Aarthi Ramakrishnan

Also affiliated with Icahn School of Medicine at Mount Sinai

NeuroscienceBiochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 41 papers. Top paper: “Circulating myeloid-derived MMP8 in stress susceptibility and depression”.

Circulating myeloid-derived MMP8 in stress susceptibility and depression

Nature(2024)10.1038/s41586-023-07015-2

N/A

4.0DataRank · unranked

163 citations

Hsiao‐Yun Lin, Kenny L. Chan, Long Li, Lyonna F. Parise, Johana Alvarez +25 more

Histone H3 serotonylation dynamics in dorsal raphe nucleus contribute to stress- and antidepressant-mediated gene expression and behavior

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.04.539464

N/A

0.353DataRank · unranked

7 citations

Sasha L. Fulton, Giuseppina Di Salvo, Jennifer C Chan, Lorna A. Farrelly, Ashley E. Lepack +15 more

Chronic Intermittent Hypoxia Enhances Pathological Tau Seeding, Propagation, and Accumulation and Exacerbates Alzheimer-like Memory and Synaptic Plasticity Deficits and Molecular Signatures

Biological Psychiatry(2021)10.1016/j.biopsych.2021.02.973

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0DataRank · unranked

66 citations

Abhijeet Sharma, Sivaprakasam R. Saroja, Joon Ho Seo, Chloe S. Larson, Aarthi Ramakrishnan +10 more

Prenatal Δ9-Tetrahydrocannabinol Exposure in Males Leads to Motivational Disturbances Related to Striatal Epigenetic Dysregulation

Biological Psychiatry(2021)10.1016/j.biopsych.2021.09.017

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0DataRank · unranked

56 citations

Anissa Bara, Claudia A. Vargas, Amy L. Frick, Eddie Loh, Joseph A. Landry +10 more

Plexin-B2 orchestrates collective stem cell dynamics via actomyosin contractility, cytoskeletal tension and adhesion

Nature Communications(2021)10.1038/s41467-021-26296-7

N/A

0DataRank · unranked

52 citations

Rafael Dariolli, Jonathan C. Haydak, Sangjo Kang, Theodore Hannah, Robert J. Wiener +14 more

Sex-Specific Role for SLIT1 in Regulating Stress Susceptibility

Biological Psychiatry(2021)10.1016/j.biopsych.2021.01.019

N/A

0DataRank · unranked

26 citations

Casey K. Lardner, Eric M. Parise, Philipp Mews, Aarthi Ramakrishnan, Vishwendra Patel +17 more

Chromatin Remodelers Interact with Eya1 and Six2 to Target Enhancers to Control Nephron Progenitor Cell Maintenance

Journal of the American Society of Nephrology(2021)10.1681/asn.2021040525

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0DataRank · unranked

19 citations

Jin Xu, Huihui Jiang, Ting Zhang, Aarthi Ramakrishnan, Li Shen +2 more

TGM2-mediated histone transglutamination is dictated by steric accessibility

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2208672119

N/A

0DataRank · unranked

40 citations

Michelle M. Mitchener, Lingchun Kong, Barbara E. Dul, Cole D. Lazarus, Aarthi Ramakrishnan +5 more

Chromatin profiling in human neurons reveals aberrant roles for histone acetylation and BET family proteins in schizophrenia

Nature Communications(2022)10.1038/s41467-022-29922-0

N/A

0DataRank · unranked

37 citations

Shuangping Zheng, Nadine Schrode, Aaron Topol, Natarajan V. Bhanu, Ryan M. Bastle +12 more

Rescue of deficits by Brwd1 copy number restoration in the Ts65Dn mouse model of Down syndrome

Nature Communications(2022)10.1038/s41467-022-34200-0

N/A

0DataRank · unranked

25 citations

Wendy Wenderski, Ashley E. Lepack, Andrew L. Eagle, Tomas Fanutza, Ryan M. Bastle +22 more

Crystallin Mu in Medial Amygdala Mediates the Effect of Social Experience on Cocaine Seeking in Males but Not in Females

Biological Psychiatry(2022)10.1016/j.biopsych.2022.06.026

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0DataRank · unranked

21 citations

Xianxiao Zhou, Ashley M. Cunningham, Aarthi Ramakrishnan, Hannah M. Cates, Casey K. Lardner +15 more

The transcriptional coactivator Eya1 exerts transcriptional repressive activity by interacting with REST corepressors and REST-binding sequences to maintain nephron progenitor identity

Nucleic Acids Research(2022)10.1093/nar/gkac760

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0DataRank · unranked

14 citations

Chunming Cheng, Jin Xu, Ting Zhang, Bengü Tokat, Georgia Dolios +5 more

Sex-biased effects on hippocampal circuit development by perinatal SERT expression in CA3 pyramidal neurons

Development(2022)10.1242/dev.200549

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0DataRank · unranked

9 citations

Galadu Subah, Jennifer C Chan, Luisa Speranza, Xiaolei Zhang, Aarthi Ramakrishnan +5 more

