Xiaowei Zhan

Also affiliated with The University of Texas Southwestern Medical Center

Biochemistry, Genetics and Molecular BiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

19.9Author DataRank

Indexed papers

3in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A global reference for human genetic variation

Nature(2015)10.1038/nature15393

Top 1%

10.6DataRank

Top 1%20166 citations

Gonçalo R. Abecasis, Richard M. Durbin, Panagiotis Deloukas, Aravinda Chakravarti, Peter Donnelly +516 more

Papers

Driven by 61 papers — median percentile 98. Top paper: “A global reference for human genetic variation”.

A global reference for human genetic variation

Nature(2015)10.1038/nature15393

Top 1%

10.6DataRank

Top 1%20166 citations

Gonçalo R. Abecasis, Richard M. Durbin, Panagiotis Deloukas, Aravinda Chakravarti, Peter Donnelly +516 more

A map of human genome variation from population-scale sequencing

Nature(2010)10.1038/nature09534

Top 2%

9.1DataRank

Top 2%8109 citations

Min Hu, Yuan Chen, Matthew N. Bainbridge, Richard M. Durbin, Si Quang Le +319 more

Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis

Nature Communications(2016)10.1038/ncomms12460

N/A

3.8DataRank · unranked

87 citations

Fan Zhu, Javier García-García, Eli Stahl, Abhishek Pratap, Gaurav Pandey +108 more

Model-based assessment of replicability for genome-wide association meta-analysis

Nature Communications(2021)10.1038/s41467-021-21226-z

N/A

1.5DataRank · unranked

40 citations

Yu Jiang, Mengzhen Liu, J. Dylan Weissenkampen, Scott A. Eckert, Lina Yang +125 more

Aggregation-induced emission of 1-methyl-1,2,3,4,5-pentaphenylsilole

Chemical Communications(2001)10.1039/b105159h

N/A

1.3DataRank · unranked

8102 citations

Zhiliang Xie, Jacky W. Y. Lam, Lin Cheng, Ben Zhong Tang, Haiying Chen +8 more

Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use

Nature Genetics(2019)10.1038/s41588-018-0307-5

N/A

1.1DataRank · unranked

2128 citations

Mengzhen Liu, HUNT All-In Psychiatry, Yu Jiang, Robbee Wedow, Yue Li +120 more

Small molecule donors based on benzodithiophene and diketopyrrolopyrrole compatible with both fullerene and non-fullerene acceptors

Journal of Materials Chemistry C(2018)10.1039/c8tc00799c

N/A

1.1DataRank · unranked

24 citations

Jingshuai Zhu, Xiao-Zhen Wang, Cenqi Yan, Yun-Fei Chai, Zi-Zhen Chen +3 more

Genome-wide association analyses identify distinct genetic architectures for age-related macular degeneration across ancestries

Nature Genetics(2024)10.1038/s41588-024-01764-0

N/A

0.561DataRank · unranked

41 citations

Georgios Voloudakis, Robert P. Igo, Tyler G. Kinzy, Christopher Halladay, Tim B. Bigdeli +94 more

Association Analysis and Meta-Analysis of Multi-Allelic Variants for Large-Scale Sequence Data

Genes(2020)10.3390/genes11050586

N/A

0.434DataRank · unranked

17 citations

Sai Chen, Xingyan Wang, Mengzhen Liu, William G. Iacono, John K. Hewitt +15 more

Genetic determinants underlying the progressive phenotype of β-lactam/β-lactamase inhibitor resistance in Escherichia coli

Microbiology Spectrum(2023)10.1128/spectrum.02221-23

N/A

0.364DataRank · unranked

6 citations

Hatim Amiji, Jordan Bremer, Selvalakshmi Selvaraj Anand, Benjamin Strope, Pranoti Sahasrabhojane +8 more

OVOL2 sustains postnatal thymic epithelial cell identity

Nature Communications(2023)10.1038/s41467-023-43456-z

N/A

0.345DataRank · unranked

7 citations

Nagesh Peddada, Jianhui Wang, James J. Moresco, Xiaowei Zhan, John M. Shelton +7 more

Osteosarcoma Explorer: A Data Commons With Clinical, Genomic, Protein, and Tissue Imaging Data for Osteosarcoma Research

