Ray Luo

Also affiliated with University of California System, Division of Materials Science and Engineering, Irvine University

Biochemistry, Genetics and Molecular BiologyMaterials SciencePhysics and Astronomy

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 36 papers. Top paper: “The Amber biomolecular simulation programs”.

The Amber biomolecular simulation programs

Journal of Computational Chemistry(2005)10.1002/jcc.20290

N/A

1.4DataRank · unranked

9524 citations

Thomas E. Cheatham, Tom Darden, Holger Gohlke, Ray Luo, Kenneth M. Merz +6 more

Environment-Specific Force Field for Intrinsically Disordered and Ordered Proteins

Journal of Chemical Information and Modeling(2020)10.1021/acs.jcim.0c00059

N/A

0DataRank · unranked

76 citations

Hao Liu, Ray Luo, Haifeng Chen, Song Dong

Leveraging Oxidative Stress to Regulate Redox Balance-Based, In Vivo Growth Selections for Oxygenase Engineering

ACS Synthetic Biology(2020)10.1021/acssynbio.0c00380

N/A

0DataRank · unranked

22 citations

Edward J. King, Yulai Zhang, Ray Luo, Han Li, Sarah Maxel

Molecular Basis for Polyketide Ketoreductase–Substrate Interactions

International Journal of Molecular Sciences(2020)10.3390/ijms21207562

N/A

0DataRank · unranked

30 citations

Fanglue Ni, Tianyin Qiu, J. Wolff, Shiou‐Chuan Tsai, Ray Luo +1 more

In Vivo, High-Throughput Selection of Thermostable Cyclohexanone Monooxygenase (CHMO)

Catalysts(2020)10.3390/catal10080935

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0DataRank · unranked

5 citations

Linyue Zhang, Edward J. King, Ana Paula Acosta, Ray Luo, Han Li +1 more

Pairing two growth-based, high-throughput selections to fine tune conformational dynamics in oxygenase engineering

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.22.111575

N/A

0DataRank · unranked

1 citations

Linyue Zhang, Edward J. King, Derek Aspacio, Ana Paula Acosta, Ray Luo +2 more

Development of a Pantetheine Force Field Library for Molecular Modeling

Journal of Chemical Information and Modeling(2021)10.1021/acs.jcim.0c01384

N/A

0DataRank · unranked

21 citations

Andrew J. Schaub, Shiou‐Chuan Tsai, Ray Luo, Shiji Zhao

Growth-Based, High-Throughput Selection for NADH Preference in an Oxygen-Dependent Biocatalyst

ACS Synthetic Biology(2021)10.1021/acssynbio.1c00258

N/A

0DataRank · unranked

18 citations

Samer Saleh, Edward J. King, Derek Aspacio, Linyue Zhang, Ray Luo +2 more

Directed evolution of phosphite dehydrogenase to cycle noncanonical redox cofactors via universal growth selection platform

Nature Communications(2022)10.1038/s41467-022-32727-w

N/A

0DataRank · unranked

46 citations

Edward J. King, W. B. Black, Christian M. Heckmann, Allison E. Wolder, Youtian Cui +6 more

Engineering Embden–Meyerhof–Parnas Glycolysis to Generate Noncanonical Reducing Power

ACS Catalysis(2022)10.1021/acscatal.2c01837

N/A

0DataRank · unranked

24 citations

Youtian Cui, Derek Aspacio, Frances Nicklen, Linyue Zhang, Sarah Maxel +5 more

Orthogonal glycolytic pathway enables directed evolution of noncanonical cofactor oxidase

Nature Communications(2022)10.1038/s41467-022-35021-x

N/A

0DataRank · unranked

22 citations

Sarah Maxel, Yulai Zhang, Karissa C. Kenney, Youtian Cui, Emma Luu +5 more

Stress tensor and constant pressure simulation for polarizable Gaussian multipole model

