William P. Hanage

Center for Disease Dynamics, Economics & Policy

MedicineMathematicsImmunology and MicrobiologyBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 44 papers. Top paper: “The role of interspecies recombination in the evolution of antibiotic-resistant pneumococci”.

The role of interspecies recombination in the evolution of antibiotic-resistant pneumococci

eLife(2021)10.7554/elife.67113

N/A

0.982DataRank · unranked

45 citations

Mark PG van der Linden, Lesley McGee, Hermı́nia de Lencastre, Paul Turner, Jae-Hoon Song +94 more

Previously undetected super-spreading of Mycobacterium tuberculosis revealed by deep sequencing

eLife(2020)10.7554/elife.53245

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0DataRank · unranked

56 citations

Jean‐François Proulx, Fiona McIntosh, Marcel A. Behr, William P. Hanage, Robyn S. Lee

Horizontal gene transfer rate is not the primary determinant of observed antibiotic resistance frequencies in Streptococcus pneumoniae

Science Advances(2020)10.1126/sciadv.aaz6137

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0DataRank · unranked

29 citations

Claire Chewapreecha, John A. Lees, William P. Hanage, Marc Lipsitch, Nicholas J. Croucher +5 more

Frequency-dependent selection can forecast evolution in Streptococcus pneumoniae

PLoS Biology(2020)10.1371/journal.pbio.3000878

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0DataRank · unranked

45 citations

Pamela P. Martinez, Brian Arnold, Xueting Qiu, Lindsay R. Grant, Jukka Corander +11 more

SARS-CoV-2 titers in wastewater foreshadow dynamics and clinical presentation of new COVID-19 cases

medRxiv(2020)10.1101/2020.06.15.20117747

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0DataRank · unranked

139 citations

Amy Xiao, Jianbo Zhang, Katya Moniz, Noriko Endo, Federica Armas +23 more

SARS-CoV-2 epidemic after social and economic reopening in three US states reveals shifts in age structure and clinical characteristics

medRxiv(2020)10.1101/2020.11.17.20232918

N/A

0DataRank · unranked

11 citations

Thu Nguyen-Anh Tran, Bethany Gentilesco, Scott M. Leighow, Joseph Albert, Emily R. Strong +11 more

Evaluating the contributions of strategies to prevent SARS-CoV-2 transmission in the healthcare setting: a modelling study

medRxiv(2020)10.1101/2020.04.20.20073080

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0DataRank · unranked

8 citations

Xueting Qiu, Derek R. MacFadden, William P. Hanage, Joel C. Miller

Negative frequency-dependent selection and asymmetrical transformation stabilise multi-strain bacterial population structures

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.05.118836

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0DataRank · unranked

2 citations

John A. Lees, William P. Hanage, Marc Lipsitch, Jukka Corander, Caroline Colijn +2 more

Leveraging pathogen sequence and contact tracing data to enhance vaccine trials in emerging epidemics

medRxiv(2020)10.1101/2020.09.14.20193789

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0DataRank · unranked

2 citations

Rui Wang, Sarah V. Leavitt, William P. Hanage, Marc Lipsitch, Rebecca Kahn

SARS-CoV-2 RNA concentrations in wastewater foreshadow dynamics and clinical presentation of new COVID-19 cases

The Science of The Total Environment(2021)10.1016/j.scitotenv.2021.150121

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0DataRank · unranked

305 citations

Amy Xiao, Jianbo Zhang, Katya Moniz, Noriko Endo, Federica Armas +23 more

Wastewater surveillance of SARS-CoV-2 across 40 U.S. states from February to June 2020

Water Research(2021)10.1016/j.watres.2021.117400

N/A

0DataRank · unranked

181 citations

Amy Xiao, Jianbo Zhang, Katya Moniz, Noriko Endo, Federica Armas +17 more

Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Sequence Characteristics of Coronavirus Disease 2019 (COVID-19) Persistence and Reinfection

Clinical Infectious Diseases(2021)10.1093/cid/ciab380

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0DataRank · unranked

82 citations

Charles R. Crain, Xueting Qiu, William P. Hanage, Jonathan Z. Li, Manish C. Choudhary

Coronavirus Disease 2019 Vaccine Impact on Rates of Severe Acute Respiratory Syndrome Coronavirus 2 Cases and Postvaccination Strain Sequences Among Health Care Workers at an Urban Academic Medical Center: A Prospective Cohort Study

Open Forum Infectious Diseases(2021)10.1093/ofid/ofab465

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0DataRank · unranked

42 citations

Sara Lodi, Jacquelyn Turcinovic, Beau Schaeffer, Sarah Weber, Emily Quinn +13 more

Negative frequency-dependent selection and asymmetrical transformation stabilise multi-strain bacterial population structures

The ISME Journal(2021)10.1038/s41396-020-00867-w

N/A

0DataRank · unranked

38 citations

John A. Lees, William P. Hanage, Marc Lipsitch, Jukka Corander, Caroline Colijn +2 more