JCO Clinical Cancer Informatics(2023)10.1200/cci.23.00104

Top 58%

0.273DataRank

Top 58%4 citations

Qinbo Zhou, Lauren Furman-Cline, Xian Cheng, Danni Luo, Hongyin Lai +21 more

MetaPrism: A versatile toolkit for joint taxa/gene analysis of metagenomic sequencing data

G3 Genes Genomes Genetics(2021)10.1093/g3journal/jkab046

N/A

0.165DataRank · unranked

2 citations

Shuang Jiang, Yiqing Wang, Guanghua Xiao, Yang Xie, Dajiang J. Liu +4 more

SMIXnorm: Fast and Accurate RNA-Seq Data Normalization for Formalin-Fixed Paraffin-Embedded Samples

Frontiers in Genetics(2021)10.3389/fgene.2021.650795

N/A

0DataRank · unranked

9 citations

Xiaowei Zhan, Bo Yao, Guanghua Xiao, Xinlei Wang, Yang Xie +1 more

BayesSMILES: Bayesian Segmentation Modeling for Longitudinal Epidemiological Studies

Journal of Data Science(2021)10.6339/21-jds1009

N/A

0DataRank · unranked

4 citations

Quan Zhou, Xiaowei Zhan, Qiwei Li, Shuang Jiang

Inferring genes that escape X-Chromosome inactivation reveals important contribution of variable escape genes to sex-biased diseases

Genome Research(2021)10.1101/gr.275677.121

N/A

0DataRank · unranked

42 citations

Jill M. Stahl, J. Chen James, Marisa Englebright, Fang Chen, Xiaowei Zhan +3 more

KIRCLE: An Analysis of Variations in KIR Genes in The Cancer Genome Atlas and UK Biobank

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.02.458787

N/A

0DataRank · unranked

0 citations

Dajiang J. Liu, Xiaowei Zhan, Bo Li, Galen F. Gao

A Survey of Statistical Methods for Microbiome Data Analysis

Frontiers in Applied Mathematics and Statistics(2022)10.3389/fams.2022.884810

N/A

0DataRank · unranked

53 citations

Shuang Jiang, Michael L. Neugent, Nicole J. De Nisco, Xiaowei Zhan, Qiwei Li +1 more

Systematic Analysis of Mobile Genetic Elements Mediating β-Lactamase Gene Amplification in Noncarbapenemase-Producing Carbapenem-Resistant Enterobacterales Bloodstream Infections

mSystems(2022)10.1128/msystems.00476-22

N/A

0DataRank · unranked

43 citations

Anna Konovalova, Patrick M. McDaneld, Marc Gohel, Benjamin Strope, Pranoti Sahasrabhojane +12 more

Analysis of KIR gene variants in The Cancer Genome Atlas and UK Biobank using KIRCLE

BMC Biology(2022)10.1186/s12915-022-01392-2

N/A

0DataRank · unranked

7 citations

Dajiang J. Liu, Xiaowei Zhan, Bo Li, Galen F. Gao

Immune checkpoint blockade induces gut microbiota translocation that augments extraintestinal anti-tumor immunity

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.26.477865

N/A

0DataRank · unranked

7 citations

Yajing Gao, Laura Coughlin, Nicole Poulides, Jiwoong Kim, Xiaowei Zhan +4 more

A Deep Learning Approach for Histology-Based Nuclei Segmentation and Tumor Microenvironment Characterization

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.08.519641

N/A

0DataRank · unranked

2 citations

Hudanyun Sheng, Kevin W. Jin, Fangjiang Wu, Danni Luo, Zhuoyu Wen +10 more

Systematic Analysis of Mobile Genetic Elements Mediating β-lactamase Gene Amplification in Non-Carbapenemase-Producing Carbapenem Resistant Enterobacterales Bloodstream Infections

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.20.492874

N/A

0DataRank · unranked

0 citations

Anna Konovalova, Patrick M. McDaneld, Manjit Gohel, Benjamin Strope, Pranoti Sahasrabhojane +12 more

Immune checkpoint blockade induces gut microbiota translocation that augments extraintestinal antitumor immunity

