Avanti Shrikumar

Biochemistry, Genetics and Molecular BiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 8 papers. Top paper: “Opportunities and obstacles for deep learning in biology and medicine”.

Opportunities and obstacles for deep learning in biology and medicine

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/142760

N/A

11.2DataRank · unranked

310 citations

Daniel S. Himmelstein, Brett K. Beaulieu‐Jones, Alexandr A. Kalinin, Brian T. Do, Gregory P. Way +31 more

Opportunities and obstacles for deep learning in biology and medicine

Journal of The Royal Society Interface(2018)10.1098/rsif.2017.0387

N/A

1.2DataRank · unranked

2203 citations

Daniel S. Himmelstein, Brett K. Beaulieu‐Jones, Alexandr A. Kalinin, Brian T. Do, Gregory P. Way +31 more

Base-resolution models of transcription-factor binding reveal soft motif syntax

Nature Genetics(2021)10.1038/s41588-021-00782-6

N/A

0DataRank · unranked

702 citations

Melanie Weilert, Avanti Shrikumar, Sabrina Krueger, Amr M. Alexandari, Khyati Dalal +6 more

Domain adaptive neural networks improve cross-species prediction of transcription factor binding

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.13.431115

N/A

0DataRank · unranked

7 citations

Divyanshi Srivastava, Avanti Shrikumar, Akshay Balsubramani, Ross C. Hardison, Anshul Kundaje +2 more

fastISM: performant in silico saturation mutagenesis for convolutional neural networks

Bioinformatics(2022)10.1093/bioinformatics/btac135

N/A

0DataRank · unranked

26 citations

Avanti Shrikumar, Jacob Matthew Schreiber, Anshul Kundaje, Surag Nair

Domain-adaptive neural networks improve cross-species prediction of transcription factor binding

Genome Research(2022)10.1101/gr.275394.121

N/A

0DataRank · unranked

45 citations

Divyanshi Srivastava, Avanti Shrikumar, Akshay Balsubramani, Ross C. Hardison, Anshul Kundaje +2 more

Short tandem repeats bind transcription factors to tune eukaryotic gene expression

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.24.493321

N/A

0DataRank · unranked

20 citations

Amr M. Alexandari, Michael G.B. Hayes, Emil Marklund, Julia M. Schaepe, Arjun K. Aditham +9 more

De novo distillation of thermodynamic affinity from deep learning regulatory sequence models of in vivo protein-DNA binding

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.11.540401

N/A

0DataRank · unranked

9 citations

Connor A. Horton, Avanti Shrikumar, Nilay Shah, Eileen Li, Melanie Weilert +5 more