🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Nathan R. Zemke

UC San Diego Health System

ORCID: 0000-0002-6326-5925

Also affiliated with University of California San Diego, Epigenomics (Germany)

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile
3.9Author DataRank

Indexed papers

4in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A comparative atlas of single-cell chromatin accessibility in the human brain

Science(2023)10.1126/science.adf7044
Top 7%
3.2DataRank
Top 7%159 citations

Sebastian Preissl, Michael Miller, Nicholas D. Johnson, Zihan Wang, Henry Jiao +34 more

Papers

Driven by 15 papers — median percentile 41. Top paper: “A comparative atlas of single-cell chromatin accessibility in the human brain”.

A comparative atlas of single-cell chromatin accessibility in the human brain

Science(2023)10.1126/science.adf7044
Top 7%
3.2DataRank
Top 7%159 citations

Sebastian Preissl, Michael Miller, Nicholas D. Johnson, Zihan Wang, Henry Jiao +34 more

Conserved and divergent gene regulatory programs of the mammalian neocortex

Nature(2023)10.1038/s41586-023-06819-6
N/A
1.9DataRank · unranked
113 citations

Ethan J. Armand, Wenliang Wang, Seo Yeon Lee, Jingtian Zhou, Yang Eric Li +28 more

A fast, scalable and versatile tool for analysis of single-cell omics data

Nature Methods(2024)10.1038/s41592-023-02139-9
N/A
0.771DataRank · unranked
170 citations

Nathan R. Zemke, Ethan J. Armand, Bing Ren, Kai Zhang

Integrative analysis of the 3D genome and epigenome in mouse embryonic tissues

Nature Structural & Molecular Biology(2024)10.1038/s41594-024-01431-2
Top 40%
0.482DataRank
Top 40%7 citations

Nathan R. Zemke, Ziyin Chen, Ivan Jurić, Rong Hu, Ramya Raviram +16 more

Evaluating methods for the prediction of cell-type-specific enhancers in the mammalian cortex

Cell Genomics(2025)10.1016/j.xgen.2025.100879
N/A
0.425DataRank · unranked
16 citations

Niklas Kempynck, Nathan R. Zemke, Saroja Somasundaram, Seppe De Winter, Marcus Hooper +29 more

Reduction of ZFX levels decreases histone H4 acetylation and increases Pol2 pausing at target promoters

Nucleic Acids Research(2024)10.1093/nar/gkae372
N/A
0.228DataRank · unranked
3 citations

Katherine Hutchison, Yao Liu, Charles M. Nicolet, Shannon Schreiner, Nathan R. Zemke +2 more

Single-cell multiomic human brain atlas reveals regulatory drivers of cortical regionality

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.07.667992
Top 78%
0.104DataRank
Top 78%1 citations

Jinghui Song, Bing Yang, Chien-Ju Chen, Dinh Diep, Kimberly Y. Conklin +17 more

Integrative analysis of the 3D genome and epigenome in mouse embryonic tissues

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.25.489471
Top 78%
0.104DataRank
Top 78%1 citations

Nathan R. Zemke, Ziyin Chen, Ivan Jurić, Rong Hu, Ramya Raviram +15 more

Epigenetic and 3D genome reprogramming during the aging of human hippocampus

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.14.618338
N/A
0DataRank · unranked
7 citations

Seo Yeon Lee, Sainath Mamde, Bing Yang, Nicole Berchtold, B. Maximiliano Garduño +16 more

Evaluating Methods for the Prediction of Cell Type-Specific Enhancers in the Mammalian Cortex

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.08.21.609075
N/A
0DataRank · unranked
4 citations

Niklas Kempynck, Nathan R. Zemke, Saroja Somasundaram, Seppe De Winter, Marcus Hooper +29 more

Cell-type-specific 3D-genome organization and transcription regulation in the brain

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.04.570024
N/A
0DataRank · unranked
12 citations

Pu Zheng, Cosmos Yuqi Wang, Bojing Blair Jia, Nathan R. Zemke, Bing Ren +2 more

Multi-layered transcriptional control of glycogen metabolism coordinates thermogenic remodeling of white adipocytes in male mice

Nature Communications(2025)10.1038/s41467-025-67515-9
N/A
0DataRank · unranked
1 citations

Seo Yeon Lee, Nathan R. Zemke, Weiwei Fan, Yunqing Wang, Jorge R. Kawas Garza . +12 more

Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.09.632202
N/A
0DataRank · unranked
12 citations

Shuzhen Kuang, Shu Zhang, Abraham J. Horrillo, Kavitha S. Rao, Vasumathi Kameswaran +11 more

Persistent Activation of Endothelial Cells is Linked to Thrombosis and Inflammation in Cerebral Cavernous Malformation Disease

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.29.662238
N/A
0DataRank · unranked
2 citations

Eduardo Frías-Anaya, Cassandra Bui, Louie Zhao, Emily Hsu, Hannah S. Indralingam +6 more

Comparative single cell epigenomic analysis of gene regulatory programs in the rodent and primate neocortex

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.08.536119
N/A
0DataRank · unranked
4 citations

Ethan J. Armand, Wenliang Wang, Seo Yeon Lee, Jingtian Zhou, Yang Eric Li +23 more