Lyla Atta

Biochemistry, Genetics and Molecular BiologyImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 22 papers. Top paper: “Reference-free cell type deconvolution of multi-cellular pixel-resolution spatially resolved transcriptomics data”.

Reference-free cell type deconvolution of multi-cellular pixel-resolution spatially resolved transcriptomics data

Nature Communications(2022)10.1038/s41467-022-30033-z

N/A

5.1DataRank · unranked

244 citations

Feiyang Huang, Lyla Atta, Arpan Sahoo, Jean Fan, Brendan Miller

Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP)

Nature Cell Biology(2023)10.1038/s41556-023-01194-w

N/A

2.3DataRank · unranked

175 citations

Liming Pei, Jeffrey M. Spraggins, Michael Angelo, James P. Carson, Nils Gehlenborg +95 more

Interactions between cancer cells and immune cells drive transitions to mesenchymal-like states in glioblastoma

Cancer Cell(2021)10.1016/j.ccell.2021.05.002

N/A

0.953DataRank · unranked

575 citations

Rony Chanoch-Myers, Nathan D. Mathewson, Chad Myskiw, Lyla Atta, Lillian Bussema +17 more

Gene count normalization in single-cell imaging-based spatially resolved transcriptomics

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.30.555624

N/A

0.269DataRank · unranked

5 citations

Kalen Clifton, Manjari Anant, Gohta Aihara, Jean Fan, Lyla Atta

Characterizing cell-type spatial relationships across length scales in spatially resolved omics data

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.05.560733

N/A

0.165DataRank · unranked

2 citations

Brendan F. Miller, Maigan A. Brusko, Gohta Aihara, Lyla Atta, Manjari Anant +5 more

Interactions between cancer cells and immune cells drive transitions to mesenchymal-like states in glioblastoma

Cancer Cell(2025)10.1016/j.ccell.2025.05.007

N/A

0.110DataRank · unranked

1 citations

Rony Chanoch-Myers, Nathan D. Mathewson, Chad Myskiw, Lyla Atta, Lillian Bussema +17 more

De Novo Powered Air-Purifying Respirator Design and Fabrication for Pandemic Response

Frontiers in Bioengineering and Biotechnology(2021)10.3389/fbioe.2021.690905

N/A

0DataRank · unranked

7 citations

Lyla Atta, Deborah Plana, Ferrous Ward, Christopher Davis, Avilash Cramer +15 more

Reference-free cell-type deconvolution of multi-cellular pixel-resolution spatially resolved transcriptomics data

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.15.448381

N/A

0DataRank · unranked

15 citations

Feiyang Huang, Lyla Atta, Arpan Sahoo, Jean Fan, Brendan F. Miller

STalign: Alignment of spatial transcriptomics data using diffeomorphic metric mapping

Nature Communications(2023)10.1038/s41467-023-43915-7

N/A

0DataRank · unranked

141 citations

Manjari Anant, Gohta Aihara, Lyla Atta, Osagie K. Aimiuwu, Justus M. Kebschull +4 more

Soluble PD-L1 reprograms blood monocytes to prevent cerebral edema and facilitate recovery after ischemic stroke

Brain Behavior and Immunity(2023)10.1016/j.bbi.2023.12.007

N/A

0DataRank · unranked

34 citations

Ryan P. Lee, Eli Yazigi, Lyla Atta, James Feghali, Ayush Pant +23 more

Alignment of spatial transcriptomics data using diffeomorphic metric mapping

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.11.534630

N/A

0DataRank · unranked

13 citations

Manjari Anant, Gohta Aihara, Lyla Atta, Osagie K. Aimiuwu, Justus M. Kebschull +4 more

Open Case Studies: Statistics and Data Science Education through Real-World Applications

arXiv (Cornell University)(2023)10.48550/arxiv.2301.05298

N/A

0DataRank · unranked

7 citations

Qier Meng, Michael R. Breshock, Lyla Atta, Margaret A. Taub, Leah R. Jager +3 more

Gene count normalization in single-cell imaging-based spatially resolved transcriptomics

Genome biology(2024)10.1186/s13059-024-03303-w

N/A

0DataRank · unranked

24 citations

Kalen Clifton, Manjari Anant, Gohta Aihara, Jean Fan, Lyla Atta

Open Case Studies: Statistics and Data Science Education through Real-World Applications

Journal of Statistics and Data Science Education(2024)10.1080/26939169.2024.2394541

N/A

0DataRank · unranked

11 citations

Qier Meng, Michael R. Breshock, Lyla Atta, Margaret A. Taub, Leah R. Jager +3 more

SEraster: a rasterization preprocessing framework for scalable spatial omics data analysis

Bioinformatics(2024)10.1093/bioinformatics/btae412

N/A

0DataRank · unranked

10 citations

Kalen Clifton, Mayling Chen, Zhuoyan Li, Lyla Atta, Brendan Miller +4 more

OTME-7. Cancer - immune cell interactions drive transitions to mesenchymal-like state in glioblastoma

Neuro-Oncology Advances(2021)10.1093/noajnl/vdab070.058

N/A

0DataRank · unranked

0 citations

Rony Chanoch-Myers, Chad Myskiw, Lyla Atta, Lillian Bussema, Gabriela S. Kinker +17 more

Characterizing cell-type spatial relationships across length scales in spatially resolved omics data

Nature Communications(2025)10.1038/s41467-024-55700-1

N/A

0DataRank · unranked

10 citations

Brendan F. Miller, Maigan A. Brusko, Gohta Aihara, Lyla Atta, Manjari Anant +5 more

TAMI-12. CANCER-IMMUNE CELL INTERACTIONS DRIVE TRANSITIONS TO MESENCHYMAL-LIKE STATES IN GLIOBLASTOMA

Neuro-Oncology(2021)10.1093/neuonc/noab196.796

N/A

0DataRank · unranked

0 citations

Rony Chanoch-Myers, Chad Myskiw, Lyla Atta, Lillian Bussema, Alissa Greenwald +17 more

Considerations for the Selection and Use of Disinfectants Against SARS-CoV-2 in a Health Care Setting

Open Forum Infectious Diseases(2020)10.1093/ofid/ofaa396

N/A

0DataRank · unranked

8 citations

Adriane A. Levin, Alejandra Avalos‐Pacheco, Deborah Plana, Eleanor A. Rand, Helen Yang +11 more

A Crisis-Responsive Framework for Medical Device Development during the COVID-19 Pandemic

Preprints.org(2020)10.20944/preprints202009.0577.v1

N/A

0DataRank · unranked

3 citations

Deborah Plana, Shriya S. Srinivasan, Lyla Atta, Aditya Achanta, Helen Yang +8 more

Computational challenges and opportunities in spatially resolved transcriptomic data analysis

Nature Communications(2021)10.1038/s41467-021-25557-9

N/A

0DataRank · unranked

81 citations

Jean Fan, Lyla Atta

VeloViz: RNA velocity-informed embeddings for visualizing cellular trajectories

Bioinformatics(2021)10.1093/bioinformatics/btab653

N/A

0DataRank · unranked

22 citations

Arpan Sahoo, Jean Fan, Lyla Atta