🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Tsukasa Nakamura

Tohoku University

ORCID: 0000-0002-6312-3070

Also affiliated with Purdue University West Lafayette

Biochemistry, Genetics and Molecular BiologyMaterials ScienceSocial Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
6.1Author DataRank

Indexed papers

7in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 7 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment

Proteins Structure Function and Bioinformatics(2021)10.1002/prot.26222
Top 9%
2.3DataRank
Top 9%127 citations

Guillaume Brysbaert, Théo Mauri, Nurul Nadzirin, Sameer Velankar, Raphaël A. G. Chaleil +95 more

Papers

Driven by 13 papers — median percentile 64. Top paper: “Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment”.

Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment

Proteins Structure Function and Bioinformatics(2021)10.1002/prot.26222
Top 9%
2.3DataRank
Top 9%127 citations

Guillaume Brysbaert, Théo Mauri, Nurul Nadzirin, Sameer Velankar, Raphaël A. G. Chaleil +95 more

Impact of AlphaFold on structure prediction of protein complexes: The CASP15‐CAPRI experiment

Proteins Structure Function and Bioinformatics(2023)10.1002/prot.26609
Top 11%
1.9DataRank
Top 11%81 citations

Guillaume Brysbaert, Nessim Raouraoua, Paul A. Bates, Marco Giulini, Rodrigo V. Honorato +95 more

DAQ-Score Database: assessment of map–model compatibility for protein structure models from cryo-EM maps

Nature Methods(2023)10.1038/s41592-023-01876-1
Top 36%
0.544DataRank
Top 36%18 citations

Xiao Wang, Genki Terashi, Daisuke Kihara, Tsukasa Nakamura

Impact of AlphaFold on Structure Prediction of Protein Complexes: The CASP15-CAPRI Experiment

Utrecht University Repository (Utrecht University)(2023)10.22541/au.168888815.53957253/v1
Top 36%
0.540DataRank
Top 36%17 citations

Guillaume Brysbaert, Nessim Raouraoua, Paul A. Bates, Marco Giulini, Rodrigo V. Honorato +95 more

Protein Data Bank Japan: Computational Resources for Analysis of Protein Structures

Journal of Molecular Biology(2025)10.1016/j.jmb.2025.169013
Top 44%
0.424DataRank
Top 44%13 citations

Chioko Nagao, Matsuyuki Shirota, Tsukasa Nakamura, Toshiaki Katayama, Daisuke Kihara +3 more

Protein Data Bank Japan: Improved tools for sequence‐oriented analysis of protein structures

Protein Science(2025)10.1002/pro.70052
Top 49%
0.363DataRank
Top 49%9 citations

Chioko Nagao, Matsuyuki Shirota, Tsukasa Nakamura, Toshiaki Katayama, Daisuke Kihara +3 more

Blind prediction of complex water and ion ensembles around RNA in CASP16

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.03.685595
N/A
0DataRank · unranked
0 citations

Elisa Posani, Eugene F. Baulin, Janusz M. Bujnicki, Giovanni Bussi, Thomas E. Cheatham +46 more

Structure of bacteriophage P1 head provides insight into capsid polymorphism

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.26.689930
N/A
0DataRank · unranked
0 citations

Tsukasa Nakamura, Genki Terashi, Veer S. Bhatt, Kyung-Ho Kim, Shankararaman Chellam +3 more

NuFold: A Novel Tertiary RNA Structure Prediction Method Using Deep Learning with Flexible Nucleobase Center Representation

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.20.558715
N/A
0DataRank · unranked
12 citations

Zicong Zhang, Nabil Ibtehaz, Xiao Wang, Tsukasa Nakamura, David Huang +2 more

SHREC2024: Non-rigid Complementary Shapes Retrieval in Protein-protein Interactions

HAL (Le Centre pour la Communication Scientifique Directe)(2024)10.2312/3dor.20241173
Top 100%
0DataRank
Top 100%0 citations

Н А Зарубина, Camille Depenveiller, Nguyen, Hoang-Phuc, Vong, Vinh-Toan, M-T Tran +6 more

NuFold: end-to-end approach for RNA tertiary structure prediction with flexible nucleobase center representation

Nature Communications(2025)10.1038/s41467-025-56261-7
N/A
0DataRank · unranked
52 citations

Zicong Zhang, Nabil Ibtehaz, Xiao Wang, Tsukasa Nakamura, Pranav Punuru +2 more

AI-based quality assessment methods for protein structure models from cryo-EM

Current Research in Structural Biology(2025)10.1016/j.crstbi.2025.100164
N/A
0DataRank · unranked
6 citations

Genki Terashi, Farhanaz Farheen, Tsukasa Nakamura, Daisuke Kihara, Zhu Han

Blind Prediction of Complex Water and Ion Ensembles Around RNA in CASP16

Proteins Structure Function and Bioinformatics(2025)10.1002/prot.70079
N/A
0DataRank · unranked
1 citations

Elisa Posani, Eugene F. Baulin, Janusz M. Bujnicki, Giovanni Bussi, Thomas E. Cheatham +46 more