Science Immunology(2023)10.1126/sciimmunol.abo2003

N/A

0DataRank · unranked

124 citations

Jake Lichterman, Laura Coughlin, Nicole Poulides, Wenling Li, Priscilla Del Valle +10 more

A Deep Learning Approach for Histology-Based Nucleus Segmentation and Tumor Microenvironment Characterization

Modern Pathology(2023)10.1016/j.modpat.2023.100196

N/A

0DataRank · unranked

72 citations

Hudanyun Sheng, Kevin W. Jin, Fangjiang Wu, Danni Luo, Zhuoyu Wen +10 more

Deep learning of cell spatial organizations identifies clinically relevant insights in tissue images

Nature Communications(2023)10.1038/s41467-023-43172-8

N/A

0DataRank · unranked

41 citations

Ruichen Rong, Qin Zhou, Donghan M. Yang, Xinyi Zhang, Xiaowei Zhan +10 more

Enhanced Pathology Image Quality with Restore–Generative Adversarial Network

American Journal Of Pathology(2023)10.1016/j.ajpath.2022.12.011

N/A

0DataRank · unranked

29 citations

Shidan Wang, Xinyi Zhang, Zhuoyu Wen, Xian Wu Cheng, Liwei Jia +5 more

Whole genome sequencing of 4,787 individuals identifies gene-based rare variants in age-related macular degeneration

Human Molecular Genetics(2023)10.1093/hmg/ddad189

N/A

0DataRank · unranked

11 citations

Matthew Zawistowski, Lars G. Fritsche, Xiaowei Zhan, Jennifer L. Bragg‐Gresham, Kari Branham +9 more

Unsupervised domain adaptation for nuclei segmentation: Adapting from hematoxylin & eosin stained slides to immunohistochemistry stained slides using a curriculum approach

Computer Methods and Programs in Biomedicine(2023)10.1016/j.cmpb.2023.107768

N/A

0DataRank · unranked

12 citations

Ruichen Rong, Zifan Gu, Junya Fujimoto, Xiaowei Zhan, Yang Xie +2 more

Spatial Transcriptomics Arena (STAr): an Integrated Platform for Spatial Transcriptomics Methodology Research

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.10.532127

N/A

0DataRank · unranked

3 citations

Danni Luo, Esteban Fernández, Jie Yang, Huimin Li, Kevin W. Jin +8 more

Genetic Determinants Underlying the Progressive Phenotype of β-lactam/β-lactamase Inhibitor Resistance in Escherichia coli

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.24.542208

N/A

0DataRank · unranked

2 citations

Hatim Amiji, Jordan Bremer, Selvalakshmi Selvaraj Anand, Benjamin Strope, Pranoti Sahasrabhojane +8 more

IsoAnalytics: A Single-cell Proteomics Web Server

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.03.522673

N/A

0DataRank · unranked

0 citations

Andrew Y. Koh, Xiaowei Zhan, Suzette N. Palmer

Susceptible bacteria survive antibiotic treatment in the mammalian gastrointestinal tract without evolving resistance

Repositorio Institucional UCA (Pontificia Universidad Católica Argentina)(2023)10.1101/2023.01.11.523617

N/A

0DataRank · unranked

0 citations

Parastoo Sabaeifard, Muhammed Sadik Yildiz, Laura Coughlin, Sara Ahmed, Cassie L. Behrendt +11 more

IsoAnalytics: a single-cell proteomics web server

Bioinformatics Advances(2023)10.1093/bioadv/vbad077

N/A

0DataRank · unranked

0 citations

Andrew Y. Koh, Xiaowei Zhan, Suzette N. Palmer

Deep Learning of Cell Spatial Organizations Identifies Clinically Relevant Insights in Tissue Images

Research Square(2023)10.21203/rs.3.rs-2928838/v1

N/A

0DataRank · unranked

0 citations

Shidan Wang, Ruichen Rong, Donghan M. Yang, Xinyi Zhang, Xiaowei Zhan +8 more

ScopeViewer: A Browser-Based Solution for Visualizing Spatial Transcriptomics Data