Evaluating the contributions of strategies to prevent SARS-CoV-2 transmission in the healthcare setting: a modelling study

BMJ Open(2021)10.1136/bmjopen-2020-044644

N/A

0DataRank · unranked

19 citations

Joel C. Miller, Derek R. MacFadden, William P. Hanage, Xueting Qiu

Perfect as the enemy of good: tracing transmissions with low-sensitivity tests to mitigate SARS-CoV-2 outbreaks

The Lancet Microbe(2021)10.1016/s2666-5247(21)00004-5

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0DataRank · unranked

17 citations

Michael Baym, William P. Hanage, Lee Kennedy‐Shaffer

Coming to America: Genomic surveillance and how B.1.1.7 arrived in the US

Cell(2021)10.1016/j.cell.2021.04.031

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0DataRank · unranked

3 citations

William P. Hanage, Bradford P. Taylor, Xueting Qiu

Variant abundance estimation for SARS-CoV-2 in wastewater using RNA-Seq quantification

medRxiv(2021)10.1101/2021.08.31.21262938

N/A

0DataRank · unranked

37 citations

Alessandro Zulli, Isabel M. Ott, Mary E. Petrone, Tara Alpert, Joseph R. Fauver +21 more

Wastewater Surveillance of SARS-CoV-2 across 40 U.S. states

medRxiv(2021)10.1101/2021.03.10.21253235

N/A

0DataRank · unranked

33 citations

Amy Xiao, Jianbo Zhang, Katya Moniz, Noriko Endo, Federica Armas +17 more

COVID-19 vaccine impact on rates of SARS-CoV-2 cases and post vaccination strain sequences among healthcare workers at an urban academic medical center: a prospective cohort study

medRxiv(2021)10.1101/2021.03.30.21254655

N/A

0DataRank · unranked

33 citations

Sara Lodi, Jacquelyn Turcinovic, Sarah Weber, Emily Quinn, Cathy Korn +13 more

Metrics to relate COVID-19 wastewater data to clinical testing dynamics

medRxiv(2021)10.1101/2021.06.10.21258580

N/A

0DataRank · unranked

20 citations

Fuqing Wu, Mary Bushman, Jianbo Zhang, Maxim Imakaev, Peter R. Chai +18 more

SARS-CoV-2 Sequence Characteristics of COVID-19 Persistence and Reinfection

medRxiv(2021)10.1101/2021.03.02.21252750

N/A

0DataRank · unranked

19 citations

Charles R. Crain, Xueting Qiu, William P. Hanage, Jonathan Z. Li, Manish C. Choudhary

Evidence of transmission from fully vaccinated individuals in a large outbreak of the SARS-CoV-2 Delta variant in Provincetown, Massachusetts

medRxiv(2021)10.1101/2021.10.20.21265137

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0DataRank · unranked

9 citations

Lydia A. Krasilnikova, Gage K. Moreno, S. F. Schaffner, Johanna Vostok, Nicholas FitzGerald +75 more

SARS-CoV-2 attack rate and population immunity in southern New England, March 2020 - May 2021

medRxiv(2021)10.1101/2021.12.06.21267375

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0DataRank · unranked

3 citations

Nathan B. Wikle, Fuhan Yang, Haider Inam, Scott M. Leighow, Bethany Gentilesco +9 more

Metrics to relate COVID-19 wastewater data to clinical testing dynamics

Water Research(2022)10.1016/j.watres.2022.118070

N/A

0DataRank · unranked

120 citations

Fuqing Wu, Mary Bushman, Jianbo Zhang, Maxim Imakaev, Peter R. Chai +18 more

Lineage abundance estimation for SARS-CoV-2 in wastewater using transcriptome quantification techniques

Genome biology(2022)10.1186/s13059-022-02805-9

N/A

0DataRank · unranked

55 citations

Alessandro Zulli, Isabel M. Ott, Ioanna Nika, Mart J. van der Lugt, Mary E. Petrone +48 more

Causal discovery for the microbiome

The Lancet Microbe(2022)10.1016/s2666-5247(22)00186-0

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0DataRank · unranked

42 citations

William P. Hanage, Johan Pensar, Jukka Corander

Early Introduction and Rise of the Omicron Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Variant in Highly Vaccinated University Populations

Clinical Infectious Diseases(2022)10.1093/cid/ciac413

N/A

0DataRank · unranked

34 citations

Jacquelyn Turcinovic, Nicole L Welch, Laura F. White, Eric D. Kolaczyk, Matthew R. Bauer +25 more

The evolving roles of US political partisanship and social vulnerability in the COVID-19 pandemic from February 2020–February 2021

PLOS Global Public Health(2022)10.1371/journal.pgph.0000557

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0DataRank · unranked

22 citations

Christian Testa, Jarvis T. Chen, Lucas M. Stolerman, Nancy Krieger, William P. Hanage +2 more

Understanding Early Pandemic Severe Acute Respiratory Syndrome Coronavirus 2 Transmission in a Medical Center by Incorporating Public Sequencing Databases to Mitigate Bias