The Journal of Chemical Physics(2022)10.1063/5.0082548

N/A

0DataRank · unranked

18 citations

Piotr Cieplak, Yong Duan, Ray Luo, Haixin Wei

Accurate Reproduction of Quantum Mechanical Many-Body Interactions in Peptide Main-Chain Hydrogen-Bonding Oligomers by the Polarizable Gaussian Multipole Model

Journal of Chemical Theory and Computation(2022)10.1021/acs.jctc.2c00710

N/A

0DataRank · unranked

17 citations

Haixin Wei, Piotr Cieplak, Yong Duan, Ray Luo, Shiji Zhao

AmberTools

Journal of Chemical Information and Modeling(2023)10.1021/acs.jcim.3c01153

N/A

0DataRank · unranked

1916 citations

Hasan Metin Aktulga, Kellon Belfon, David S. Cerutti, G. Andrés Cisneros, Vinícius Wilian D. Cruzeiro +42 more

Target deconvolution with matrix-augmented pooling strategy reveals cell-specific drug-protein interactions

Cell chemical biology(2023)10.1016/j.chembiol.2023.08.002

N/A

0DataRank · unranked

20 citations

Xue Lu, Shiji Zhao, Qiqi Wang, Bin Liao, Ludwig G. Bauer +5 more

Transferability of the Electrostatic Parameters of the Polarizable Gaussian Multipole Model

Journal of Chemical Theory and Computation(2023)10.1021/acs.jctc.2c01048

N/A

0DataRank · unranked

15 citations

Piotr Cieplak, Yong Duan, Ray Luo, Shiji Zhao

Optimal Scheme to Achieve Energy Conservation in Induced Dipole Models

Journal of Chemical Theory and Computation(2023)10.1021/acs.jctc.3c00226

N/A

0DataRank · unranked

12 citations

Shiji Zhao, Piotr Cieplak, Yong Duan, Ray Luo, Haixin Wei +1 more

Streamlining and Optimizing Strategies of Electrostatic Parameterization

Journal of Chemical Theory and Computation(2023)10.1021/acs.jctc.3c00659

N/A

0DataRank · unranked

11 citations

Yongxian Wu, Shiji Zhao, Piotr Cieplak, Yong Duan, Ray Luo +1 more

Understanding and Fine Tuning the Propensity of ATP-Driven Liquid-Liquid Phase Separation with Oligolysine

ChemRxiv(2023)10.26434/chemrxiv-2023-2fl3h

N/A

0DataRank · unranked

1 citations

Yongxian Wu, Ray Luo, Qiang Zhu

Shifting redox reaction equilibria on demand using an orthogonal redox cofactor

Nature Chemical Biology(2024)10.1038/s41589-024-01702-5

N/A

0DataRank · unranked

35 citations

Yulai Zhang, Youtian Cui, Emma Luu, Edward J. King, W. B. Black +7 more

Functional annotation of the Hippo pathway somatic mutations in human cancers

Nature Communications(2024)10.1038/s41467-024-54480-y

N/A

0DataRank · unranked

14 citations

Zhen Huang, Congsheng Xu, Gayoung Seo, Jeongmin An, Bing Yang +15 more

Assessment of Amino Acid Electrostatic Parametrizations of the Polarizable Gaussian Multipole Model

Journal of Chemical Theory and Computation(2024)10.1021/acs.jctc.3c01347

N/A

0DataRank · unranked

8 citations

Piotr Cieplak, Yong Duan, Ray Luo, Shiji Zhao

Targeting SHP2 Cryptic Allosteric Sites for Effective Cancer Therapy

International Journal of Molecular Sciences(2024)10.3390/ijms25116201

N/A

0DataRank · unranked

2 citations

Cizhang Zhao, Yongxian Wu, Qiang Zhu, Ray Luo, Ashfaq Ur Rehman

Map conformational landscapes of intrinsically disordered proteins with polymer physics quantities

