Naomi Habib

Also affiliated with Tucson Orthopaedic Institute

Biochemistry, Genetics and Molecular BiologyNeuroscienceImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile

4.0Author DataRank

Indexed papers

2in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Cell subtype-specific effects of genetic variation in the Alzheimer’s disease brain

Nature Genetics(2024)10.1038/s41588-024-01685-y

Top 9%

2.3DataRank

Top 9%179 citations

Zongmei Gao, Lu Zeng, Cristin McCabe, Charles C. White, Bernard Ng +22 more

Papers

Driven by 37 papers — median percentile 89. Top paper: “A functional selection model explains evolutionary robustness despite plasticity in regulatory networks”.

A functional selection model explains evolutionary robustness despite plasticity in regulatory networks

Molecular Systems Biology(2012)10.1038/msb.2012.50

N/A

2.6DataRank · unranked

51 citations

Ilan Wapinski, Hanah Margalit, Prisca Liberali, Nir Friedman, Naomi Habib

Cell subtype-specific effects of genetic variation in the Alzheimer’s disease brain

Nature Genetics(2024)10.1038/s41588-024-01685-y

Top 9%

2.3DataRank

Top 9%179 citations

Zongmei Gao, Lu Zeng, Cristin McCabe, Charles C. White, Bernard Ng +22 more

A cellular and spatial map of the choroid plexus across brain ventricles and ages

bioRxiv (Cold Spring Harbor Laboratory)(2019)10.1101/627539

Top 12%

1.7DataRank

Top 12%45 citations

Rebecca H. Herbst, Naomi Habib, Danielle Dionne, Cristin McCabe, Jin Cui +11 more

Multicellular communities are perturbed in the aging human brain and Alzheimer’s disease

Nature Neuroscience(2023)10.1038/s41593-023-01356-x

N/A

1.7DataRank · unranked

107 citations

Mariko Taga, Cristin McCabe, Gilad S. Green, Idan Hekselman, Charles C. White +12 more

Perturbation of m6A Writers Reveals Two Distinct Classes of mRNA Methylation at Internal and 5′ Sites

Cell Reports(2014)10.1016/j.celrep.2014.05.048

N/A

1.1DataRank · unranked

1246 citations

Maxwell R. Mumbach, Marko Jovanovic, Timothy Wang, Karolina Maciag, G. Guy Bushkin +16 more

Massively parallel single-nucleus RNA-seq with DroNc-seq

Nature Methods(2017)10.1038/nmeth.4407

N/A

1.1DataRank · unranked

1179 citations

Anindita Basu, Tyler Burks, Karthik Shekhar, Matan Hofree, François Aguet +9 more

Disease-associated astrocytes in Alzheimer’s disease and aging

Nature Neuroscience(2020)10.1038/s41593-020-0624-8

N/A

1.0DataRank · unranked

1000 citations

Cristin McCabe, Sedi Medina, Miriam Varshavsky, Daniel Kitsberg, Raz Dvir-Szternfeld +11 more

Div-Seq: A single nucleus RNA-Seq method reveals dynamics of rare adult newborn neurons in the CNS

bioRxiv (Cold Spring Harbor Laboratory)(2016)10.1101/045989

N/A

1.0DataRank · unranked

13 citations

Yinqing Li, Matthias Heidenreich, Lukasz Swiech, John J. Trombetta, Feng Zhang +2 more

Densely Interconnected Transcriptional Circuits Control Cell States in Human Hematopoiesis

Cell(2011)10.1016/j.cell.2011.01.004

N/A

1.0DataRank · unranked

984 citations

Aravind Subramanian, Lee N. Lawton, Raymond H. Mak, W. Nicholas Haining, Naomi Habib +23 more

Single cell RNA sequencing of human microglia uncovers a subset associated with Alzheimer’s disease

Nature Communications(2020)10.1038/s41467-020-19737-2

N/A

0.992DataRank · unranked

743 citations

Vilas Menon, Naomi Habib, Yiyi Ma, Christina J. Yung, Maria Cimpean +26 more

Div-Seq: Single-nucleus RNA-Seq reveals dynamics of rare adult newborn neurons

Science(2016)10.1126/science.aad7038

N/A

0.977DataRank · unranked

674 citations

Yinqing Li, Matthias Heidenreich, Lukasz Swiech, John J. Trombetta, Feng Zhang +4 more