CREB Binding at the Zfp189 Promoter Within Medium Spiny Neuron Subtypes Differentially Regulates Behavioral and Physiological Adaptations Over the Course of Cocaine Use

Biological Psychiatry(2022)10.1016/j.biopsych.2022.07.022

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0DataRank · unranked

17 citations

Joseph A. Picone, William J. Wright, Caleb J Browne, Gabriella M. Silva, Rita Futamura +16 more

Histone monoaminylation dynamics are regulated by a single enzyme and promote neural rhythmicity

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.06.519310

N/A

0DataRank · unranked

18 citations

Ryan M. Bastle, Shuai Zhao, Lingchun Kong, Lauren E. Vostal, Aarthi Ramakrishnan +15 more

Spatial patterning and immunosuppression of glioblastoma immune contexture in hypoxic niches

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.01.482530

N/A

0DataRank · unranked

2 citations

Sangjo Kang, Zhihong Chen, Valerie Marallano, Concetta Brusco, Aarthi Ramakrishnan +5 more

Hypoxic niches attract and sequester tumor-associated macrophages and cytotoxic T cells and reprogram them for immunosuppression

Immunity(2023)10.1016/j.immuni.2023.06.017

N/A

0DataRank · unranked

248 citations

Sangjo Kang, Bruno Giotti, Zhihong Chen, Valerie Marallano, Concetta Brusco +7 more

Convergent abnormalities in striatal gene networks in human cocaine use disorder and mouse cocaine administration models

Science Advances(2023)10.1126/sciadv.add8946

N/A

0DataRank · unranked

62 citations

Ashley M. Cunningham, Joseph R. Scarpa, Aarthi Ramakrishnan, Emily M. Hicks, Sarah Bolnick +5 more

Transcriptional signatures of heroin intake and relapse throughout the brain reward circuitry in male mice

Science Advances(2023)10.1126/sciadv.adg8558

N/A

0DataRank · unranked

46 citations

Rita Futamura, Angélica Minier-Toribio, Emily M. Hicks, Aarthi Ramakrishnan, Freddyson J. Martínez-Rivera +12 more

Circadian clock regulator Bmal1 gates axon regeneration via Tet3 epigenetics in mouse sensory neurons

Nature Communications(2023)10.1038/s41467-023-40816-7

N/A

0DataRank · unranked

17 citations

Yiqun Wang, Aarthi Ramakrishnan, Molly Estill, Xijing He, Li Shen +3 more

Oxycodone withdrawal induces HDAC1/HDAC2-dependent transcriptional maladaptations in the reward pathway in a mouse model of peripheral nerve injury

Nature Neuroscience(2023)10.1038/s41593-023-01350-3

N/A

0DataRank · unranked

21 citations

Randal A. Serafini, Aarthi Ramakrishnan, Andrew Nicolais, Ilinca M. Giosan, Claire Polizu +15 more

Monomethylation of Lysine 27 at Histone 3 Confers Lifelong Susceptibility to Stress

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.08.539829

N/A

0DataRank · unranked

11 citations

Molly Estill, Aarthi Ramakrishnan, Hope Kronman, Vishwendra Patel, Angélica Minier-Toribio +13 more

ZBTB7A regulates MDD-specific chromatin signatures and astrocyte-mediated stress vulnerability in orbitofrontal cortex

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.04.539425

N/A

0DataRank · unranked

6 citations

Jaroslav Bendl, Isabel Gameiro‐Ros, John F. Fullard, Amni Al-Kachak, Ashley E. Lepack +21 more

AhR restricts axon regeneration by balancing neuronal stress and growth response after injury

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.04.565649

N/A

0DataRank · unranked

5 citations

Yiqun Wang, Jiaxi Li, Daniel Halpérin, Haofei Ni, Molly Estill +7 more

Serotonin transporter-dependent histone serotonylation in placenta contributes to the neurodevelopmental transcriptome

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.14.567020

N/A

0DataRank · unranked

3 citations

Natália Alenina, Ashley M. Cunningham, Aarthi Ramakrishnan, Li Shen, Michael Bäder +2 more

Peripheral immune-derived matrix metalloproteinase promotes stress susceptibility

Research Square(2023)10.21203/rs.3.rs-1647827/v1

N/A

0DataRank · unranked

2 citations

Flurin Cathomas, Hsiao‐Yun Lin, Kenny L. Chan, Long Li, Romain Durand-de Cuttoli +21 more

Histone serotonylation in dorsal raphe nucleus contributes to stress- and antidepressant-mediated gene expression and behavior

Nature Communications(2024)10.1038/s41467-024-49336-4

N/A

0DataRank · unranked

46 citations

G. Salvo, Sasha L. Fulton, Jennifer C Chan, Lorna A. Farrelly, Ashley E. Lepack +15 more

Serotonin Transporter-dependent Histone Serotonylation in Placenta Contributes to the Neurodevelopmental Transcriptome

