🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Charles Christoffer

Purdue University West Lafayette

ORCID: 0000-0002-6163-6323
Biochemistry, Genetics and Molecular BiologyMaterials ScienceComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
8.4Author DataRank

Indexed papers

6in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 6 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment

Proteins Structure Function and Bioinformatics(2021)10.1002/prot.26222
Top 9%
2.3DataRank
Top 9%127 citations

Guillaume Brysbaert, Théo Mauri, Nurul Nadzirin, Sameer Velankar, Raphaël A. G. Chaleil +95 more

Papers

Driven by 24 papers — median percentile 83. Top paper: “Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment”.

Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment

Proteins Structure Function and Bioinformatics(2021)10.1002/prot.26222
Top 9%
2.3DataRank
Top 9%127 citations

Guillaume Brysbaert, Théo Mauri, Nurul Nadzirin, Sameer Velankar, Raphaël A. G. Chaleil +95 more

Real-time structure search and structure classification for AlphaFold protein models

Communications Biology(2022)10.1038/s42003-022-03261-8
Top 11%
2.0DataRank
Top 11%63 citations

Vijay Bharadwaj, Charles Christoffer, Genki Terashi, Zicong Zhang, Rashidedin Jahandideh +3 more

Impact of AlphaFold on structure prediction of protein complexes: The CASP15‐CAPRI experiment

Proteins Structure Function and Bioinformatics(2023)10.1002/prot.26609
Top 11%
1.9DataRank
Top 11%81 citations

Guillaume Brysbaert, Nessim Raouraoua, Paul A. Bates, Marco Giulini, Rodrigo V. Honorato +95 more

VESPER: global and local cryo-EM map alignment using local density vectors

Nature Communications(2021)10.1038/s41467-021-22401-y
Top 24%
0.850DataRank
Top 24%31 citations

Genki Terashi, Charles Christoffer, Siyang Chen, Daisuke Kihara, Xusi Han

Discriminating physiological from non‐physiological interfaces in structures of protein complexes: A community‐wide study

PROTEOMICS(2023)10.1002/pmic.202200323
Top 25%
0.815DataRank
Top 25%26 citations

Qifang Xu, Gerardo Tauriello, Lorenzo Pantolini, Torsten Schwede, Frédéric Cazals +41 more

LZerD Protein-Protein Docking Webserver Enhanced With de novo Structure Prediction

Frontiers in Molecular Biosciences(2021)10.3389/fmolb.2021.724947
N/A
0.593DataRank · unranked
51 citations

Vijay Bharadwaj, Ryan Luu, Daisuke Kihara, Charles Christoffer

Impact of AlphaFold on Structure Prediction of Protein Complexes: The CASP15-CAPRI Experiment

Utrecht University Repository (Utrecht University)(2023)10.22541/au.168888815.53957253/v1
Top 36%
0.540DataRank
Top 36%17 citations

Guillaume Brysbaert, Nessim Raouraoua, Paul A. Bates, Marco Giulini, Rodrigo V. Honorato +95 more

Analyzing effect of quadruple multiple sequence alignments on deep learning based protein inter-residue distance prediction

Scientific Reports(2021)10.1038/s41598-021-87204-z
N/A
0.500DataRank · unranked
27 citations

Genki Terashi, Yuki Kagaya, Sai Raghavendra Maddhuri Venkata Subramaniya, Charles Christoffer, Daisuke Kihara +1 more

RL-MLZerD: Multimeric protein docking using reinforcement learning

Frontiers in Molecular Biosciences(2022)10.3389/fmolb.2022.969394
N/A
0.416DataRank · unranked
15 citations

Charles Christoffer, Daisuke Kihara, Tunde Aderinwale

Real-Time Structure Search and Structure Classification for AlphaFold Protein Models

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.21.465371
N/A
0.360DataRank · unranked
10 citations

Vijay Bharadwaj, Charles Christoffer, Genki Terashi, Zicong Zhang, Rashidedin Jahandideh +3 more

Heterogeneity in Lowe Syndrome: Mutations Affecting the Phosphatase Domain of OCRL1 Differ in Impact on Enzymatic Activity and Severity of Cellular Phenotypes