Comparative Functional Genomics of the Fission Yeasts

Science(2011)10.1126/science.1203357

N/A

0.940DataRank · unranked

524 citations

Zehua Chen, Moran Yassour, Brian J. Haas, Naomi Habib, Ilan Wapinski +64 more

A cellular and spatial map of the choroid plexus across brain ventricles and ages

Cell(2021)10.1016/j.cell.2021.04.003

N/A

0.886DataRank · unranked

366 citations

Rebecca H. Herbst, Cristin McCabe, Gilad S. Green, Karol Kaiser, Joshua P. Head +18 more

Cellular dynamics across aged human brains uncover a multicellular cascade leading to Alzheimer’s disease

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.07.531493

N/A

0.854DataRank · unranked

44 citations

Wayne N. Frankel, Mariko Taga, Cristin McCabe, Anael Cain, Charles C. White +10 more

Structure and function of a transcriptional network activated by the MAPK Hog1

Nature Genetics(2008)10.1038/ng.235

N/A

0.819DataRank · unranked

234 citations

Tommy Kaplan, Ying Liu, Naomi Habib, Prisca Liberali, Nir Friedman +2 more

Cell-subtype specific effects of genetic variation in the aging and Alzheimer cortex

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.07.515446

N/A

0.808DataRank · unranked

35 citations

Zongmei Gao, Lu Zeng, Cristin McCabe, Charles C. White, Bernard Ng +22 more

Nuclei multiplexing with barcoded antibodies for single-nucleus genomics

Nature Communications(2019)10.1038/s41467-019-10756-2

N/A

0.803DataRank · unranked

211 citations

Bo Li, Cristin McCabe, Abigail Knecht, Yiming Yang, Eugene Drokhlyansky +11 more

Cellular communities reveal trajectories of brain ageing and Alzheimer’s disease

Nature(2024)10.1038/s41586-024-07871-6

N/A

0.776DataRank · unranked

175 citations

Masashi Fujita, Hyun‐Sik Yang, Mariko Taga, Anael Cain, Cristin McCabe +13 more

Opportunities and challenges of single-cell and spatially resolved genomics methods for neuroscience discovery

Nature Neuroscience(2024)10.1038/s41593-024-01806-0

N/A

0.691DataRank · unranked

29 citations

Gonçalo Castelo-Branco, Fei Chen, Simone Codeluppi, M. Ryan Corces, Jean Fan +26 more

Applying single-cell and single-nucleus genomics to studies of cellular heterogeneity and cell fate transitions in the nervous system

Nature Neuroscience(2024)10.1038/s41593-024-01827-9

N/A

0.613DataRank · unranked

18 citations

Trygve E. Bakken, Aparna Bhaduri, Chintan Chhatbar, Mariella G. Filbin, David Gate +21 more

N-acetylneuraminic acid links immune exhaustion and accelerated memory deficit in diet-induced obese Alzheimer’s disease mouse model

Nature Communications(2023)10.1038/s41467-023-36759-8

N/A

0.581DataRank · unranked

47 citations

Tommaso Croese, Adi Ravid, Or Gold, Abbe R. Clark, Sedi Medina +17 more

Single cell RNA sequencing of human microglia uncovers a subset that is associated with Alzheimer’s disease

Alzheimer's & Dementia(2020)10.1002/alz.038589

N/A

0.505DataRank · unranked

28 citations

Vilas Menon, Naomi Habib, Mariko Taga, Yiyi Ma, Anthony Khairallah +11 more

A Single-Nucleus Transcriptome-Wide Association Study Implicates Novel Genes in Depression Pathogenesis

Biological Psychiatry(2023)10.1016/j.biopsych.2023.12.012

N/A

0.494DataRank · unranked

26 citations

Masashi Fujita, Zongmei Gao, Charles C. White, Gilad S. Green, Naomi Habib +6 more

A cross-disease human microglial framework identifies disease-enriched subsets and tool compounds for microglial polarization

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.04.494709

N/A

0.464DataRank · unranked

21 citations

Mariko Taga, Verena Haage, Tina Roostaei, Charles C. White, Annie Lee +22 more

Molecular Connectomics Reveals a Glucagon-Like Peptide 1 Sensitive Neural Circuit for Satiety