Journal of Molecular Biology(2024)10.1016/j.jmb.2024.168454

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0DataRank · unranked

30 citations

Natália Alenina, Ashley M. Cunningham, Aarthi Ramakrishnan, Li Shen, Michael Bäder +2 more

Hypoxia drives shared and distinct transcriptomic changes in two invasive glioma stem cell lines

Scientific Reports(2024)10.1038/s41598-024-56102-5

N/A

0DataRank · unranked

27 citations

Mary Ughetta, Rut Tejero, Sidhanta Nanda, Rohana Ramalingam, Lauren Stalbow +10 more

Mono-methylation of lysine 27 at histone 3 confers lifelong susceptibility to stress

Neuron(2024)10.1016/j.neuron.2024.06.006

N/A

0DataRank · unranked

26 citations

Molly Estill, Vishwendra Patel, Aarthi Ramakrishnan, Hope Kronman, Angélica Minier-Toribio +13 more

Cell type–specific epigenetic priming of gene expression in nucleus accumbens by cocaine

Science Advances(2024)10.1126/sciadv.ado3514

N/A

0DataRank · unranked

20 citations

Yentl Y. van der Zee, Ashik Gurung, Molly Estill, Rita Futamura, Hope Kronman +9 more

DeepRegFinder: deep learning-based regulatory elements finder

Bioinformatics Advances(2024)10.1093/bioadv/vbae007

N/A

0DataRank · unranked

5 citations

George Wangensteen, Sarah Kim, Eric J. Nestler, Li Shen, Aarthi Ramakrishnan

RGS4 Actions in Mouse Prefrontal Cortex Modulate Behavioral and Transcriptomic Responses to Chronic Stress and Ketamine

Molecular Pharmacology(2024)10.1124/molpharm.123.000753

N/A

0DataRank · unranked

3 citations

Anne Ruiz, Claire Polizu, Zahra Farzinpour, Aarthi Ramakrishnan, Randal A. Serafini +10 more

Desipramine induces anti-inflammatory dorsal root ganglion transcriptional signatures in the murine spared nerve injury model

Neurobiology of Pain(2024)10.1016/j.ynpai.2024.100153

N/A

0DataRank · unranked

1 citations

Aarthi Ramakrishnan, Li Shen, Venetia Zachariou, Randal A. Serafini

Chromatin accessibility and H3K9me3 landscapes reveal long-term epigenetic effects of fetal-neonatal iron deficiency in rat hippocampus

BMC Genomics(2024)10.1186/s12864-024-10230-4

N/A

0DataRank · unranked

0 citations

Aarthi Ramakrishnan, Li Shen, Jonathan C. Gewirtz, Michael Georgieff, Phu V. Tran +1 more

Bidirectional histone monoaminylation dynamics regulate neural rhythmicity

Nature(2025)10.1038/s41586-024-08371-3

N/A

0DataRank · unranked

50 citations

Benjamin H. Weekley, David A. Vinson, Shuai Zhao, Ryan M. Bastle, Robert E. Thompson +24 more

Major-depressive-disorder-associated dysregulation of ZBTB7A in orbitofrontal cortex promotes astrocyte-mediated stress susceptibility

Neuron(2025)10.1016/j.neuron.2025.05.023

N/A

0DataRank · unranked

7 citations

Jaroslav Bendl, G. Salvo, John F. Fullard, Amni Al-Kachak, Ashley E. Lepack +24 more

The SWI/SNF-related protein SMARCA3 is a histone H3K23 ubiquitin ligase that regulates H3K9me3 in cancer

Molecular Cell(2025)10.1016/j.molcel.2025.06.020

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0DataRank · unranked

7 citations

Jakob M. Hebert, Rochelle L. Tiedemann, Qingzeng Gao, Yang Xiao, Nicholas Adrian Prescott +11 more

Dynamic changes in cis-regulatory occupancy by Six1 and its cooperative interactions with distinct cofactors drive lineage-specific gene expression programs during progressive differentiation of the auditory sensory epithelium

Nucleic Acids Research(2020)10.1093/nar/gkaa012

N/A

0DataRank · unranked

53 citations

Ting Zhang, Aarthi Ramakrishnan, Bernd Fritzsch, Jin Xu, Elaine Y.M. Wong +5 more

Molecular signatures of regional vulnerability to tauopathy in excitatory cortical neurons

Acta Neuropathologica(2025)10.1007/s00401-025-02879-2

N/A

0DataRank · unranked

5 citations

Abhijeet Sharma, Aarthi Ramakrishnan, Anjalika Chongtham, Dorothee M. Günther, Saraswathi Subramaniyan +10 more

Diversified transcriptional responses of myeloid and glial cells in spinal cord injury shaped by HDAC3 activity

Science Advances(2021)10.1126/sciadv.abd8811

N/A

0DataRank · unranked

69 citations

Xianxiao Zhou, Xiang Zhou, Lei Guo, Marie-Sophie Friedl, Michael Kluge +7 more