Biomolecules(2023)10.3390/biom13040615
N/A
0.330DataRank · unranked
8 citations

Swetha Ramadesikan, Adrianna F. Black, Charles Christoffer, Andrés Felipe Pacheco Pacheco, Sneha Subramanian +6 more

AttentiveDist: Protein Inter-Residue Distance Prediction Using Deep Learning with Attention on Quadruple Multiple Sequence Alignments

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.24.396770
N/A
0.241DataRank · unranked
4 citations

Genki Terashi, Yuki Kagaya, Sai Raghavendra Maddhuri Venkata Subramaniya, Charles Christoffer, Daisuke Kihara +1 more

Improved Peptide Docking with Privileged Knowledge Distillation using Deep Learning

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.01.569671
N/A
0.241DataRank · unranked
4 citations

Jacob Verburgt, Yuki Kagaya, Charles Christoffer, Daisuke Kihara, Zicong Zhang

Integrative Protein Assembly With LZerD and Deep Learning in CAPRI 47–55

Proteins Structure Function and Bioinformatics(2025)10.1002/prot.26818
N/A
0.208DataRank · unranked
3 citations

Yuki Kagaya, Jacob Verburgt, Genki Terashi, Woong‐Hee Shin, Anika Jain +8 more

Learning with Privileged Knowledge Distillation for Improved Peptide–Protein Docking

ACS Omega(2025)10.1021/acsomega.5c00967
N/A
0.165DataRank · unranked
2 citations

Jacob Verburgt, Yuki Kagaya, Charles Christoffer, Daisuke Kihara, Zicong Zhang

Domain-Based Protein Docking with Extremely Large Conformational Changes

Journal of Molecular Biology(2022)10.1016/j.jmb.2022.167820
N/A
0DataRank · unranked
15 citations

Daisuke Kihara, Charles Christoffer

Modeling protein–nucleic acid complexes with extremely large conformational changes using Flex‐LZerD

PROTEOMICS(2022)10.1002/pmic.202200322
N/A
0DataRank · unranked
13 citations

Daisuke Kihara, Charles Christoffer

Pairwise and Multi-chain Protein Docking Enhanced Using LZerD Web Server

Methods in molecular biology(2023)10.1007/978-1-0716-3327-4_28
N/A
0DataRank · unranked
4 citations

Charles Christoffer, M. Michael Gromiha, Daisuke Kihara, K. Harini

SHREC 2021: Surface-based Protein Domains Retrieval

Zenodo (CERN European Organization for Nuclear Research)(2021)10.2312/3dor.20211308
N/A
0DataRank · unranked
1 citations

Tunde Aderinwale, Charles Christoffer, Woong‐Hee Shin, Genki Terashi, Xiao Wang +19 more

Surface-based protein domains retrieval methods from a SHREC2021 challenge

Journal of Molecular Graphics and Modelling(2021)10.1016/j.jmgm.2021.108103
N/A
0DataRank · unranked
3 citations

Tunde Aderinwale, Charles Christoffer, Woong‐Hee Shin, Genki Terashi, Xiao Wang +19 more

Assembly of Protein Complexes In and On the Membrane with Predicted Spatial Arrangement Constraints

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.20.563303
N/A
0DataRank · unranked
1 citations

K. Harini, Gupta Archit, Daisuke Kihara, Charles Christoffer

Assembly of Protein Complexes in and on the Membrane with Predicted Spatial Arrangement Constraints

Journal of Molecular Biology(2024)10.1016/j.jmb.2024.168486
N/A
0DataRank · unranked
4 citations

K. Harini, Gupta Archit, Daisuke Kihara, Charles Christoffer

LZerD webserver for pairwise and multiple protein–protein docking

Nucleic Acids Research(2021)10.1093/nar/gkab336
N/A
0DataRank · unranked
104 citations

Siyang Chen, Vijay Bharadwaj, Tunde Aderinwale, Vidhur Kumar, Matin Hormati +2 more

Computational structure modeling for diverse categories of macromolecular interactions

Current Opinion in Structural Biology(2020)10.1016/j.sbi.2020.05.017
N/A
0DataRank · unranked
33 citations

Charles Christoffer, Daipayan Sarkar, Eman Alnabati, Daisuke Kihara, Tunde Aderinwale