai, Matthias Mack, Larissa B. Thackray, Thaddeus S. Stappenbeck +2 more

Western diet reduces small intestinal intraepithelial lymphocytes via FXR-Interferon pathway

Mucosal Immunology(2024)10.1016/j.mucimm.2024.07.001

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0DataRank · unranked

14 citations

Changqing Ma, Santosh K. Panda, Tihana Tršan, Miki Hodel, Jennifer Frein +11 more

Ileal Paneth Cell Phenotype is a Cellular Biomarker for Pouch Complications in Ulcerative Colitis

Journal of Crohn s and Colitis(2024)10.1093/ecco-jcc/jjae105

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0DataRank · unranked

7 citations

Talin Haritunians, Anas Gremida, Gaurav Syal, Janaki Shah, Shaohong Yang +15 more

Development of a deep learning algorithm for Paneth cell density quantification for inflammatory bowel disease

EBioMedicine(2024)10.1016/j.ebiom.2024.105440

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0DataRank · unranked

7 citations

Kathryn Sarullo, Jon N. Marsh, Liang Lu, Pooja Khonde, Changqing Ma +8 more

The centrosomal protein FGFR1OP controls myosin function in murine intestinal epithelial cells

Developmental Cell(2024)10.1016/j.devcel.2024.06.001

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0DataRank · unranked

2 citations

Vincent Peng, Chirag Krishna, Takahiro E. Ohara, Wandy L. Beatty, Raki Sudan +16 more

Gut Microbial Impact on Colitis and Colitis-Associated Carcinogenesis in a Primary Sclerosing Cholangitis-IBD Model

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.03.616279

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0DataRank · unranked

0 citations

Billy Ngo, Vik Meadows, Deniz Conskuner, Stephanie A. Montgomery, Morgan Farmer +6 more

Droplet vs Picowell: Considerations for Single-cell Transcriptomic Profiling of Human Colon Biopsies

Cellular and Molecular Gastroenterology and Hepatology(2025)10.1016/j.jcmgh.2025.101503

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0DataRank · unranked

1 citations

Ryan J. Musich, Connor M. Geraghty, Alexander Caraballo, Shijie He, Saleh Khawaled +7 more

A network medicine approach to investigation and population-based validation of disease manifestations and drug repurposing for COVID-19

PLoS Biology(2020)10.1371/journal.pbio.3000970

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0DataRank · unranked

186 citations

Yuan Hou, Jiayu Shen, Reena Mehra, Asha Kallianpur, Daniel A. Culver +13 more

Transgenerational Obesity Modulation of Gut Mucosal Immunity

The FASEB Journal(2025)10.1096/fj.202500542r

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0DataRank · unranked

0 citations

Justin Kern, Tihana Tršan, Santosh K. Panda, Marie L. Laury, Umang Jain +4 more