The Journal of Infectious Diseases(2022)10.1093/infdis/jiac348

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0DataRank · unranked

3 citations

Beau Schaeffer, Bradford P. Taylor, Tara C. Bouton, Aubrey R. Odom-Mabey, Sarah Weber +6 more

Estimated preventable COVID-19-associated deaths due to non-vaccination in the United States

Research Square(2022)10.21203/rs.3.rs-2285978/v1

N/A

0DataRank · unranked

8 citations

William P. Hanage, Marc Lipsitch, Amelia G. Johnson, Avnika B. Amin, Akilah R. Ali +3 more

Beyond consensus sequence: a quantitative scheme for inferring transmission using deep sequencing in a bacterial transmission model

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.17.512634

N/A

0DataRank · unranked

0 citations

Hannah Read, Priyali Oza, Sarah H. Johnson, Hemanoel Passarelli‐Araujo, Bradford P. Taylor +9 more

Beyond consensus sequence: a quantitative scheme for inferring transmission using deep sequencing in a bacterial transmission model

Research Square(2022)10.21203/rs.3.rs-2228167/v1

N/A

0DataRank · unranked

0 citations

Hannah Read, Priyali Oza, Sarah H. Johnson, Hemanoel Passarelli‐Araujo, Bradford P. Taylor +9 more

Estimated preventable COVID-19-associated deaths due to non-vaccination in the United States

European Journal of Epidemiology(2023)10.1007/s10654-023-01006-3

N/A

0DataRank · unranked

40 citations

William P. Hanage, Marc Lipsitch, Amelia G. Johnson, Avnika B. Amin, Akilah R. Ali +3 more

Quantitatively assessing early detection strategies for mitigating COVID-19 and future pandemics

Nature Communications(2023)10.1038/s41467-023-44199-7

N/A

0DataRank · unranked

22 citations

Daniel Lee, Amogh P. Jalihal, William P. Hanage, Michael Springer, Andrew Bo Liu

Inferring bacterial transmission dynamics using deep sequencing genomic surveillance data

Nature Communications(2023)10.1038/s41467-023-42211-8

N/A

0DataRank · unranked

8 citations

Hannah Read, Priyali Oza, Sarah H. Johnson, Hemanoel Passarelli‐Araujo, Bradford P. Taylor +9 more

Prediction of post-PCV13 pneumococcal evolution using invasive disease data enhanced by inverse-invasiveness weighting

medRxiv(2023)10.1101/2023.12.10.23299786

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0DataRank · unranked

3 citations

Lesley McGee, Laura L. Hammitt, Lindsay R. Grant, Katherine O’Brien, William P. Hanage +2 more

Addressing spatial misalignment in population health research: a case study of US congressional district political metrics and county health data

medRxiv(2023)10.1101/2023.01.10.23284410

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0DataRank · unranked

2 citations

Christian Testa, Loni Philip Tabb, William P. Hanage, Jarvis T. Chen, Nancy Krieger +1 more

Quantitatively assessing early detection strategies for mitigating COVID-19 and future pandemics

medRxiv(2023)10.1101/2023.06.08.23291050

N/A

0DataRank · unranked

2 citations

Daniel Lee, Amogh P. Jalihal, William P. Hanage, Michael Springer, Andrew Bo Liu

Prediction of post-PCV13 pneumococcal evolution using invasive disease data enhanced by inverse-invasiveness weighting

mBio(2024)10.1128/mbio.03355-23

N/A

0DataRank · unranked

4 citations

Lesley McGee, Laura L. Hammitt, Lindsay R. Grant, Katherine L. O’Brien, William P. Hanage +2 more

Characterisation of a persistent SARS-CoV-2 infection lasting more than 750 days in a person living with HIV: a genomic analysis

The Lancet Microbe(2025)10.1016/j.lanmic.2025.101122

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0DataRank · unranked

6 citations

Beau Schaeffer, Scott Curry, Victoria Overbeck, Cole Sher-Jan, Bradford P. Taylor +5 more

Linkage-based ortholog refinement in bacterial pangenomes with CLARC

Nucleic Acids Research(2025)10.1093/nar/gkaf488

N/A

0DataRank · unranked

1 citations

Samantha G. Palace, Pamela P. Martinez, Taj Azarian, Lindsay R. Grant, Laura L. Hammitt +3 more

Rapid inference of antibiotic resistance and susceptibility by genomic neighbour typing

Nature Microbiology(2020)10.1038/s41564-019-0656-6

N/A

0DataRank · unranked

109 citations

Alanna Callendrello, C. Kevin, Derek R. MacFadden, Themoula Charalampous, Robyn S Lee +8 more

The Potential Effect of Ending CDC Funding for HIV Tests: A Modeling Study in 18 States

medRxiv(2025)10.1101/2025.09.19.25336182

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0DataRank · unranked

1 citations

Melissa Schnure, Ryan Forster, William P. Hanage, D. Scott Batey, Keri N. Althoff +6 more