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.31.564990

N/A

0.312DataRank · unranked

7 citations

Jordan J. Becker, Chia Li, Dana C. Schwalbe, Damien Kerspern, Eva O. Karolczak +15 more

Nuclei multiplexing with barcoded antibodies for single-nucleus genomics

bioRxiv (Cold Spring Harbor Laboratory)(2018)10.1101/476036

N/A

0.208DataRank · unranked

3 citations

Bo Li, Cristin McCabe, Abigail Knecht, Eugene Drokhlyansky, Nicholas Van Wittenberghe +10 more

P4‐256: A SINGLE‐CELL‐BASED ATLAS OF HUMAN MICROGLIAL STATES SHOWS DIVERGENT ASSOCIATIONS WITH AGING‐RELATED NEUROPATHOLOGIES AND DEMENTIA

Alzheimer's & Dementia(2018)10.1016/j.jalz.2018.07.078

N/A

0.207DataRank · unranked

2 citations

Vilas Menon, Naomi Habib, Mariko Taga, Christina J. Yung, Rani A. Sarkis +8 more

Author Correction: Opportunities and challenges of single-cell and spatially resolved genomics methods for neuroscience discovery

Nature Neuroscience(2024)10.1038/s41593-024-01858-2

N/A

0.118DataRank · unranked

1 citations

Gonçalo Castelo-Branco, Fei Chen, Simone Codeluppi, M. Ryan Corces, Jean Fan +26 more

Early neuronal reprogramming and cell cycle reentry shape Alzheimer’s disease progression

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.04.653670

N/A

0.104DataRank · unranked

1 citations

Gary E. Schwartz, Miriam Adam, Adi Avni Lapidot, Anael Cain, Gilad Sahar Green +5 more

Accelerated cognitive decline in obese mouse model of Alzheimer’s disease is linked to sialic acid-driven immune deregulation

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.05.479219

N/A

0DataRank · unranked

1 citations

Tommaso Croese, Adi Ravid, Or Gold, Abbe R. Clark, Sedi Medina +14 more

HTAPP_EZ Nuclei Isolation from frozen tissue v1

(2019)10.17504/protocols.io.4j9gur6

N/A

0DataRank · unranked

0 citations

Cristin McCabe, Eugene Drokhlyansky, Orit Rozenblatt–Rosen, Prisca Liberali, Orit Rozenblatt‐Rosen +1 more

DroNc-seq step-by-step v1

(2017)10.17504/protocols.io.md2c28e

N/A

0DataRank · unranked

0 citations

Naomi Habib, Prisca Liberali, Feng Zhang, Karthik Shekhar, Matan Hofree +10 more

HTAPP_Sorting nuclei into 96-well plates for Smart-Seq2 v1

(2019)10.17504/protocols.io.8r5hv86

N/A

0DataRank · unranked

0 citations

Lillian Bussema, Alyssa Richman, Simon Gritsch, Naomi Habib, Prisca Liberali +3 more

A cross-disease resource of living human microglia identifies disease-enriched subsets and tool compounds recapitulating microglial states

Nature Neuroscience(2024)10.1038/s41593-024-01764-7

N/A

0DataRank · unranked

51 citations

Mariko Taga, Verena Haage, Victoria Marshe, Tina Roostaei, Charles C. White +25 more

Molecular connectomics reveals a glucagon-like peptide 1-sensitive neural circuit for satiety

Nature Metabolism(2024)10.1038/s42255-024-01168-8

N/A

0DataRank · unranked

47 citations

Jordan J. Becker, Chia Li, Dana C. Schwalbe, Damien Kerspern, Eva O. Karolczak +15 more

HTAPP_ Sorting nuclei into 96-well plates for Smart-Seq2 v1

(2019)10.17504/protocols.io.8r7hv9n

N/A

0DataRank · unranked

0 citations

Lillian Bussema, Alyssa Richman, Simon Gritsch, Naomi Habib, Prisca Liberali +3 more

Author Correction: Nuclei multiplexing with barcoded antibodies for single-nucleus genomics

Nature Communications(2020)10.1038/s41467-020-19357-w

N/A

0DataRank · unranked

0 citations

Bo Li, Cristin McCabe, Abigail Knecht, Yiming Yang, Eugene Drokhlyansky +11 more

Naomi Habib

Indexed papers

Top data-sharing exemplar

Papers