Tiempo de paz(2023)10.1101/2023.07.24.549256

N/A

0DataRank · unranked

0 citations

Sophie Robertson, Yuanchun Zhan, Ruichen Rong, Shidan Wang, Xi Jiang +7 more

A critical assessment of using ChatGPT for extracting structured data from clinical notes

npj Digital Medicine(2024)10.1038/s41746-024-01079-8

N/A

0DataRank · unranked

250 citations

Donghan M. Yang, Ruichen Rong, Kuroush Nezafati, Colin Treager, Zhikai Chi +9 more

Susceptible bacteria can survive antibiotic treatment in the mammalian gastrointestinal tract without evolving resistance

Cell Host & Microbe(2024)10.1016/j.chom.2024.01.012

N/A

0DataRank · unranked

11 citations

Parastoo Sabaeifard, Muhammed Sadik Yildiz, A. L. Lyon, Laura Coughlin, Sara Ahmed +14 more

Navigating electronic health record accuracy by examination of sex incongruent conditions

Journal of the American Medical Informatics Association(2024)10.1093/jamia/ocae236

N/A

0DataRank · unranked

8 citations

Ralph J. DeBerardinis, Xiaowei Zhan, Guanghua Xiao, Yang Xie, Ling Cai

Enhancing Medical Imaging Segmentation with GB-SAM: A Novel Approach to Tissue Segmentation Using Granular Box Prompts

Cancers(2024)10.3390/cancers16132391

N/A

0DataRank · unranked

5 citations

Ruichen Rong, Peiran Quan, Zhuoyu Wen, Xiaowei Zhan, Donghan M. Yang +4 more

Antibiotic resistance genotype, phenotype, and clinical outcomes in patients with Gram-negative infections at Rabin Medical Center in Israel

Microbiology Spectrum(2024)10.1128/spectrum.00383-24

N/A

0DataRank · unranked

4 citations

Jackson Barth, Andrew E. Clark, Dhara Desai, Ji-Woong Kim, Christine Pybus +5 more

Maternal high fat diet exposure modifies amniotic fluid metabolites and expands group 3 innate lymphoid cells dependent on the maternal microbiome and MyD88-signaling

Frontiers in Immunology(2024)10.3389/fimmu.2024.1439804

N/A

0DataRank · unranked

2 citations

Dongmei Lu, Sana Jaleel, Suzette N. Palmer, Mala Mahendroo, Xiaowei Zhan +2 more

Multi-Agent LLMs Ensemble for Efficient Atrial Fibrillation Annotation of ECG Reports

arXiv (Cornell University)(2024)10.48550/arxiv.2410.16543

N/A

0DataRank · unranked

0 citations

Kuroush Nezafati, Ismael Villanueva-Miranda, Zifan Gu, Xu, Yueshuang, Ann Marie Návar +11 more

Integrating electronic health records and GWAS summary statistics to predict the progression of autoimmune diseases from preclinical stages

Nature Communications(2025)10.1038/s41467-024-55636-6

N/A

0DataRank · unranked

6 citations

Havell Markus, Avantika R. Diwadkar, Chachrit Khunsriraksakul, Laura Carrel, Bingshan Li +8 more

Optimizing Precision Probiotics for Mitigating Graft-Versus-Host Disease

Microorganisms(2025)10.3390/microorganisms13040706

N/A

0DataRank · unranked

4 citations

Apple Long, Phinga Do, Laura Coughlin, Nicole Poulides, Talia Jewell +4 more

Gut Microbiome Composition and Variance Are Modified by Degree of Growth Failure in Preterm Infants: A Prospective Study

Nutrients(2025)10.3390/nu17243907

N/A

0DataRank · unranked

2 citations

Miranda Green, Xinying Niu, Dongmei Lu, Shuheng Gan, Xiaowei Zhan +8 more

Dimensionality reduction for visualizing spatially resolved profiling data using SpaSNE

GigaScience(2025)10.1093/gigascience/giaf002

N/A

0DataRank · unranked

3 citations

Chen Tang, Xue Xiao, Xiaowei Zhan, Tao Wang, Guanghua Xiao +2 more

Identifying Microbiota and Immune Host Factors Associated With Bleeding Risk in Children With Immune Thrombocytopenia

American Journal of Hematology(2025)10.1002/ajh.27669

N/A

0DataRank · unranked

1 citations

Parastoo Sabaeifard, Laura Coughlin, Nicole Poulides, Shuheng Gan, Xiaowei Zhan +4 more

