🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Kyle Ellrott

OHSU Knight Cancer Institute

ORCID: 0000-0002-6573-5900
Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
5.2Author DataRank

Indexed papers

3in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A harmonized meta-knowledgebase of clinical interpretations of somatic genomic variants in cancer

Nature Genetics(2020)10.1038/s41588-020-0603-8
Top 4%
4.9DataRank
Top 4%178 citations

Brian Walsh, Georgia Mayfield, David Tamborero, Dmitriy Sonkin, Kilannin Krysiak +34 more

Papers

Driven by 16 papers — median percentile 49. Top paper: “GA4GH: International policies and standards for data sharing across genomic research and healthcare”.

GA4GH: International policies and standards for data sharing across genomic research and healthcare

Cell Genomics(2021)10.1016/j.xgen.2021.100029
N/A
6.0DataRank · unranked
306 citations

Angela Page, Lindsay Smith, Jeremy Adams, Gil Alterovitz, Lawrence Babb +95 more

A harmonized meta-knowledgebase of clinical interpretations of somatic genomic variants in cancer

Nature Genetics(2020)10.1038/s41588-020-0603-8
Top 4%
4.9DataRank
Top 4%178 citations

Brian Walsh, Georgia Mayfield, David Tamborero, Dmitriy Sonkin, Kilannin Krysiak +34 more

Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space

Cell Genomics(2022)10.1016/j.xgen.2021.100085
N/A
3.9DataRank · unranked
132 citations

Anthony Philippakis, Enis Afgan, Eric Banks, Vincent J. Carey, Robert J. Carroll +95 more

A community effort to create standards for evaluating tumor subclonal reconstruction

Nature Biotechnology(2020)10.1038/s41587-019-0364-z
N/A
2.8DataRank · unranked
100 citations

Adriana Salcedo, Maxime Tarabichi, Shadrielle M. G. Espiritu, Amit G. Deshwar, Matei David +28 more

Classification of non-TCGA cancer samples to TCGA molecular subtypes using compact feature sets

Cancer Cell(2025)10.1016/j.ccell.2024.12.002
N/A
0.803DataRank · unranked
29 citations

Christopher K. Wong, Christina Yau, Mauro A.A. Castro, Jordan Lee, Brian Karlberg +24 more

recountmethylation enables flexible analysis of public blood DNA methylation array data

Bioinformatics Advances(2023)10.1093/bioadv/vbad020
Top 51%
0.348DataRank
Top 51%6 citations

Brian Walsh, Kyle Ellrott, Kasper D. Hansen, Reid F. Thompson, Abhinav Nellore +1 more

Protocol for assessing distances in pathway space for classifier feature sets from machine learning methods

STAR Protocols(2025)10.1016/j.xpro.2025.103681
N/A
0DataRank · unranked
0 citations

Victor H Apolonio, Vinicius S Chagas, Christopher K. Wong, Jordan Lee, Christina Yau +61 more

Protocol for obtaining cancer type and subtype predictions using subSCOPE

STAR Protocols(2025)10.1016/j.xpro.2025.103705
N/A
0DataRank · unranked
0 citations

A. Gordon Robertson, Kyle Ellrott, Christopher K. Wong, Jordan Lee, Christina Yau +54 more

Aggregating multimodal cancer data across unaligned embedding spaces maintains tumor of origin signal

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.14.653900
N/A
0DataRank · unranked
0 citations

Kaya Keutler, Layaa Sivakumar, Xubo Song, Kyle Ellrott, Raphael Kirchgaessner

Robust software development practices improve citations of RNA-seq tools

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.05.674580
N/A
0DataRank · unranked
0 citations

Ecem Ilgun, Tuna Okcu, Vladyslav Ostash, V. V. Bashynska, Can Alkan +17 more

Classification of non-TCGA cancer samples to TCGA molecular subtypes using compact feature sets

UNC Libraries(2025)10.17615/jwhb-3p36
N/A
0DataRank · unranked
0 citations

Anab Kemal, Mauro A.A. Castro, Christina Yau, Andrew D. Cherniack, Ina Felau +25 more

A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery

Cell Systems(2021)10.1016/j.cels.2021.05.021
N/A
0DataRank · unranked
42 citations

David Haan, Kristen D. Dang, Kami Chiotti, Matthew Inkman, Andrew Lamb +32 more

Crowd-sourced benchmarking of single-sample tumour subclonal reconstruction

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.14.495937
N/A
0DataRank · unranked
1 citations

Maxime Tarabichi, Alex Buchanan, Shadrielle M. G. Espiritu, Hongjiu Zhang, Kaiyi Zhu +24 more

recountmethylation enables flexible analysis of public blood DNA methylation array data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.19.492680
Top 100%
0DataRank
Top 100%0 citations

Brian Walsh, Kyle Ellrott, Kasper D. Hansen, Reid F. Thompson, Abhinav Nellore +1 more

SyntheVAEiser: augmenting traditional machine learning methods with VAE-based gene expression sample generation for improved cancer subtype predictions

Genome biology(2024)10.1186/s13059-024-03431-3
N/A
0DataRank · unranked
4 citations

Raphael Kirchgaessner, Jordan Lee, Matthew Peterkort, Liam Beckman, Jeremy Goecks +2 more

The GA4GH Task Execution Application Programming Interface: Enabling Easy Multicloud Task Execution

Computing in Science & Engineering(2024)10.1109/mcse.2024.3414994
N/A
0DataRank · unranked
2 citations

Matthew H. McLoughlin, Liam Beckman, Venkat S. Malladi, Kyle Ellrott, Alexander Kanitz