🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Zhongge Zhang

Guizhou Normal University

ORCID: 0000-0002-6474-7045

Also affiliated with University of California San Diego

Biochemistry, Genetics and Molecular BiologyEnvironmental Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile
0Author DataRank

Indexed papers

0in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 17 papers. Top paper: “PtrR (YneJ) is a novel E. coli transcription factor regulating the putrescine stress response and glutamate utilization”.

PtrR (YneJ) is a novel E. coli transcription factor regulating the putrescine stress response and glutamate utilization

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.27.065417
N/A
0DataRank · unranked
7 citations

Ye Gao, Anand V. Sastry, Jonathan M. Monk, Nicholas Wong, Richard Szubin +5 more

UDP-glucose dehydrogenase Ugd in E. coli is activated by Gmd and RffD, is inhibited by CheY, and regulates swarming

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.08.899336
N/A
0DataRank · unranked
4 citations

Zhongge Zhang, Mohammad Aboulwafa, Milton H. Saier, Irina A. Rodionova

From coarse to fine: the absolute Escherichia coli proteome under diverse growth conditions

Molecular Systems Biology(2021)10.15252/msb.20209536
N/A
0DataRank · unranked
161 citations

Zhongge Zhang, Amir Banaei‐Esfahani, Jean‐Benoît Lalanne, Hiroyuki Okano, Ben C. Collins +8 more

Principles of gene regulation quantitatively connect DNA to RNA and proteins in bacteria

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.24.445329
N/A
0DataRank · unranked
22 citations

Matteo Mori, Igor Šegota, Zhongge Zhang, Ruedi Aebersold, Christina Ludwig +2 more

Cellular perception of growth rate and the mechanistic origin of bacterial growth law

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.16.464649
N/A
0DataRank · unranked
8 citations

Rohan Balakrishnan, Nathan Braniff, Matteo Mori, Gabriel Manzanarez, Zhongge Zhang +2 more

Coordination of gene expression with cell size enables Escherichia coli to efficiently maintain motility across conditions

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.12.443892
N/A
0DataRank · unranked
3 citations

Jonas Cremer, Leonardo Mancini, Zhongge Zhang, Teuta Piližota, Terence Hwa +1 more

A systems approach discovers the role and characteristics of seven LysR type transcription factors in Escherichia coli

Scientific Reports(2022)10.1038/s41598-022-11134-7
N/A
0DataRank · unranked
22 citations

Ye Gao, Jonathan M. Monk, Ying Hefner, Nicholas Wong, Richard Szubin +6 more

Histone-like nucleoid structuring (H-NS) protein silences the beta-glucoside ( bgl ) utilization operon in Escherichia coli by forming a DNA loop

Computational and Structural Biotechnology Journal(2022)10.1016/j.csbj.2022.11.027
N/A
0DataRank · unranked
11 citations

Zhongge Zhang, Milton H. Saier, Katie Jing Kay Lam

Insertion Sequence (IS) Element-Mediated Activating Mutations of the Cryptic Aromatic β-Glucoside Utilization (BglGFB) Operon Are Promoted by the Anti-Terminator Protein (BglG) in Escherichia coli

International Journal of Molecular Sciences(2022)10.3390/ijms23031505
N/A
0DataRank · unranked
8 citations

Kingswell Zhou, Dennis Tran, Milton H. Saier, Zhongge Zhang

Effects of Global and Specific DNA-Binding Proteins on Transcriptional Regulation of the E. coli bgl Operon

International Journal of Molecular Sciences(2022)10.3390/ijms231810343
N/A
0DataRank · unranked
4 citations

Zhongge Zhang, Katie Jing Kay Lam, Milton H. Saier, Dennis Tran

Enzyme expression kinetics by Escherichia coli during transition from rich to minimal media depends on proteome reserves

Nature Microbiology(2023)10.1038/s41564-022-01310-w
N/A
0DataRank · unranked
54 citations

Matteo Mori, Miriam Abele, Amir Banaei‐Esfahani, Zhongge Zhang, Hiroyuki Okano +4 more

E. coli allantoinase is activated by the downstream metabolic enzyme, glycerate kinase, and stabilizes the putative allantoin transporter by direct binding

Scientific Reports(2023)10.1038/s41598-023-31812-4
N/A
0DataRank · unranked
12 citations

Ali Hosseinnia, Sunyoung Kim, Norman Goodacre, Li Zhang, Zhongge Zhang +5 more

Investigating How Genomic Contexts Impact IS5 Transposition Within the Escherichia coli Genome

Microorganisms(2024)10.3390/microorganisms12122600
N/A
0DataRank · unranked
6 citations

Zhongge Zhang, Jialu Huo, Jack W. Ord, Sofia Smith, Milton H. Saier +1 more

Comprehensive Characterization of fucAO Operon Activation in Escherichia coli

International Journal of Molecular Sciences(2024)10.3390/ijms25073946
N/A
0DataRank · unranked
7 citations

Jialu Huo, Juan Velo, Harry Zhou, Alex Flaherty, Milton H. Saier +1 more

Transcriptional mechanism by which IS5 activates the fucAO operon in Escherichia coli

Nucleic Acids Research(2025)10.1093/nar/gkaf172
N/A
0DataRank · unranked
3 citations

Zhongge Zhang, Juan Velo, Jialu Huo, Sofia Smith, A.Y. Ho +2 more

Examining the Roles of Genomic Context and Endogenous Regulatory Elements on IS1 Transposition Within the Escherichia coli Genome

International Journal of Molecular Sciences(2025)10.3390/ijms26178375
N/A
0DataRank · unranked
1 citations

Zhongge Zhang, A.Y. Ho, Tusha Karnani, Jack W. Ord, Milton H. Saier +1 more

Investigating the Trans Effects of IS1 Transposases on Intragenomic DNA Movements in Escherichia coli

Microbial Physiology(2025)10.1159/000549727
N/A
0DataRank · unranked
0 citations

Zhongge Zhang, Junjie Wu, Sofia Smith, Zhenhao Feng, Keisha Ancheta +6 more