Timing of immune checkpoint blockade shapes anti-tumor immunity via a clock-dependent chemokine axis

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.03.686293

N/A

0DataRank · unranked

2 citations

Tarun Srinivasan, Ruheng Wang, Chaitanya Dende, Christina Zarek, Jorge H Ramírez +18 more

Erratum: Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis

Nature Communications(2016)10.1038/ncomms13205

N/A

0DataRank · unranked

0 citations

Fan Zhu, Javier García-García, Eli Stahl, Abhishek Pratap, Gaurav Pandey +113 more

VAMPr: VAriant Mapping and Prediction of antibiotic resistance via explainable features and machine learning

PLoS Computational Biology(2020)10.1371/journal.pcbi.1007511

N/A

0DataRank · unranked

77 citations

David E. Greenberg, Reed Pifer, Shuang Jiang, Guanghua Xiao, Samuel A. Shelburne +4 more

The landscape of RNA polymerase II–associated chromatin interactions in prostate cancer

Journal of Clinical Investigation(2020)10.1172/jci134260

N/A

0DataRank · unranked

62 citations

Yong Chen, Jiapei Yuan, Kelly Daescu, Maryou Lambros, Kathleen E. Houlahan +17 more

A transcriptome-wide association study based on 27 tissues identifies 106 genes potentially relevant for disease pathology in age-related macular degeneration

Scientific Reports(2020)10.1038/s41598-020-58510-9

N/A

0DataRank · unranked

63 citations

Susette Lauwen, Christina Kiel, Lars G. Fritsche, Wilmar Igl, Jessica N. Cooke Bailey +95 more

Spatial molecular profiling: platforms, applications and analysis tools

Briefings in Bioinformatics(2020)10.1093/bib/bbaa145

N/A

0DataRank · unranked

51 citations

Thomas Sheffield, Xiaowei Zhan, Qiwei Li, Donghan M. Yang, Yunguan Wang +5 more

Dominant atopy risk mutations identified by mouse forward genetic analysis

Allergy(2020)10.1111/all.14564

N/A

0DataRank · unranked

14 citations

Zhe Chen, Jianhui Wang, Tao Yue, Jin Huk Choi, Kuan-Wen Wang +16 more

HARMONIES: A Hybrid Approach for Microbiome Networks Inference via Exploiting Sparsity

Frontiers in Genetics(2020)10.3389/fgene.2020.00445

N/A

0DataRank · unranked

37 citations

Guanghua Xiao, Andrew Y. Koh, Yingfei Chen, Bo Yao, Qiwei Li +2 more

Seqminer2: an efficient tool to query and retrieve genotypes for statistical genetics analyses from biobank scale sequence dataset

Bioinformatics(2020)10.1093/bioinformatics/btaa628

N/A

0DataRank · unranked

4 citations

Shuang Jiang, Bibo Jiang, Dajiang J. Liu, Xiaowei Zhan, Lina Yang

BayesSMILES: Bayesian Segmentation Modeling for Longitudinal Epidemiological Studies

medRxiv(2020)10.1101/2020.10.06.20208132

N/A

0DataRank · unranked

7 citations

Quan Zhou, Xiaowei Zhan, Qiwei Li, Shuang Jiang

Overcoming Genetic Drop-outs in Variants-based Lineage Tracing from Single-cell RNA Sequencing Data

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.01.892562

N/A

0DataRank · unranked

1 citations

Seongoh Park, James Zhu, Xiaowei Zhan, Xinlei Wang, Hao Zhu +2 more

MB-GAN: Microbiome Simulation via Generative Adversarial Network

GigaScience(2021)10.1093/gigascience/giab005

N/A

0DataRank · unranked

49 citations

Shuang Jiang, Lin Xu, Guanghua Xiao, Yang Xie, Dajiang J. Liu +3 more

Overcoming Expressional Drop-outs in Lineage Reconstruction from Single-Cell RNA-Sequencing Data

Cell Reports(2021)10.1016/j.celrep.2020.108589

N/A

0DataRank · unranked

29 citations

Seongoh Park, James Zhu, Yunguan Wang, Xiaowei Zhan, Xinlei Wang +4 more

Xiaowei Zhan

Indexed papers

Top data-sharing exemplar

Papers