Biophysical Journal(2024)10.1016/j.bpj.2024.04.010

N/A

0DataRank · unranked

1 citations

Jesse D. Ziebarth, Caleb E Gallops, Ray Luo, Zhengxin Li, Haifeng Chen +2 more

Understanding and fine tuning the propensity of ATP-driven liquid–liquid phase separation with oligolysine

Physical Chemistry Chemical Physics(2024)10.1039/d4cp00761a

N/A

0DataRank · unranked

3 citations

Yongxian Wu, Ray Luo, Qiang Zhu

Targeting SHP2 Cryptic Allosteric Sites for Effective Cancer Therapy

ChemRxiv(2024)10.26434/chemrxiv-2024-b444c

N/A

0DataRank · unranked

3 citations

Cizhang Zhao, Yongxian Wu, Qiang Zhu, Ray Luo, Ashfaq Ur Rehman

Targeting SHP2 Cryptic Allosteric Sites for Effective Cancer Therapy

ChemRxiv(2024)10.26434/chemrxiv-2024-b444c-v2

N/A

0DataRank · unranked

2 citations

Cizhang Zhao, Yongxian Wu, Qiang Zhu, Ray Luo, Ashfaq Ur Rehman

Understanding and Fine Tuning the Propensity of ATP-Driven Liquid-Liquid Phase Separation with Oligolysine

ChemRxiv(2024)10.26434/chemrxiv-2023-2fl3h-v2

N/A

0DataRank · unranked

0 citations

Yongxian Wu, Ray Luo, Qiang Zhu

Performance Tuning of Polarizable Gaussian Multipole Model in Molecular Dynamics Simulations

Journal of Chemical Theory and Computation(2025)10.1021/acs.jctc.4c01368

N/A

0DataRank · unranked

4 citations

Yongxian Wu, Yong Duan, Ray Luo, Zhen Huang

Isotropic Periodic Sum for Polarizable Gaussian Multipole Model

Journal of Chemical Theory and Computation(2025)10.1021/acs.jctc.5c00123

N/A

0DataRank · unranked

3 citations

Xiongwu Wu, Ray Luo, Zhen Huang

DEGAUSS: A Novel Softcore Force Field Using Double Exponential van der Waals and Gaussian Charge for Molecular Dynamics Simulations I: Theory and Validation

Journal of Chemical Theory and Computation(2025)10.1021/acs.jctc.5c01324

N/A

0DataRank · unranked

1 citations

Yong Duan, Xiongwu Wu, Ray Luo, Zhen Huang

Extending the MMPBSA method to membrane proteins: Addressing conformational changes upon ligand binding to P2Y12R

ChemRxiv(2025)10.26434/chemrxiv-2025-2zr3l

N/A

0DataRank · unranked

0 citations

Tianhong Wang, Ray Luo, Cizhang Zhao

Correction to “Development of a Pantetheine Force Field Library for Molecular Modeling”

Journal of Chemical Information and Modeling(2025)10.1021/acs.jcim.5c00282

N/A

0DataRank · unranked

0 citations

Andrew J. Schaub, Shiou‐Chuan Tsai, Ray Luo, Shiji Zhao

Extending the MMPBSA method to membrane proteins: Addressing conformational changes upon ligand binding to P2Y12R

ChemRxiv(2025)10.26434/chemrxiv-2025-2zr3l-v2

N/A

0DataRank · unranked

0 citations

Tianhong Wang, Ray Luo, Cizhang Zhao

Extending MMPBSA for membrane proteins: Addressing P2Y12R conformational changes upon ligand binding

Biophysical Journal(2025)10.1016/j.bpj.2025.05.023

N/A

0DataRank · unranked

0 citations

Tianhong Wang, Ray Luo, Cizhang Zhao

Optimization of Lennard–Jones Parameters for Induced Dipole Polarizable Gaussian Multipole Force Field

The Journal of Physical Chemistry B(2025)10.1021/acs.jpcb.5c05129

N/A

0DataRank · unranked

0 citations

Junmei Wang, Zhen Huang, Ray Luo, Piotr Cieplak, Yong Duan +1 more